HEADER MEMBRANE PROTEIN 27-FEB-14 4P1T TITLE CRYSTAL STRUCTURE OF THE DBL3X-DBL4EPSILON DOUBLE DOMAIN FROM THE TITLE 2 EXTRACELLULAR PART OF VAR2CSA PFEMP1 FROM PLASMODIUM FALCIPARUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ERYTHROCYTE MEMBRANE PROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DBL3X-DBL4EPSILON DOUBLE DOMAIN (UNP RESIDUES 1215-1950); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5838; SOURCE 4 STRAIN: FCR-3; SOURCE 5 GENE: VAR2CSA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SHUFFLE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS PFEMP1, CSA, DBL FOLD, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.GANGNARD,S.DECHAVANNE,A.SRIVASTAVA,F.AMIRAT,B.GAMAIN,A.LEWIT- AUTHOR 2 BENTLEY,G.A.BENTLEY REVDAT 3 27-DEC-23 4P1T 1 REMARK REVDAT 2 18-NOV-15 4P1T 1 JRNL REVDAT 1 04-MAR-15 4P1T 0 JRNL AUTH S.GANGNARD,A.LEWIT-BENTLEY,S.DECHAVANNE,A.SRIVASTAVA, JRNL AUTH 2 F.AMIRAT,G.A.BENTLEY,B.GAMAIN JRNL TITL STRUCTURE OF THE DBL3X-DBL4 EPSILON REGION OF THE VAR2CSA JRNL TITL 2 PLACENTAL MALARIA VACCINE CANDIDATE: INSIGHT INTO DBL DOMAIN JRNL TITL 3 INTERACTIONS. JRNL REF SCI REP V. 5 14868 2015 JRNL REFN ESSN 2045-2322 JRNL PMID 26450557 JRNL DOI 10.1038/SREP14868 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.16 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.2 REMARK 3 NUMBER OF REFLECTIONS : 17510 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.276 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.160 REMARK 3 FREE R VALUE TEST SET COUNT : 903 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 9 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 3.08 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.21 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 1799 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2285 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1697 REMARK 3 BIN R VALUE (WORKING SET) : 0.2265 REMARK 3 BIN FREE R VALUE : 0.2607 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.67 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 102 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5075 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 14 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 56.41 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 60.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.88070 REMARK 3 B22 (A**2) : 12.21960 REMARK 3 B33 (A**2) : -28.10030 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.361 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.436 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.879 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.821 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5200 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7037 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1777 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 149 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 739 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5200 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 685 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6146 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.24 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.50 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 24.71 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.98011 REMARK 200 MONOCHROMATOR : CHANNEL-CUT SI (111) REMARK 200 OPTICS : KB-MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17568 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.160 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.26300 REMARK 200 R SYM (I) : 0.24300 REMARK 200 FOR THE DATA SET : 6.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.1 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.93600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 0.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 3000, 100 MM BIS-TRIS BUFFER, REMARK 280 300 MM SODIUM CHLORIDE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.89700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 64.66800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.89700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 64.66800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1211 REMARK 465 ALA A 1212 REMARK 465 SER A 1213 REMARK 465 MET A 1214 REMARK 465 SER A 1215 REMARK 465 GLU A 1216 REMARK 465 THR A 1217 REMARK 465 GLN A 1386 REMARK 465 GLN A 1387 REMARK 465 LYS A 1388 REMARK 465 ASP A 1389 REMARK 465 LYS A 1390 REMARK 465 ILE A 1391 REMARK 465 GLY A 1392 REMARK 465 GLY A 1393 REMARK 465 VAL A 1394 REMARK 465 GLY A 1395 REMARK 465 SER A 1396 REMARK 465 SER A 1397 REMARK 465 THR A 1398 REMARK 465 ASN A 1479 REMARK 465 GLY A 1480 REMARK 465 LYS A 1481 REMARK 465 ASN A 1482 REMARK 465 GLU A 1483 REMARK 465 LYS A 1484 REMARK 465 LYS A 1485 REMARK 465 GLY A 1492 REMARK 465 GLN A 1493 REMARK 465 GLU A 1614 REMARK 465 ASN A 1615 REMARK 465 GLY A 1616 REMARK 465 ARG A 1617 REMARK 465 ALA A 1746 REMARK 465 ILE A 1747 REMARK 465 THR A 1748 REMARK 465 ASN A 1749 REMARK 465 GLY A 1750 REMARK 465 ASP A 1822 REMARK 465 PRO A 1823 REMARK 465 PRO A 1824 REMARK 465 LYS A 1825 REMARK 465 ARG A 1826 REMARK 465 ALA A 1827 REMARK 465 ASP A 1828 REMARK 465 THR A 1829 REMARK 465 CYS A 1830 REMARK 465 GLY A 1831 REMARK 465 ASP A 1832 REMARK 465 ASN A 1833 REMARK 465 SER A 1834 REMARK 465 ASN A 1835 REMARK 465 ASN A 1871 REMARK 465 LYS A 1872 REMARK 465 GLU A 1873 REMARK 465 SER A 1874 REMARK 465 GLU A 1875 REMARK 465 GLY A 1876 REMARK 465 GLY A 1877 REMARK 465 LYS A 1878 REMARK 465 ASP A 1879 REMARK 465 TYR A 1880 REMARK 465 SER A 1881 REMARK 465 ASN A 1923 REMARK 465 LYS A 1924 REMARK 465 LYS A 1925 REMARK 465 LEU A 1926 REMARK 465 GLN A 1927 REMARK 465 LYS A 1928 REMARK 465 LYS A 1929 REMARK 465 GLU A 1930 REMARK 465 THR A 1931 REMARK 465 GLU A 1932 REMARK 465 CYS A 1933 REMARK 465 GLU A 1934 REMARK 465 GLU A 1935 REMARK 465 GLU A 1936 REMARK 465 LYS A 1937 REMARK 465 GLY A 1938 REMARK 465 PRO A 1939 REMARK 465 LEU A 1940 REMARK 465 ASP A 1941 REMARK 465 LEU A 1942 REMARK 465 MET A 1943 REMARK 465 ASN A 1944 REMARK 465 GLU A 1945 REMARK 465 VAL A 1946 REMARK 465 LEU A 1947 REMARK 465 ASN A 1948 REMARK 465 LYS A 1949 REMARK 465 MET A 1950 REMARK 465 HIS A 1951 REMARK 465 HIS A 1952 REMARK 465 HIS A 1953 REMARK 465 HIS A 1954 REMARK 465 HIS A 1955 REMARK 465 HIS A 1956 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A1222 CG CD OE1 NE2 REMARK 470 ARG A1228 CG CD NE CZ NH1 NH2 REMARK 470 TYR A1282 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A1285 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1327 CG CD CE NZ REMARK 470 LYS A1328 CE NZ REMARK 470 GLN A1330 CG CD OE1 NE2 REMARK 470 LYS A1331 CE NZ REMARK 470 LYS A1333 CG CD CE NZ REMARK 470 GLU A1399 CD OE1 OE2 REMARK 470 ARG A1410 CG CD NE CZ NH1 NH2 REMARK 470 ARG A1417 CZ NH1 NH2 REMARK 470 LYS A1425 CD CE NZ REMARK 470 ASN A1427 CG OD1 ND2 REMARK 470 ASN A1428 CG OD1 ND2 REMARK 470 ASN A1429 CG OD1 ND2 REMARK 470 ILE A1431 CG1 CG2 CD1 REMARK 470 GLU A1447 CG CD OE1 OE2 REMARK 470 ILE A1478 CG1 CG2 CD1 REMARK 470 LYS A1490 CG CD CE NZ REMARK 470 SER A1491 OG REMARK 470 ASP A1495 CG OD1 OD2 REMARK 470 ILE A1497 CG1 CG2 CD1 REMARK 470 LYS A1580 CG CD CE NZ REMARK 470 LYS A1583 CG CD CE NZ REMARK 470 LYS A1589 CG CD CE NZ REMARK 470 LYS A1590 CG CD CE NZ REMARK 470 ASN A1592 CG OD1 ND2 REMARK 470 LYS A1593 CG CD CE NZ REMARK 470 LEU A1594 CG CD1 CD2 REMARK 470 LEU A1595 CG CD1 CD2 REMARK 470 LYS A1612 CG CD CE NZ REMARK 470 LEU A1613 CG CD1 CD2 REMARK 470 MET A1647 CG SD CE REMARK 470 LYS A1651 CG CD CE NZ REMARK 470 LYS A1685 CG CD CE NZ REMARK 470 LYS A1686 CG CD CE NZ REMARK 470 ARG A1692 CZ NH1 NH2 REMARK 470 LYS A1719 CG CD CE NZ REMARK 470 ASN A1730 CG OD1 ND2 REMARK 470 ASP A1731 CG OD1 OD2 REMARK 470 ASP A1752 CG OD1 OD2 REMARK 470 ARG A1753 CG CD NE CZ NH1 NH2 REMARK 470 GLU A1773 CG CD OE1 OE2 REMARK 470 LYS A1775 CG CD CE NZ REMARK 470 ASN A1778 CG OD1 ND2 REMARK 470 LEU A1781 CG CD1 CD2 REMARK 470 GLU A1786 CG CD OE1 OE2 REMARK 470 LYS A1818 CG CD CE NZ REMARK 470 LYS A1820 CG CD CE NZ REMARK 470 LYS A1839 CG CD CE NZ REMARK 470 LYS A1840 CG CD CE NZ REMARK 470 ASN A1847 CG OD1 ND2 REMARK 470 LYS A1869 CG CD CE NZ REMARK 470 MET A1882 CG SD CE REMARK 470 MET A1884 CG SD CE REMARK 470 LYS A1894 CG CD CE NZ REMARK 470 GLU A1899 CG CD OE1 OE2 REMARK 470 ASN A1903 CG OD1 ND2 REMARK 470 ILE A1905 CG1 CG2 CD1 REMARK 470 LYS A1910 CG CD CE NZ REMARK 470 ILE A1912 CG1 CG2 CD1 REMARK 470 GLN A1916 CG CD OE1 NE2 REMARK 470 THR A1918 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A1222 103.37 -45.98 REMARK 500 ALA A1223 -70.71 -81.25 REMARK 500 PRO A1241 2.29 -69.87 REMARK 500 ASN A1261 56.93 71.85 REMARK 500 TYR A1282 -127.26 71.12 REMARK 500 LYS A1327 -59.56 -148.14 REMARK 500 GLN A1330 -36.76 70.32 REMARK 500 ILE A1369 -17.62 -49.72 REMARK 500 PRO A1442 135.89 -34.48 REMARK 500 THR A1443 -171.07 -46.19 REMARK 500 GLU A1541 -70.44 -69.33 REMARK 500 PHE A1555 78.58 -101.91 REMARK 500 TYR A1565 78.47 -114.30 REMARK 500 CYS A1574 45.64 -85.91 REMARK 500 ASN A1585 40.21 -99.22 REMARK 500 GLU A1588 -124.90 49.26 REMARK 500 LYS A1589 125.95 -33.13 REMARK 500 LYS A1593 41.39 -79.03 REMARK 500 LEU A1594 83.28 -64.59 REMARK 500 LEU A1595 139.68 -7.44 REMARK 500 LYS A1612 -74.02 -69.87 REMARK 500 GLN A1630 71.02 -102.93 REMARK 500 LEU A1633 35.16 -81.94 REMARK 500 MET A1647 -157.59 -86.67 REMARK 500 LYS A1678 -78.37 -67.60 REMARK 500 HIS A1709 78.54 -109.03 REMARK 500 ASN A1744 -160.65 -122.64 REMARK 500 TYR A1867 -107.67 -116.27 REMARK 500 ARG A1868 -42.90 -16.59 REMARK 500 MET A1884 56.48 29.56 REMARK 500 TYR A1904 -4.46 53.92 REMARK 500 ILE A1905 76.23 -111.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2WAU RELATED DB: PDB REMARK 900 STRUCTURE OF DBL3X DOMAIN, WHICH IS THE FIRST HALF OF THE DBL3X- REMARK 900 DBL4EPSILON DOUBLE-DOMAIN STRUCTURE REMARK 900 RELATED ID: 3CML RELATED DB: PDB REMARK 900 STRUCTURE OF DBL3X DOMAIN, WHICH IS THE FIRST HALF OF THE DBL3X- REMARK 900 DBL4EPSILON DOUBLE-DOMAIN STRUCTURE DBREF 4P1T A 1215 1950 UNP Q6UDW7 Q6UDW7_PLAFA 1215 1950 SEQADV 4P1T MET A 1211 UNP Q6UDW7 EXPRESSION TAG SEQADV 4P1T ALA A 1212 UNP Q6UDW7 EXPRESSION TAG SEQADV 4P1T SER A 1213 UNP Q6UDW7 EXPRESSION TAG SEQADV 4P1T MET A 1214 UNP Q6UDW7 EXPRESSION TAG SEQADV 4P1T GLN A 1222 UNP Q6UDW7 ASN 1222 ENGINEERED MUTATION SEQADV 4P1T GLN A 1290 UNP Q6UDW7 ASN 1290 ENGINEERED MUTATION SEQADV 4P1T GLY A 1430 UNP Q6UDW7 SER 1430 ENGINEERED MUTATION SEQADV 4P1T LEU A 1594 UNP Q6UDW7 SER 1594 ENGINEERED MUTATION SEQADV 4P1T ALA A 1746 UNP Q6UDW7 THR 1746 ENGINEERED MUTATION SEQADV 4P1T PRO A 1751 UNP Q6UDW7 THR 1751 ENGINEERED MUTATION SEQADV 4P1T ALA A 1846 UNP Q6UDW7 THR 1846 ENGINEERED MUTATION SEQADV 4P1T GLN A 1916 UNP Q6UDW7 ASN 1916 ENGINEERED MUTATION SEQADV 4P1T HIS A 1951 UNP Q6UDW7 EXPRESSION TAG SEQADV 4P1T HIS A 1952 UNP Q6UDW7 EXPRESSION TAG SEQADV 4P1T HIS A 1953 UNP Q6UDW7 EXPRESSION TAG SEQADV 4P1T HIS A 1954 UNP Q6UDW7 EXPRESSION TAG SEQADV 4P1T HIS A 1955 UNP Q6UDW7 EXPRESSION TAG SEQADV 4P1T HIS A 1956 UNP Q6UDW7 EXPRESSION TAG SEQRES 1 A 746 MET ALA SER MET SER GLU THR SER CYS ASP LEU GLN ALA SEQRES 2 A 746 THR ASN TYR ILE ARG GLY CYS GLN SER LYS THR TYR ASP SEQRES 3 A 746 GLY LYS ILE PHE PRO GLY LYS GLY GLY GLU LYS GLN TRP SEQRES 4 A 746 ILE CYS LYS ASP THR ILE ILE HIS GLY ASP THR ASN GLY SEQRES 5 A 746 ALA CYS ILE PRO PRO ARG THR GLN ASN LEU CYS VAL GLY SEQRES 6 A 746 GLU LEU TRP ASP LYS SER TYR GLY GLY ARG SER ASN ILE SEQRES 7 A 746 LYS GLN ASP THR LYS GLU LEU LEU LYS GLU LYS ILE LYS SEQRES 8 A 746 ASN ALA ILE HIS LYS GLU THR GLU LEU LEU TYR GLU TYR SEQRES 9 A 746 HIS ASP THR GLY THR ALA ILE ILE SER LYS ASN ASP LYS SEQRES 10 A 746 LYS GLY GLN LYS GLY LYS ASN ASP PRO ASN GLY LEU PRO SEQRES 11 A 746 LYS GLY PHE CYS HIS ALA VAL GLN ARG SER PHE ILE ASP SEQRES 12 A 746 TYR LYS ASN MET ILE LEU GLY THR SER VAL ASN ILE TYR SEQRES 13 A 746 GLU HIS ILE GLY LYS LEU GLN GLU ASP ILE LYS LYS ILE SEQRES 14 A 746 ILE GLU LYS GLY THR PRO GLN GLN LYS ASP LYS ILE GLY SEQRES 15 A 746 GLY VAL GLY SER SER THR GLU ASN VAL ASN ALA TRP TRP SEQRES 16 A 746 LYS GLY ILE GLU ARG GLU MET TRP ASP ALA VAL ARG CYS SEQRES 17 A 746 ALA ILE THR LYS ILE ASN LYS LYS ASN ASN ASN GLY ILE SEQRES 18 A 746 PHE ASN GLY ASP GLU CYS GLY VAL SER PRO PRO THR GLY SEQRES 19 A 746 ASN ASP GLU ASP GLN SER VAL SER TRP PHE LYS GLU TRP SEQRES 20 A 746 GLY GLU GLN PHE CYS ILE GLU ARG LEU ARG TYR GLU GLN SEQRES 21 A 746 ASN ILE ARG GLU ALA CYS THR ILE ASN GLY LYS ASN GLU SEQRES 22 A 746 LYS LYS CYS ILE ASN SER LYS SER GLY GLN GLY ASP LYS SEQRES 23 A 746 ILE GLN GLY ALA CYS LYS ARG LYS CYS GLU LYS TYR LYS SEQRES 24 A 746 LYS TYR ILE SER GLU LYS LYS GLN GLU TRP ASP LYS GLN SEQRES 25 A 746 LYS THR LYS TYR GLU ASN LYS TYR VAL GLY LYS SER ALA SEQRES 26 A 746 SER ASP LEU LEU LYS GLU ASN TYR PRO GLU CYS ILE SER SEQRES 27 A 746 ALA ASN PHE ASP PHE ILE PHE ASN ASP ASN ILE GLU TYR SEQRES 28 A 746 LYS THR TYR TYR PRO TYR GLY ASP TYR SER SER ILE CYS SEQRES 29 A 746 SER CYS GLU GLN VAL LYS TYR TYR LYS TYR ASN ASN ALA SEQRES 30 A 746 GLU LYS LYS ASN ASN LYS LEU LEU CYS TYR GLU LYS ASP SEQRES 31 A 746 ASN ASP MET THR TRP SER LYS LYS TYR ILE LYS LYS LEU SEQRES 32 A 746 GLU ASN GLY ARG SER LEU GLU GLY VAL TYR VAL PRO PRO SEQRES 33 A 746 ARG ARG GLN GLN LEU CYS LEU TYR GLU LEU PHE PRO ILE SEQRES 34 A 746 ILE ILE LYS ASN GLU GLU GLY MET GLU LYS ALA LYS GLU SEQRES 35 A 746 GLU LEU LEU GLU THR LEU GLN ILE VAL ALA GLU ARG GLU SEQRES 36 A 746 ALA TYR TYR LEU TRP LYS GLN TYR ASN PRO THR GLY LYS SEQRES 37 A 746 GLY ILE ASP ASP ALA ASN LYS LYS ALA CYS CYS ALA ILE SEQRES 38 A 746 ARG GLY SER PHE TYR ASP LEU GLU ASP ILE ILE LYS GLY SEQRES 39 A 746 ASN ASP LEU VAL HIS ASP GLU TYR THR LYS TYR ILE ASP SEQRES 40 A 746 SER LYS LEU ASN GLU ILE PHE GLY SER SER ASP THR ASN SEQRES 41 A 746 ASP ILE ASP THR LYS ARG ALA ARG THR ASP TRP TRP GLU SEQRES 42 A 746 ASN GLU ALA ILE THR ASN GLY PRO ASP ARG LYS THR ILE SEQRES 43 A 746 ARG GLN LEU VAL TRP ASP ALA MET GLN SER GLY VAL ARG SEQRES 44 A 746 TYR ALA VAL GLU GLU LYS ASN GLU ASN PHE PRO LEU CYS SEQRES 45 A 746 MET GLY VAL GLU HIS ILE GLY ILE ALA LYS PRO GLN PHE SEQRES 46 A 746 ILE ARG TRP LEU GLU GLU TRP THR ASN GLU PHE CYS GLU SEQRES 47 A 746 LYS TYR THR LYS TYR PHE GLU ASP MET LYS SER LYS CYS SEQRES 48 A 746 ASP PRO PRO LYS ARG ALA ASP THR CYS GLY ASP ASN SER SEQRES 49 A 746 ASN ILE GLU CYS LYS LYS ALA CYS ALA ASN TYR ALA ASN SEQRES 50 A 746 TRP LEU ASN PRO LYS ARG ILE GLU TRP ASN GLY MET SER SEQRES 51 A 746 ASN TYR TYR ASN LYS ILE TYR ARG LYS SER ASN LYS GLU SEQRES 52 A 746 SER GLU GLY GLY LYS ASP TYR SER MET ILE MET ALA PRO SEQRES 53 A 746 THR VAL ILE ASP TYR LEU ASN LYS ARG CYS HIS GLY GLU SEQRES 54 A 746 ILE ASN GLY ASN TYR ILE CYS CYS SER CYS LYS ASN ILE SEQRES 55 A 746 GLY ALA TYR GLN THR THR SER GLY THR VAL ASN LYS LYS SEQRES 56 A 746 LEU GLN LYS LYS GLU THR GLU CYS GLU GLU GLU LYS GLY SEQRES 57 A 746 PRO LEU ASP LEU MET ASN GLU VAL LEU ASN LYS MET HIS SEQRES 58 A 746 HIS HIS HIS HIS HIS FORMUL 2 HOH *14(H2 O) HELIX 1 AA1 PRO A 1266 ASN A 1271 1 6 HELIX 2 AA2 VAL A 1274 GLU A 1276 5 3 HELIX 3 AA3 ILE A 1288 ASP A 1291 5 4 HELIX 4 AA4 THR A 1292 THR A 1317 1 26 HELIX 5 AA5 ALA A 1320 LYS A 1324 5 5 HELIX 6 AA6 GLY A 1342 LEU A 1359 1 18 HELIX 7 AA7 ILE A 1369 LYS A 1382 1 14 HELIX 8 AA8 ASN A 1400 ASN A 1427 1 28 HELIX 9 AA9 GLY A 1434 GLY A 1438 5 5 HELIX 10 AB1 GLY A 1444 GLU A 1447 5 4 HELIX 11 AB2 ASP A 1448 CYS A 1476 1 29 HELIX 12 AB3 GLY A 1499 TYR A 1530 1 32 HELIX 13 AB4 SER A 1534 TYR A 1543 1 10 HELIX 14 AB5 PRO A 1544 ILE A 1547 5 4 HELIX 15 AB6 ASN A 1550 PHE A 1555 1 6 HELIX 16 AB7 ASN A 1558 TYR A 1565 1 8 HELIX 17 AB8 TYR A 1567 SER A 1571 5 5 HELIX 18 AB9 PRO A 1625 GLN A 1630 1 6 HELIX 19 AC1 GLU A 1635 ASN A 1643 1 9 HELIX 20 AC2 MET A 1647 ASN A 1674 1 28 HELIX 21 AC3 GLY A 1679 LYS A 1703 1 25 HELIX 22 AC4 TYR A 1712 GLY A 1725 1 14 HELIX 23 AC5 ASN A 1730 ASN A 1744 1 15 HELIX 24 AC6 THR A 1755 LYS A 1775 1 21 HELIX 25 AC7 PRO A 1793 SER A 1819 1 27 HELIX 26 AC8 GLU A 1837 TYR A 1867 1 31 HELIX 27 AC9 THR A 1887 HIS A 1897 1 11 HELIX 28 AD1 TYR A 1915 GLY A 1920 1 6 SHEET 1 AA1 2 TRP A1278 ASP A1279 0 SHEET 2 AA1 2 ARG A1285 SER A1286 -1 O ARG A1285 N ASP A1279 SSBOND 1 CYS A 1219 CYS A 1418 1555 1555 2.04 SSBOND 2 CYS A 1230 CYS A 1273 1555 1555 2.04 SSBOND 3 CYS A 1251 CYS A 1264 1555 1555 2.04 SSBOND 4 CYS A 1344 CYS A 1437 1555 1555 2.04 SSBOND 5 CYS A 1462 CYS A 1546 1555 1555 2.05 SSBOND 6 CYS A 1476 CYS A 1501 1555 1555 2.05 SSBOND 7 CYS A 1486 CYS A 1576 1555 1555 2.04 SSBOND 8 CYS A 1505 CYS A 1574 1555 1555 2.04 SSBOND 9 CYS A 1596 CYS A 1632 1555 1555 2.04 SSBOND 10 CYS A 1688 CYS A 1782 1555 1555 2.04 SSBOND 11 CYS A 1689 CYS A 1906 1555 1555 2.00 SSBOND 12 CYS A 1807 CYS A 1909 1555 1555 2.04 SSBOND 13 CYS A 1821 CYS A 1838 1555 1555 2.04 SSBOND 14 CYS A 1896 CYS A 1907 1555 1555 2.04 CISPEP 1 PHE A 1240 PRO A 1241 0 4.64 CRYST1 99.794 129.336 64.065 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010021 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007732 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015609 0.00000