HEADER HYDROLASE 20-FEB-14 4P1H TITLE CRYSTAL STRUCTURE OF WILD TYPE HYPOCREA JECORINA CEL7A IN A MONOCLINIC TITLE 2 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: EXOGLUCANASE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN (UNP RESIDUES 18-449); COMPND 5 SYNONYM: 1,4-BETA-CELLOBIOHYDROLASE, EXOCELLOBIOHYDROLASE I, CBHI, COMPND 6 EXOGLUCANASE I; COMPND 7 EC: 3.2.1.91 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HYPOCREA JECORINA; SOURCE 3 ORGANISM_COMMON: TRICHODERMA REESEI; SOURCE 4 ORGANISM_TAXID: 431241; SOURCE 5 STRAIN: QM6A KEYWDS EXOGLUCANASE, CELLOBIOHYDROLASE I, CELLULASE, GLYCOSIDE HYDROLASE KEYWDS 2 FAMILY 7, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.B.BODENHEIMER,M.J.CUNEO,P.D.SWARTZ,D.A.MYLES,F.MEILLEUR REVDAT 6 27-SEP-23 4P1H 1 HETSYN REVDAT 5 29-JUL-20 4P1H 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE REVDAT 4 25-DEC-19 4P1H 1 SEQADV REVDAT 3 27-NOV-19 4P1H 1 SEQRES REVDAT 2 06-SEP-17 4P1H 1 COMPND SOURCE JRNL REMARK REVDAT 1 04-MAR-15 4P1H 0 JRNL AUTH A.M.BODENHEIMER,M.J.CUNEO,P.D.SWARTZ,D.A.MYLES,F.MEILLEUR JRNL TITL CRYSTAL STRUCTURE OF WILD TYPE HYPOCREA JECORINA CEL7A IN A JRNL TITL 2 MONOCLINIC CRYSTAL FORM JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 74.77 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 3 NUMBER OF REFLECTIONS : 56478 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3014 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3520 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.2650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3166 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 36 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.77000 REMARK 3 B22 (A**2) : 0.47000 REMARK 3 B33 (A**2) : 0.75000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.23000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.074 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.945 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3367 ; 0.024 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2829 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4615 ; 2.144 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6551 ; 1.030 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 6.531 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 137 ;33.158 ;25.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 466 ;12.040 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;15.879 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 498 ; 0.145 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4047 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 790 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1776 ; 1.607 ; 1.557 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1775 ; 1.606 ; 1.556 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2235 ; 2.239 ; 2.337 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2236 ; 2.239 ; 2.339 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1591 ; 2.754 ; 1.790 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1592 ; 2.753 ; 1.792 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2377 ; 3.919 ; 2.595 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4150 ; 5.370 ;14.400 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3986 ; 5.175 ;13.894 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 432 REMARK 3 ORIGIN FOR THE GROUP (A): 5.7459 -59.8725 74.3229 REMARK 3 T TENSOR REMARK 3 T11: 0.0539 T22: 0.0120 REMARK 3 T33: 0.0074 T12: 0.0054 REMARK 3 T13: -0.0101 T23: 0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.9751 L22: 0.1465 REMARK 3 L33: 0.3337 L12: 0.0281 REMARK 3 L13: -0.2439 L23: 0.1250 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: 0.0598 S13: 0.0075 REMARK 3 S21: -0.0200 S22: -0.0100 S23: -0.0042 REMARK 3 S31: -0.0188 S32: 0.0066 S33: -0.0118 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4P1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200395. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59300 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 74.770 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.30 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V3I REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, BENZAMIDINE, GADOLINIUM(III) REMARK 280 CHLORIDE HEXAHYDRATE, HEPES, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 308K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 76.22950 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.45200 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 76.22950 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 22.45200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 621 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 696 LIES ON A SPECIAL POSITION. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 THR A 24 CG2 REMARK 470 THR A 29 CG2 REMARK 470 ASP A 52 CG OD1 OD2 REMARK 470 GLU A 65 CG CD OE1 OE2 REMARK 470 LYS A 69 NZ REMARK 470 ALA A 100 CB REMARK 470 GLN A 101 CG CD OE1 NE2 REMARK 470 ASP A 114 CG OD1 OD2 REMARK 470 ASP A 150 OD2 REMARK 470 LYS A 157 CE NZ REMARK 470 ASN A 200 ND2 REMARK 470 GLU A 239 CD OE1 OE2 REMARK 470 ASP A 241 CB CG OD1 OD2 REMARK 470 ASP A 249 CG OD1 OD2 REMARK 470 SER A 278 CB OG REMARK 470 LYS A 286 CD CE NZ REMARK 470 GLU A 317 OE1 OE2 REMARK 470 LYS A 353 NZ REMARK 470 LYS A 354 NZ REMARK 470 GLN A 406 OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 941 O HOH A 942 2.07 REMARK 500 O4 NAG A 501 O HOH A 959 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 SM SM A 503 SM SM A 503 2558 0.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 321 CZ TYR A 321 CE2 -0.084 REMARK 500 GLU A 325 CD GLU A 325 OE1 0.086 REMARK 500 GLU A 408 CD GLU A 408 OE2 0.072 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 107 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 107 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 257 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 GLU A 295 OE1 - CD - OE2 ANGL. DEV. = -9.8 DEGREES REMARK 500 GLU A 295 CG - CD - OE1 ANGL. DEV. = 12.6 DEGREES REMARK 500 ARG A 394 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 95 -83.96 -89.66 REMARK 500 SER A 99 -139.83 -119.44 REMARK 500 SER A 341 12.32 -145.69 REMARK 500 SER A 341 13.03 -145.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 502 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SM A 503 SM REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 295 OE1 REMARK 620 2 GLU A 295 OE2 47.2 REMARK 620 3 GLU A 295 OE1 0.0 47.2 REMARK 620 4 GLU A 295 OE2 47.2 0.0 47.2 REMARK 620 5 GLU A 325 OE2 73.4 89.7 73.4 89.7 REMARK 620 6 GLU A 325 OE2 73.4 89.7 73.4 89.7 0.0 REMARK 620 7 HOH A 604 O 61.6 73.7 61.6 73.7 131.3 131.3 REMARK 620 8 HOH A 621 O 102.8 65.1 102.8 65.1 143.8 143.8 68.4 REMARK 620 9 HOH A 621 O 102.7 65.3 102.7 65.3 144.2 144.2 68.1 0.4 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P1S RELATED DB: PDB REMARK 900 RELATED ID: 4P1J RELATED DB: PDB DBREF 4P1H A 1 432 UNP P62694 GUX1_HYPJE 18 449 SEQRES 1 A 432 PCA SER ALA CYS THR LEU GLN SER GLU THR HIS PRO PRO SEQRES 2 A 432 LEU THR TRP GLN LYS CYS SER SER GLY GLY THR CYS THR SEQRES 3 A 432 GLN GLN THR GLY SER VAL VAL ILE ASP ALA ASN TRP ARG SEQRES 4 A 432 TRP THR HIS ALA THR ASN SER SER THR ASN CYS TYR ASP SEQRES 5 A 432 GLY ASN THR TRP SER SER THR LEU CYS PRO ASP ASN GLU SEQRES 6 A 432 THR CYS ALA LYS ASN CYS CYS LEU ASP GLY ALA ALA TYR SEQRES 7 A 432 ALA SER THR TYR GLY VAL THR THR SER GLY ASN SER LEU SEQRES 8 A 432 SER ILE GLY PHE VAL THR GLN SER ALA GLN LYS ASN VAL SEQRES 9 A 432 GLY ALA ARG LEU TYR LEU MET ALA SER ASP THR THR TYR SEQRES 10 A 432 GLN GLU PHE THR LEU LEU GLY ASN GLU PHE SER PHE ASP SEQRES 11 A 432 VAL ASP VAL SER GLN LEU PRO CYS GLY LEU ASN GLY ALA SEQRES 12 A 432 LEU TYR PHE VAL SER MET ASP ALA ASP GLY GLY VAL SER SEQRES 13 A 432 LYS TYR PRO THR ASN THR ALA GLY ALA LYS TYR GLY THR SEQRES 14 A 432 GLY TYR CYS ASP SER GLN CYS PRO ARG ASP LEU LYS PHE SEQRES 15 A 432 ILE ASN GLY GLN ALA ASN VAL GLU GLY TRP GLU PRO SER SEQRES 16 A 432 SER ASN ASN ALA ASN THR GLY ILE GLY GLY HIS GLY SER SEQRES 17 A 432 CYS CYS SER GLU MET ASP ILE TRP GLU ALA ASN SER ILE SEQRES 18 A 432 SER GLU ALA LEU THR PRO HIS PRO CYS THR THR VAL GLY SEQRES 19 A 432 GLN GLU ILE CYS GLU GLY ASP GLY CYS GLY GLY THR TYR SEQRES 20 A 432 SER ASP ASN ARG TYR GLY GLY THR CYS ASP PRO ASP GLY SEQRES 21 A 432 CYS ASP TRP ASN PRO TYR ARG LEU GLY ASN THR SER PHE SEQRES 22 A 432 TYR GLY PRO GLY SER SER PHE THR LEU ASP THR THR LYS SEQRES 23 A 432 LYS LEU THR VAL VAL THR GLN PHE GLU THR SER GLY ALA SEQRES 24 A 432 ILE ASN ARG TYR TYR VAL GLN ASN GLY VAL THR PHE GLN SEQRES 25 A 432 GLN PRO ASN ALA GLU LEU GLY SER TYR SER GLY ASN GLU SEQRES 26 A 432 LEU ASN ASP ASP TYR CYS THR ALA GLU GLU ALA GLU PHE SEQRES 27 A 432 GLY GLY SER SER PHE SER ASP LYS GLY GLY LEU THR GLN SEQRES 28 A 432 PHE LYS LYS ALA THR SER GLY GLY MET VAL LEU VAL MET SEQRES 29 A 432 SER LEU TRP ASP ASP TYR TYR ALA ASN MET LEU TRP LEU SEQRES 30 A 432 ASP SER THR TYR PRO THR ASN GLU THR SER SER THR PRO SEQRES 31 A 432 GLY ALA VAL ARG GLY SER CYS SER THR SER SER GLY VAL SEQRES 32 A 432 PRO ALA GLN VAL GLU SER GLN SER PRO ASN ALA LYS VAL SEQRES 33 A 432 THR PHE SER ASN ILE LYS PHE GLY PRO ILE GLY SER THR SEQRES 34 A 432 GLY ASN PRO HET PCA A 1 8 HET NAG A 501 14 HET NAG A 502 12 HET SM A 503 1 HET BEN A 504 9 HETNAM PCA PYROGLUTAMIC ACID HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SM SAMARIUM (III) ION HETNAM BEN BENZAMIDINE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 1 PCA C5 H7 N O3 FORMUL 2 NAG 2(C8 H15 N O6) FORMUL 4 SM SM 3+ FORMUL 5 BEN C7 H8 N2 FORMUL 6 HOH *364(H2 O) HELIX 1 AA1 ALA A 36 ARG A 39 5 4 HELIX 2 AA2 ASP A 63 ASN A 70 1 8 HELIX 3 AA3 ALA A 77 GLY A 83 1 7 HELIX 4 AA4 GLY A 164 GLY A 168 5 5 HELIX 5 AA5 ASP A 241 GLY A 244 5 4 HELIX 6 AA6 ASN A 327 GLY A 339 1 13 HELIX 7 AA7 SER A 341 LYS A 346 1 6 HELIX 8 AA8 GLY A 347 SER A 357 1 11 HELIX 9 AA9 MET A 374 SER A 379 1 6 HELIX 10 AB1 VAL A 403 SER A 411 1 9 SHEET 1 AA1 3 SER A 2 ALA A 3 0 SHEET 2 AA1 3 CYS A 71 LEU A 73 1 O LEU A 73 N SER A 2 SHEET 3 AA1 3 THR A 41 ALA A 43 -1 N HIS A 42 O CYS A 72 SHEET 1 AA210 VAL A 84 SER A 87 0 SHEET 2 AA210 SER A 90 GLY A 94 -1 O SER A 92 N THR A 85 SHEET 3 AA210 LYS A 415 PRO A 425 -1 O PHE A 418 N LEU A 91 SHEET 4 AA210 PRO A 13 CYS A 19 1 N CYS A 19 O PHE A 423 SHEET 5 AA210 CYS A 25 ILE A 34 -1 O GLN A 28 N TRP A 16 SHEET 6 AA210 ALA A 106 SER A 113 -1 O MET A 111 N SER A 31 SHEET 7 AA210 VAL A 361 ASP A 368 -1 O MET A 364 N LEU A 108 SHEET 8 AA210 LEU A 140 VAL A 147 -1 N TYR A 145 O VAL A 363 SHEET 9 AA210 GLU A 212 ALA A 218 -1 O MET A 213 N PHE A 146 SHEET 10 AA210 GLU A 223 HIS A 228 -1 O THR A 226 N ASP A 214 SHEET 1 AA3 9 THR A 116 TYR A 117 0 SHEET 2 AA3 9 ALA A 106 SER A 113 -1 N ALA A 112 O THR A 116 SHEET 3 AA3 9 CYS A 25 ILE A 34 -1 N SER A 31 O MET A 111 SHEET 4 AA3 9 PRO A 13 CYS A 19 -1 N TRP A 16 O GLN A 28 SHEET 5 AA3 9 LYS A 415 PRO A 425 1 O PHE A 423 N CYS A 19 SHEET 6 AA3 9 ASN A 125 ASP A 132 -1 N ASP A 130 O SER A 419 SHEET 7 AA3 9 LEU A 288 PHE A 294 -1 O VAL A 290 N PHE A 129 SHEET 8 AA3 9 ILE A 300 GLN A 306 -1 O TYR A 303 N VAL A 291 SHEET 9 AA3 9 VAL A 309 GLN A 312 -1 O PHE A 311 N TYR A 304 SHEET 1 AA4 2 TYR A 51 ASP A 52 0 SHEET 2 AA4 2 THR A 55 TRP A 56 -1 O THR A 55 N ASP A 52 SHEET 1 AA5 2 VAL A 96 GLN A 98 0 SHEET 2 AA5 2 LYS A 102 VAL A 104 -1 O ASN A 103 N THR A 97 SHEET 1 AA6 2 PHE A 182 ILE A 183 0 SHEET 2 AA6 2 GLN A 186 ALA A 187 -1 O GLN A 186 N ILE A 183 SHEET 1 AA7 2 GLU A 193 PRO A 194 0 SHEET 2 AA7 2 GLY A 202 ILE A 203 -1 O ILE A 203 N GLU A 193 SHEET 1 AA8 2 HIS A 206 CYS A 209 0 SHEET 2 AA8 2 GLU A 236 GLU A 239 -1 O GLU A 236 N CYS A 209 SHEET 1 AA9 2 TYR A 274 GLY A 275 0 SHEET 2 AA9 2 LEU A 282 ASP A 283 1 O LEU A 282 N GLY A 275 SHEET 1 AB1 2 ALA A 316 LEU A 318 0 SHEET 2 AB1 2 TYR A 321 GLY A 323 -1 O GLY A 323 N ALA A 316 SSBOND 1 CYS A 4 CYS A 72 1555 1555 2.09 SSBOND 2 CYS A 19 CYS A 25 1555 1555 2.19 SSBOND 3 CYS A 50 CYS A 71 1555 1555 2.01 SSBOND 4 CYS A 61 CYS A 67 1555 1555 2.15 SSBOND 5 CYS A 138 CYS A 397 1555 1555 2.07 SSBOND 6 CYS A 172 CYS A 210 1555 1555 2.18 SSBOND 7 CYS A 176 CYS A 209 1555 1555 2.11 SSBOND 8 CYS A 230 CYS A 256 1555 1555 2.10 SSBOND 9 CYS A 238 CYS A 243 1555 1555 2.08 SSBOND 10 CYS A 261 CYS A 331 1555 1555 2.13 LINK C PCA A 1 N SER A 2 1555 1555 1.32 LINK ND2 ASN A 270 C1 NAG A 501 1555 1555 1.51 LINK ND2 ASN A 384 C1 NAG A 502 1555 1555 1.43 LINK OE1 GLU A 295 SM SM A 503 1555 1555 2.73 LINK OE2 GLU A 295 SM SM A 503 1555 1555 2.60 LINK OE1 GLU A 295 SM SM A 503 1555 2558 2.31 LINK OE2 GLU A 295 SM SM A 503 1555 2558 2.44 LINK OE2 GLU A 325 SM SM A 503 1555 1555 2.16 LINK OE2 GLU A 325 SM SM A 503 1555 2558 2.53 LINK SM SM A 503 O HOH A 604 1555 2558 2.63 LINK SM SM A 503 O HOH A 621 1555 1555 2.38 LINK SM SM A 503 O HOH A 621 1555 2558 2.38 CISPEP 1 TYR A 381 PRO A 382 0 -5.70 CRYST1 152.459 44.904 57.567 90.00 101.25 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006559 0.000000 0.001304 0.00000 SCALE2 0.000000 0.022270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017711 0.00000 HETATM 1 N PCA A 1 13.532 -59.288 52.421 1.00 25.19 N ANISOU 1 N PCA A 1 3155 4063 2349 48 23 42 N HETATM 2 CA PCA A 1 14.425 -60.445 52.261 1.00 25.48 C ANISOU 2 CA PCA A 1 3172 4114 2396 29 27 -45 C HETATM 3 CB PCA A 1 14.693 -60.732 53.740 1.00 26.86 C ANISOU 3 CB PCA A 1 3384 4167 2655 27 22 -64 C HETATM 4 CG PCA A 1 13.471 -60.284 54.506 1.00 24.88 C ANISOU 4 CG PCA A 1 3159 3867 2427 44 6 -25 C HETATM 5 CD PCA A 1 12.925 -59.207 53.575 1.00 24.02 C ANISOU 5 CD PCA A 1 3040 3828 2258 56 11 50 C HETATM 6 OE PCA A 1 12.000 -58.471 53.939 1.00 25.62 O ANISOU 6 OE PCA A 1 3260 4005 2469 73 3 105 O HETATM 7 C PCA A 1 13.749 -61.652 51.626 1.00 24.01 C ANISOU 7 C PCA A 1 2946 3996 2180 26 15 -127 C HETATM 8 O PCA A 1 12.521 -61.810 51.695 1.00 23.61 O ANISOU 8 O PCA A 1 2891 3956 2121 37 -1 -130 O