HEADER TRANSFERASE/TRANSFERASE INHIBITOR 27-FEB-14 4P1U TITLE INFLUENZA A (FLU) VIRUS POLYMERASE BASIC PROTEIN 2 (PB2) BOUND TO TITLE 2 VX787, AN AZAINDOLE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE BASIC PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: RNA-DIRECTED RNA POLYMERASE SUBUNIT P3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 392809; SOURCE 4 STRAIN: A/VICTORIA/3/1975 H3N2; SOURCE 5 GENE: PB2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28B.1 KEYWDS SMALL-MOLECULE DRUG, INHIBITOR, FLU, M7-GTP POCKET, TRANSFERASE- KEYWDS 2 TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.D.JACOBS REVDAT 4 27-DEC-23 4P1U 1 SOURCE JRNL REMARK HETSYN REVDAT 3 01-OCT-14 4P1U 1 JRNL REVDAT 2 06-AUG-14 4P1U 1 JRNL REVDAT 1 30-JUL-14 4P1U 0 JRNL AUTH M.P.CLARK,M.W.LEDEBOER,I.DAVIES,R.A.BYRN,S.M.JONES,E.PEROLA, JRNL AUTH 2 A.TSAI,M.JACOBS,K.NTI-ADDAE,U.K.BANDARAGE,M.J.BOYD, JRNL AUTH 3 R.S.BETHIEL,J.J.COURT,H.DENG,J.P.DUFFY,W.A.DORSCH, JRNL AUTH 4 L.J.FARMER,H.GAO,W.GU,K.JACKSON,D.H.JACOBS,J.M.KENNEDY, JRNL AUTH 5 B.LEDFORD,J.LIANG,F.MALTAIS,M.MURCKO,T.WANG,M.W.WANNAMAKER, JRNL AUTH 6 H.B.BENNETT,J.R.LEEMAN,C.MCNEIL,W.P.TAYLOR,C.MEMMOTT, JRNL AUTH 7 M.JIANG,R.RIJNBRAND,C.BRAL,U.GERMANN,A.NEZAMI,Y.ZHANG, JRNL AUTH 8 F.G.SALITURO,Y.L.BENNANI,P.S.CHARIFSON JRNL TITL DISCOVERY OF A NOVEL, FIRST-IN-CLASS, ORALLY BIOAVAILABLE JRNL TITL 2 AZAINDOLE INHIBITOR (VX-787) OF INFLUENZA PB2. JRNL REF J.MED.CHEM. V. 57 6668 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25019388 JRNL DOI 10.1021/JM5007275 REMARK 2 REMARK 2 RESOLUTION. 2.52 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.52 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 6992 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.910 REMARK 3 FREE R VALUE TEST SET COUNT : 343 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 5 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.52 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1866 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.1916 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3018 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1236 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 47 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35720 REMARK 3 B22 (A**2) : 0.35720 REMARK 3 B33 (A**2) : -0.71450 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 68 REMARK 3 ORIGIN FOR THE GROUP (A): -45.5621 -4.7458 0.9865 REMARK 3 T TENSOR REMARK 3 T11: 0.0192 T22: -0.1001 REMARK 3 T33: -0.0139 T12: 0.0874 REMARK 3 T13: -0.1128 T23: -0.0389 REMARK 3 L TENSOR REMARK 3 L11: 1.5367 L22: 4.5969 REMARK 3 L33: 3.2168 L12: -0.0963 REMARK 3 L13: -0.3776 L23: 2.7452 REMARK 3 S TENSOR REMARK 3 S11: -0.0579 S12: 0.1279 S13: 0.0748 REMARK 3 S21: -0.4482 S22: -0.1951 S23: 0.6536 REMARK 3 S31: -0.3184 S32: -0.2874 S33: 0.2530 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 69 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): -36.5460 -0.1273 3.9189 REMARK 3 T TENSOR REMARK 3 T11: 0.0342 T22: -0.1287 REMARK 3 T33: -0.1159 T12: 0.0641 REMARK 3 T13: 0.0044 T23: -0.0086 REMARK 3 L TENSOR REMARK 3 L11: 2.2058 L22: 7.4497 REMARK 3 L33: 5.3748 L12: 1.2795 REMARK 3 L13: 1.0426 L23: 3.1562 REMARK 3 S TENSOR REMARK 3 S11: -0.0455 S12: 0.4300 S13: -0.0434 REMARK 3 S21: -0.5240 S22: -0.0463 S23: -0.0768 REMARK 3 S31: -0.2194 S32: 0.2913 S33: 0.0918 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): -31.3928 4.8489 2.5586 REMARK 3 T TENSOR REMARK 3 T11: 0.0948 T22: -0.1323 REMARK 3 T33: -0.1864 T12: 0.0637 REMARK 3 T13: 0.0704 T23: -0.0789 REMARK 3 L TENSOR REMARK 3 L11: 3.6504 L22: 9.5188 REMARK 3 L33: 2.6400 L12: 0.7386 REMARK 3 L13: 0.9415 L23: 0.1184 REMARK 3 S TENSOR REMARK 3 S11: -0.0885 S12: 0.3155 S13: 0.0096 REMARK 3 S21: -0.4424 S22: 0.2769 S23: -0.6229 REMARK 3 S31: -0.3476 S32: 0.4278 S33: -0.1884 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : NULL REMARK 3 ION PROBE RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P1U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-FEB-14. REMARK 100 THE DEPOSITION ID IS D_1000200525. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9774 REMARK 200 MONOCHROMATOR : 0.9774 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13202 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.520 REMARK 200 RESOLUTION RANGE LOW (A) : 26.570 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.52 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 ?L PROTEIN SOLUTION (2.8 MG/ML REMARK 280 PROTEIN, 50 MM TRIS BUFFER PH 8, 200 MM SODIUM CHLORIDE, 2 MM REMARK 280 DITHIOTHREITOL, 1 MM ANTHRAQUINONE-2,6-DISULFONIC ACID DISODIUM REMARK 280 SALT, 7.5 MM GTP) AND 0.4 ?L WELL SOLUTION (1.5 M SODIUM FORMATE, REMARK 280 100 MM SODIUM CITRATE BUFFER PH 4.7, 10 MM DITHIOTHREITOL) WAS REMARK 280 SUSPENDED OVER 1 ML OF WELL SOLUTION. THE CRYSTALS WERE REMARK 280 TRANSFERRED TO A SOAKING SOLUTION (3.25 M SODIUM FORMATE, 100 MM REMARK 280 SODIUM CITRATE BUFFER PH 4.7) CONTAINING 1 MM VRT-0928787. REMARK 280 CRYSTALS WERE INCUBATED APPROXIMATELY 15 HOURS T ROOM REMARK 280 TEMPERATURE, AND THEN TRANSFERRED TO A CRYO-PRESERVATIVE REMARK 280 SOLUTION (SOAKING SOLUTION WITH 25 % V/V GLYCEROL) PRIOR TO REMARK 280 FREEZING IN LIQUID NITROGEN., VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.28467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 18.14233 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 27.21350 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 9.07117 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 45.35583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 15 REMARK 465 HIS A 16 REMARK 465 MET A 17 REMARK 465 ARG A 18 REMARK 465 ILE A 19 REMARK 465 SER A 20 REMARK 465 ARG A 123 REMARK 465 ALA A 124 REMARK 465 ASN A 125 REMARK 465 GLN A 126 REMARK 465 ARG A 127 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 41 CG CD OE1 OE2 REMARK 470 ARG A 136 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG A 115 ND2 ASN A 119 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 118 -24.60 65.81 REMARK 500 ASN A 119 85.72 -62.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 21G A 4000 DBREF 4P1U A 18 183 UNP P31345 PB2_I75A3 318 483 SEQADV 4P1U GLY A 15 UNP P31345 EXPRESSION TAG SEQADV 4P1U HIS A 16 UNP P31345 EXPRESSION TAG SEQADV 4P1U MET A 17 UNP P31345 EXPRESSION TAG SEQADV 4P1U LYS A 89 UNP P31345 ARG 389 CONFLICT SEQRES 1 A 169 GLY HIS MET ARG ILE SER SER SER PHE SER PHE GLY GLY SEQRES 2 A 169 PHE THR PHE LYS ARG THR SER GLY SER SER ILE LYS ARG SEQRES 3 A 169 GLU GLU GLU VAL LEU THR GLY ASN LEU GLN THR LEU LYS SEQRES 4 A 169 ILE ARG VAL HIS GLU GLY TYR GLU GLU PHE THR MET VAL SEQRES 5 A 169 GLY LYS ARG ALA THR ALA ILE LEU ARG LYS ALA THR ARG SEQRES 6 A 169 ARG LEU VAL GLN LEU ILE VAL SER GLY LYS ASP GLU GLN SEQRES 7 A 169 SER ILE ALA GLU ALA ILE ILE VAL ALA MET VAL PHE SER SEQRES 8 A 169 GLN GLU ASP CYS MET ILE LYS ALA VAL ARG GLY ASP LEU SEQRES 9 A 169 ASN PHE VAL ASN ARG ALA ASN GLN ARG LEU ASN PRO MET SEQRES 10 A 169 HIS GLN LEU LEU ARG HIS PHE GLN LYS ASP ALA LYS VAL SEQRES 11 A 169 LEU PHE GLN ASN TRP GLY ILE GLU HIS ILE ASP ASN VAL SEQRES 12 A 169 MET GLY MET VAL GLY VAL LEU PRO ASP MET THR PRO SER SEQRES 13 A 169 THR GLU MET SER MET ARG GLY ILE ARG VAL SER LYS MET HET 21G A4000 29 HETNAM 21G (2S,3S)-3-[[5-FLUORANYL-2-(5-FLUORANYL-1H-PYRROLO[2,3- HETNAM 2 21G B]PYRIDIN-3-YL)PYRIMIDIN-4- HETNAM 3 21G YL]AMINO]BICYCLO[2.2.2]OCTANE-2-CARBOXYLIC ACID HETSYN 21G 3-[[5-FLUORO-2-(5-FLUORO-1H-PYRROLO[2,3-B]PYRIDIN-3- HETSYN 2 21G YL)PYRIMIDIN-4-YL]AMINO]BICYCLO[2.2.2]OCTANE-2- HETSYN 3 21G CARBOXYLIC ACID; VX787; (2S,3S)-3-((5-FLUORO-2-(5- HETSYN 4 21G FLUORO-1H-PYRROLO[2,3-B]PYRIDIN-3-YL)PYRIMIDIN-4-YL) HETSYN 5 21G AMINO)BICYCLO[2.2.2]OCTANE-2-CARBOXYLIC ACID FORMUL 2 21G C20 H19 F2 N5 O2 FORMUL 3 HOH *47(H2 O) HELIX 1 AA1 ASP A 90 SER A 105 1 16 HELIX 2 AA2 GLU A 107 ALA A 113 1 7 HELIX 3 AA3 ASN A 129 ASP A 141 1 13 HELIX 4 AA4 ALA A 142 GLY A 150 1 9 SHEET 1 AA1 8 SER A 22 PHE A 25 0 SHEET 2 AA1 8 PHE A 28 GLY A 35 -1 O PHE A 30 N PHE A 23 SHEET 3 AA1 8 GLU A 61 VAL A 66 -1 O VAL A 66 N THR A 29 SHEET 4 AA1 8 ALA A 70 ALA A 77 -1 O LEU A 74 N PHE A 63 SHEET 5 AA1 8 ARG A 80 GLY A 88 -1 O ARG A 80 N ALA A 77 SHEET 6 AA1 8 ILE A 178 SER A 181 1 O ARG A 179 N LEU A 84 SHEET 7 AA1 8 MET A 160 VAL A 163 -1 N VAL A 161 O VAL A 180 SHEET 8 AA1 8 PRO A 169 SER A 170 -1 O SER A 170 N GLY A 162 SHEET 1 AA2 2 ILE A 38 LEU A 45 0 SHEET 2 AA2 2 THR A 51 GLU A 58 -1 O LEU A 52 N VAL A 44 SHEET 1 AA3 2 ILE A 151 HIS A 153 0 SHEET 2 AA3 2 MET A 173 MET A 175 -1 O SER A 174 N GLU A 152 SITE 1 AC1 13 PHE A 23 SER A 24 ARG A 55 HIS A 57 SITE 2 AC1 13 GLU A 61 PHE A 63 LYS A 76 PHE A 104 SITE 3 AC1 13 GLN A 106 MET A 131 HIS A 132 HOH A4141 SITE 4 AC1 13 HOH A4146 CRYST1 81.174 81.174 54.427 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012319 0.007113 0.000000 0.00000 SCALE2 0.000000 0.014225 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018373 0.00000