HEADER RNA BINDING PROTEIN 28-FEB-14 4P1Z TITLE STRUCTURE OF THE MID DOMAIN FROM MIWI COMPND MOL_ID: 1; COMPND 2 MOLECULE: PIWI-LIKE PROTEIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: PIWIL1, MIWI; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: ROSETTA; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPROEXHTB KEYWDS MID DOMAIN, MIWI, PIRNA BIOGENESIS, RNA BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR E.CORA,A.A.MCCARTHY,R.S.PILLAI REVDAT 5 27-DEC-23 4P1Z 1 REMARK REVDAT 4 30-SEP-15 4P1Z 1 REMARK REVDAT 3 23-SEP-15 4P1Z 1 REMARK REVDAT 2 01-OCT-14 4P1Z 1 JRNL REVDAT 1 07-MAY-14 4P1Z 0 JRNL AUTH E.CORA,R.R.PANDEY,J.XIOL,J.TAYLOR,R.SACHIDANANDAM, JRNL AUTH 2 A.A.MCCARTHY,R.S.PILLAI JRNL TITL THE MID-PIWI MODULE OF PIWI PROTEINS SPECIFIES NUCLEOTIDE- JRNL TITL 2 AND STRAND-BIASES OF PIRNAS. JRNL REF RNA V. 20 773 2014 JRNL REFN ESSN 1469-9001 JRNL PMID 24757166 JRNL DOI 10.1261/RNA.044701.114 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 24331 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.244 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1245 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1604 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.23 REMARK 3 BIN R VALUE (WORKING SET) : 0.4550 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.4610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3876 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 79.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.71000 REMARK 3 B22 (A**2) : -2.62000 REMARK 3 B33 (A**2) : -2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.410 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.266 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.341 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 34.580 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3933 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5323 ; 1.607 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 493 ; 6.437 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 148 ;35.186 ;25.135 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 773 ;17.616 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.719 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 654 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2774 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1981 ; 3.259 ; 3.702 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2468 ; 5.162 ; 5.534 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1952 ; 4.568 ; 4.172 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B C D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 486 A 612 3 REMARK 3 1 B 486 B 610 3 REMARK 3 1 C 486 C 610 3 REMARK 3 1 D 492 D 610 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 443 ; 0.080 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 B (A): 443 ; 0.070 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 C (A): 443 ; 0.080 ; 5.000 REMARK 3 LOOSE POSITIONAL 1 D (A): 443 ; 0.070 ; 5.000 REMARK 3 TIGHT THERMAL 1 A (A**2): 471 ; 5.340 ; 0.500 REMARK 3 TIGHT THERMAL 1 B (A**2): 471 ; 5.260 ; 0.500 REMARK 3 TIGHT THERMAL 1 C (A**2): 471 ; 7.260 ; 0.500 REMARK 3 TIGHT THERMAL 1 D (A**2): 471 ;11.350 ; 0.500 REMARK 3 LOOSE THERMAL 1 A (A**2): 443 ; 6.630 ;10.000 REMARK 3 LOOSE THERMAL 1 B (A**2): 443 ; 6.700 ;10.000 REMARK 3 LOOSE THERMAL 1 C (A**2): 443 ;10.390 ;10.000 REMARK 3 LOOSE THERMAL 1 D (A**2): 443 ;11.250 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 486 A 612 REMARK 3 ORIGIN FOR THE GROUP (A): -13.6410 -11.7590 8.6240 REMARK 3 T TENSOR REMARK 3 T11: 0.7019 T22: 0.2234 REMARK 3 T33: 0.1366 T12: -0.0700 REMARK 3 T13: -0.0304 T23: -0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.6611 L22: 0.2006 REMARK 3 L33: 6.7109 L12: 0.5728 REMARK 3 L13: -1.0086 L23: -0.3142 REMARK 3 S TENSOR REMARK 3 S11: 0.2422 S12: -0.1664 S13: -0.0372 REMARK 3 S21: 0.0492 S22: -0.0473 S23: -0.0244 REMARK 3 S31: -0.1195 S32: -0.1329 S33: -0.1949 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 486 B 610 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9650 -11.2610 46.1220 REMARK 3 T TENSOR REMARK 3 T11: 0.8092 T22: 0.2243 REMARK 3 T33: 0.0892 T12: -0.0619 REMARK 3 T13: 0.0295 T23: 0.0677 REMARK 3 L TENSOR REMARK 3 L11: 0.8752 L22: 1.1872 REMARK 3 L33: 4.4657 L12: 0.9874 REMARK 3 L13: 0.0758 L23: -0.3824 REMARK 3 S TENSOR REMARK 3 S11: -0.0770 S12: 0.1363 S13: -0.0002 REMARK 3 S21: -0.0484 S22: 0.2276 S23: 0.0452 REMARK 3 S31: -0.0899 S32: -0.0469 S33: -0.1506 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 485 C 610 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6480 13.7810 9.7650 REMARK 3 T TENSOR REMARK 3 T11: 0.9729 T22: 0.1819 REMARK 3 T33: 0.0418 T12: -0.0028 REMARK 3 T13: 0.0420 T23: -0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.4050 L22: 2.1986 REMARK 3 L33: 6.0776 L12: 0.7777 REMARK 3 L13: -0.4223 L23: 1.0839 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: -0.0066 S13: 0.0281 REMARK 3 S21: 0.2016 S22: -0.0995 S23: 0.0629 REMARK 3 S31: 0.0304 S32: 0.0391 S33: 0.0248 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 492 D 610 REMARK 3 ORIGIN FOR THE GROUP (A): -14.7160 15.3580 46.9930 REMARK 3 T TENSOR REMARK 3 T11: 0.9939 T22: 0.4012 REMARK 3 T33: 0.2129 T12: -0.0411 REMARK 3 T13: 0.0792 T23: -0.0943 REMARK 3 L TENSOR REMARK 3 L11: 1.4673 L22: 1.6821 REMARK 3 L33: 7.5359 L12: 1.4740 REMARK 3 L13: 1.2015 L23: 2.1360 REMARK 3 S TENSOR REMARK 3 S11: -0.2397 S12: 0.3287 S13: -0.5290 REMARK 3 S21: -0.4366 S22: 0.3917 S23: -0.4692 REMARK 3 S31: -1.1322 S32: -0.3210 S33: -0.1521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4P1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200401. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.8-8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24331 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.50 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.10 REMARK 200 R MERGE FOR SHELL (I) : 0.70900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXDE, SHARP, SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: PLATES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26-32% PEG 4000, 100MM TRIS-HCL, 100 REMARK 280 -200MM MGCL2, PH 7.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.93000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.24000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.64500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 73.24000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.93000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.64500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13590 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 485 REMARK 465 GLY B 485 REMARK 465 CYS B 611 REMARK 465 LYS B 612 REMARK 465 CYS C 611 REMARK 465 LYS C 612 REMARK 465 GLY D 485 REMARK 465 ALA D 486 REMARK 465 PRO D 487 REMARK 465 LEU D 488 REMARK 465 ILE D 489 REMARK 465 SER D 490 REMARK 465 VAL D 491 REMARK 465 GLY D 593 REMARK 465 CYS D 611 REMARK 465 LYS D 612 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 612 CG CD CE NZ REMARK 470 ARG B 504 NE CZ NH1 NH2 REMARK 470 GLN B 595 CG CD OE1 NE2 REMARK 470 ARG C 504 CD NE CZ NH1 NH2 REMARK 470 ARG D 590 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 595 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 544 O PHE B 517 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU B 534 OE1 GLN C 548 3445 1.80 REMARK 500 OD1 ASP D 553 NH1 ARG D 565 1455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 577 CB CYS B 577 SG -0.116 REMARK 500 CYS C 577 CB CYS C 577 SG -0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 503 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO C 487 147.60 -31.67 REMARK 500 MET C 609 3.32 -68.53 REMARK 500 REMARK 500 REMARK: NULL DBREF 4P1Z A 485 612 UNP Q9JMB7 PIWL1_MOUSE 485 612 DBREF 4P1Z B 485 612 UNP Q9JMB7 PIWL1_MOUSE 485 612 DBREF 4P1Z C 485 612 UNP Q9JMB7 PIWL1_MOUSE 485 612 DBREF 4P1Z D 485 612 UNP Q9JMB7 PIWL1_MOUSE 485 612 SEQRES 1 A 128 GLY ALA PRO LEU ILE SER VAL LYS PRO LEU ASP ASN TRP SEQRES 2 A 128 LEU LEU ILE TYR THR ARG ARG ASN TYR GLU ALA ALA ASN SEQRES 3 A 128 SER LEU ILE GLN ASN LEU PHE LYS VAL THR PRO ALA MET SEQRES 4 A 128 GLY ILE GLN MET LYS LYS ALA ILE MET ILE GLU VAL ASP SEQRES 5 A 128 ASP ARG THR GLU ALA TYR LEU ARG ALA LEU GLN GLN LYS SEQRES 6 A 128 VAL THR SER ASP THR GLN ILE VAL VAL CYS LEU LEU SER SEQRES 7 A 128 SER ASN ARG LYS ASP LYS TYR ASP ALA ILE LYS LYS TYR SEQRES 8 A 128 LEU CYS THR ASP CYS PRO THR PRO SER GLN CYS VAL VAL SEQRES 9 A 128 ALA ARG THR LEU GLY LYS GLN GLN THR VAL MET ALA ILE SEQRES 10 A 128 ALA THR LYS ILE ALA LEU GLN MET ASN CYS LYS SEQRES 1 B 128 GLY ALA PRO LEU ILE SER VAL LYS PRO LEU ASP ASN TRP SEQRES 2 B 128 LEU LEU ILE TYR THR ARG ARG ASN TYR GLU ALA ALA ASN SEQRES 3 B 128 SER LEU ILE GLN ASN LEU PHE LYS VAL THR PRO ALA MET SEQRES 4 B 128 GLY ILE GLN MET LYS LYS ALA ILE MET ILE GLU VAL ASP SEQRES 5 B 128 ASP ARG THR GLU ALA TYR LEU ARG ALA LEU GLN GLN LYS SEQRES 6 B 128 VAL THR SER ASP THR GLN ILE VAL VAL CYS LEU LEU SER SEQRES 7 B 128 SER ASN ARG LYS ASP LYS TYR ASP ALA ILE LYS LYS TYR SEQRES 8 B 128 LEU CYS THR ASP CYS PRO THR PRO SER GLN CYS VAL VAL SEQRES 9 B 128 ALA ARG THR LEU GLY LYS GLN GLN THR VAL MET ALA ILE SEQRES 10 B 128 ALA THR LYS ILE ALA LEU GLN MET ASN CYS LYS SEQRES 1 C 128 GLY ALA PRO LEU ILE SER VAL LYS PRO LEU ASP ASN TRP SEQRES 2 C 128 LEU LEU ILE TYR THR ARG ARG ASN TYR GLU ALA ALA ASN SEQRES 3 C 128 SER LEU ILE GLN ASN LEU PHE LYS VAL THR PRO ALA MET SEQRES 4 C 128 GLY ILE GLN MET LYS LYS ALA ILE MET ILE GLU VAL ASP SEQRES 5 C 128 ASP ARG THR GLU ALA TYR LEU ARG ALA LEU GLN GLN LYS SEQRES 6 C 128 VAL THR SER ASP THR GLN ILE VAL VAL CYS LEU LEU SER SEQRES 7 C 128 SER ASN ARG LYS ASP LYS TYR ASP ALA ILE LYS LYS TYR SEQRES 8 C 128 LEU CYS THR ASP CYS PRO THR PRO SER GLN CYS VAL VAL SEQRES 9 C 128 ALA ARG THR LEU GLY LYS GLN GLN THR VAL MET ALA ILE SEQRES 10 C 128 ALA THR LYS ILE ALA LEU GLN MET ASN CYS LYS SEQRES 1 D 128 GLY ALA PRO LEU ILE SER VAL LYS PRO LEU ASP ASN TRP SEQRES 2 D 128 LEU LEU ILE TYR THR ARG ARG ASN TYR GLU ALA ALA ASN SEQRES 3 D 128 SER LEU ILE GLN ASN LEU PHE LYS VAL THR PRO ALA MET SEQRES 4 D 128 GLY ILE GLN MET LYS LYS ALA ILE MET ILE GLU VAL ASP SEQRES 5 D 128 ASP ARG THR GLU ALA TYR LEU ARG ALA LEU GLN GLN LYS SEQRES 6 D 128 VAL THR SER ASP THR GLN ILE VAL VAL CYS LEU LEU SER SEQRES 7 D 128 SER ASN ARG LYS ASP LYS TYR ASP ALA ILE LYS LYS TYR SEQRES 8 D 128 LEU CYS THR ASP CYS PRO THR PRO SER GLN CYS VAL VAL SEQRES 9 D 128 ALA ARG THR LEU GLY LYS GLN GLN THR VAL MET ALA ILE SEQRES 10 D 128 ALA THR LYS ILE ALA LEU GLN MET ASN CYS LYS FORMUL 5 HOH *13(H2 O) HELIX 1 AA1 ASN A 505 THR A 520 1 16 HELIX 2 AA2 PRO A 521 MET A 523 5 3 HELIX 3 AA3 ARG A 538 VAL A 550 1 13 HELIX 4 AA4 ARG A 565 CYS A 580 1 16 HELIX 5 AA5 ARG A 590 GLY A 593 5 4 HELIX 6 AA6 LYS A 594 MET A 609 1 16 HELIX 7 AA7 ASN B 505 THR B 520 1 16 HELIX 8 AA8 PRO B 521 MET B 523 5 3 HELIX 9 AA9 ARG B 538 VAL B 550 1 13 HELIX 10 AB1 ARG B 565 CYS B 580 1 16 HELIX 11 AB2 ARG B 590 GLY B 593 5 4 HELIX 12 AB3 LYS B 594 MET B 609 1 16 HELIX 13 AB4 ASN C 505 THR C 520 1 16 HELIX 14 AB5 PRO C 521 MET C 523 5 3 HELIX 15 AB6 ARG C 538 VAL C 550 1 13 HELIX 16 AB7 ARG C 565 CYS C 580 1 16 HELIX 17 AB8 ARG C 590 GLY C 593 5 4 HELIX 18 AB9 LYS C 594 MET C 609 1 16 HELIX 19 AC1 ASN D 505 THR D 520 1 16 HELIX 20 AC2 PRO D 521 GLY D 524 5 4 HELIX 21 AC3 ARG D 538 VAL D 550 1 13 HELIX 22 AC4 ARG D 565 CYS D 580 1 16 HELIX 23 AC5 ARG D 590 LEU D 592 5 3 HELIX 24 AC6 GLN D 595 MET D 609 1 15 SHEET 1 AA1 2 LYS A 492 LEU A 494 0 SHEET 2 AA1 2 ILE A 525 MET A 527 1 O GLN A 526 N LEU A 494 SHEET 1 AA2 4 ILE A 531 VAL A 535 0 SHEET 2 AA2 4 LEU A 498 THR A 502 1 N LEU A 499 O ILE A 531 SHEET 3 AA2 4 VAL A 557 LEU A 561 1 O LEU A 560 N ILE A 500 SHEET 4 AA2 4 SER A 584 VAL A 588 1 O VAL A 587 N LEU A 561 SHEET 1 AA3 2 LYS B 492 LEU B 494 0 SHEET 2 AA3 2 ILE B 525 MET B 527 1 O GLN B 526 N LEU B 494 SHEET 1 AA4 4 ILE B 531 VAL B 535 0 SHEET 2 AA4 4 TRP B 497 THR B 502 1 N TRP B 497 O ILE B 531 SHEET 3 AA4 4 ILE B 556 LEU B 561 1 O LEU B 560 N ILE B 500 SHEET 4 AA4 4 SER B 584 VAL B 588 1 O VAL B 587 N LEU B 561 SHEET 1 AA5 2 LYS C 492 LEU C 494 0 SHEET 2 AA5 2 ILE C 525 MET C 527 1 O GLN C 526 N LEU C 494 SHEET 1 AA6 4 ILE C 531 VAL C 535 0 SHEET 2 AA6 4 TRP C 497 THR C 502 1 N TRP C 497 O ILE C 531 SHEET 3 AA6 4 ILE C 556 LEU C 561 1 O LEU C 560 N ILE C 500 SHEET 4 AA6 4 SER C 584 VAL C 588 1 O VAL C 587 N LEU C 561 SHEET 1 AA7 2 PRO D 493 LEU D 494 0 SHEET 2 AA7 2 GLN D 526 MET D 527 1 O GLN D 526 N LEU D 494 SHEET 1 AA8 4 ILE D 531 VAL D 535 0 SHEET 2 AA8 4 LEU D 498 THR D 502 1 N LEU D 499 O ILE D 533 SHEET 3 AA8 4 VAL D 557 LEU D 561 1 O LEU D 560 N ILE D 500 SHEET 4 AA8 4 SER D 584 VAL D 588 1 O VAL D 587 N LEU D 561 SSBOND 1 CYS A 577 CYS C 577 1555 1555 2.07 SSBOND 2 CYS B 577 CYS D 577 1555 1555 2.00 CRYST1 35.860 101.290 146.480 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027886 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009873 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006827 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 0.965592 -0.067046 -0.251270 13.48526 1 MTRIX2 2 0.105364 0.984202 0.142286 -5.53824 1 MTRIX3 2 0.237760 -0.163865 0.957402 -33.34134 1 MTRIX1 3 -0.857315 0.187907 -0.479273 -17.21182 1 MTRIX2 3 -0.285076 -0.948510 0.138061 -2.05160 1 MTRIX3 3 -0.428652 0.254991 0.866739 -6.33293 1 MTRIX1 4 -0.979324 -0.019536 0.201352 -38.23595 1 MTRIX2 4 0.023040 -0.999621 0.015074 3.04141 1 MTRIX3 4 0.200981 0.019402 0.979403 -33.95143 1