data_4P20 # _entry.id 4P20 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4P20 pdb_00004p20 10.2210/pdb4p20/pdb WWPDB D_1000200531 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-05-07 2 'Structure model' 1 1 2015-01-07 3 'Structure model' 1 2 2017-11-22 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' Other 5 3 'Structure model' 'Refinement description' 6 3 'Structure model' 'Source and taxonomy' 7 3 'Structure model' 'Structure summary' 8 4 'Structure model' 'Data collection' 9 4 'Structure model' 'Database references' 10 4 'Structure model' 'Derived calculations' 11 4 'Structure model' 'Refinement description' 12 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' citation 2 3 'Structure model' pdbx_database_status 3 3 'Structure model' pdbx_entity_src_syn 4 3 'Structure model' pdbx_struct_assembly 5 3 'Structure model' pdbx_struct_oper_list 6 3 'Structure model' software 7 3 'Structure model' struct_keywords 8 4 'Structure model' chem_comp 9 4 'Structure model' chem_comp_atom 10 4 'Structure model' chem_comp_bond 11 4 'Structure model' database_2 12 4 'Structure model' entity 13 4 'Structure model' pdbx_entity_nonpoly 14 4 'Structure model' refine_hist # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_citation.journal_id_CSD' 2 3 'Structure model' '_pdbx_database_status.pdb_format_compatible' 3 3 'Structure model' '_pdbx_entity_src_syn.pdbx_alt_source_flag' 4 3 'Structure model' '_pdbx_struct_assembly.oligomeric_details' 5 3 'Structure model' '_pdbx_struct_oper_list.symmetry_operation' 6 3 'Structure model' '_struct_keywords.text' 7 4 'Structure model' '_chem_comp.name' 8 4 'Structure model' '_database_2.pdbx_DOI' 9 4 'Structure model' '_database_2.pdbx_database_accession' 10 4 'Structure model' '_entity.pdbx_description' 11 4 'Structure model' '_pdbx_entity_nonpoly.name' 12 4 'Structure model' '_refine_hist.number_atoms_total' 13 4 'Structure model' '_refine_hist.pdbx_number_atoms_nucleic_acid' 14 4 'Structure model' '_refine_hist.pdbx_number_atoms_protein' # _pdbx_database_PDB_obs_spr.id SPRSDE _pdbx_database_PDB_obs_spr.date 2014-05-07 _pdbx_database_PDB_obs_spr.pdb_id 4P20 _pdbx_database_PDB_obs_spr.replace_pdb_id 2G5Q _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr . _pdbx_database_status.entry_id 4P20 _pdbx_database_status.recvd_initial_deposition_date 2014-02-28 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_cs . _pdbx_database_status.methods_development_category . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kondo, J.' 1 'Francois, B.' 2 'Russell, R.J.M.' 3 'Murray, J.B.' 4 'Westhof, E.' 5 # _citation.abstract . _citation.abstract_id_CAS . _citation.book_id_ISBN . _citation.book_publisher ? _citation.book_publisher_city . _citation.book_title . _citation.coordinate_linkage . _citation.country FR _citation.database_id_Medline . _citation.details . _citation.id primary _citation.journal_abbrev Biochimie _citation.journal_id_ASTM BICMBE _citation.journal_id_CSD 0466 _citation.journal_id_ISSN 0300-9084 _citation.journal_full . _citation.journal_issue . _citation.journal_volume 88 _citation.language . _citation.page_first 1027 _citation.page_last 1031 _citation.title ;Crystal structure of the bacterial ribosomal decoding site complexed with amikacin containing the gamma-amino-alpha-hydroxybutyryl (haba) group. ; _citation.year 2006 _citation.database_id_CSD . _citation.pdbx_database_id_DOI 10.1016/j.biochi.2006.05.017 _citation.pdbx_database_id_PubMed 16806634 _citation.unpublished_flag . # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kondo, J.' 1 ? primary 'Francois, B.' 2 ? primary 'Russell, R.J.' 3 ? primary 'Murray, J.B.' 4 ? primary 'Westhof, E.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*UP*UP*GP*CP*GP*UP*CP*AP*CP*AP*CP*CP*GP*GP*UP*GP*AP*AP*GP*UP*CP*GP*C)-3'" 7355.409 2 ? ? ? ? 2 non-polymer syn ;(2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide ; 585.603 2 ? ? ? ? 3 water nat water 18.015 75 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code UUGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_seq_one_letter_code_can UUGCGUCACACCGGUGAAGUCGC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;(2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide ; AKN 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 U n 1 2 U n 1 3 G n 1 4 C n 1 5 G n 1 6 U n 1 7 C n 1 8 A n 1 9 C n 1 10 A n 1 11 C n 1 12 C n 1 13 G n 1 14 G n 1 15 U n 1 16 G n 1 17 A n 1 18 A n 1 19 G n 1 20 U n 1 21 C n 1 22 G n 1 23 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 23 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 AKN non-polymer . ;(2S)-N-[(1R,2S,3S,4R,5S)-4-[(2R,3R,4S,5S,6R)-6-(aminomethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-5-azanyl-2-[(2S,3R,4S,5S ,6R)-4-azanyl-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]-4-azanyl-2-oxidanyl-butanamide ; AMIKACIN 'C22 H43 N5 O13' 585.603 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 U 1 0 ? ? ? A . n A 1 2 U 2 1 ? ? ? A . n A 1 3 G 3 2 2 G G A . n A 1 4 C 4 3 3 C C A . n A 1 5 G 5 4 4 G G A . n A 1 6 U 6 5 5 U U A . n A 1 7 C 7 6 6 C C A . n A 1 8 A 8 7 7 A A A . n A 1 9 C 9 8 8 C C A . n A 1 10 A 10 9 9 A A A . n A 1 11 C 11 10 10 C C A . n A 1 12 C 12 11 11 C C A . n A 1 13 G 13 12 12 G G A . n A 1 14 G 14 13 13 G G A . n A 1 15 U 15 14 14 U U A . n A 1 16 G 16 15 15 G G A . n A 1 17 A 17 16 16 A A A . n A 1 18 A 18 17 17 A A A . n A 1 19 G 19 18 18 G G A . n A 1 20 U 20 19 19 U U A . n A 1 21 C 21 20 20 C C A . n A 1 22 G 22 21 21 G G A . n A 1 23 C 23 22 22 C C A . n B 1 1 U 1 22 ? ? ? B . n B 1 2 U 2 23 ? ? ? B . n B 1 3 G 3 24 24 G G B . n B 1 4 C 4 25 25 C C B . n B 1 5 G 5 26 26 G G B . n B 1 6 U 6 27 27 U U B . n B 1 7 C 7 28 28 C C B . n B 1 8 A 8 29 29 A A B . n B 1 9 C 9 30 30 C C B . n B 1 10 A 10 31 31 A A B . n B 1 11 C 11 32 32 C C B . n B 1 12 C 12 33 33 C C B . n B 1 13 G 13 34 34 G G B . n B 1 14 G 14 35 35 G G B . n B 1 15 U 15 36 36 U U B . n B 1 16 G 16 37 37 G G B . n B 1 17 A 17 38 38 A A B . n B 1 18 A 18 39 39 A A B . n B 1 19 G 19 40 40 G G B . n B 1 20 U 20 41 41 U U B . n B 1 21 C 21 42 42 C C B . n B 1 22 G 22 43 43 G G B . n B 1 23 C 23 44 44 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 AKN 1 101 52 AKN AMI A . D 2 AKN 1 101 51 AKN AMI B . E 3 HOH 1 201 153 HOH HOH A . E 3 HOH 2 202 118 HOH HOH A . E 3 HOH 3 203 149 HOH HOH A . E 3 HOH 4 204 131 HOH HOH A . E 3 HOH 5 205 162 HOH HOH A . E 3 HOH 6 206 154 HOH HOH A . E 3 HOH 7 207 175 HOH HOH A . E 3 HOH 8 208 155 HOH HOH A . E 3 HOH 9 209 174 HOH HOH A . E 3 HOH 10 210 166 HOH HOH A . E 3 HOH 11 211 168 HOH HOH A . E 3 HOH 12 212 102 HOH HOH A . E 3 HOH 13 213 108 HOH HOH A . E 3 HOH 14 214 110 HOH HOH A . E 3 HOH 15 215 112 HOH HOH A . E 3 HOH 16 216 113 HOH HOH A . E 3 HOH 17 217 114 HOH HOH A . E 3 HOH 18 218 115 HOH HOH A . E 3 HOH 19 219 121 HOH HOH A . E 3 HOH 20 220 122 HOH HOH A . E 3 HOH 21 221 123 HOH HOH A . E 3 HOH 22 222 124 HOH HOH A . E 3 HOH 23 223 125 HOH HOH A . E 3 HOH 24 224 128 HOH HOH A . E 3 HOH 25 225 129 HOH HOH A . E 3 HOH 26 226 130 HOH HOH A . E 3 HOH 27 227 135 HOH HOH A . E 3 HOH 28 228 136 HOH HOH A . E 3 HOH 29 229 139 HOH HOH A . E 3 HOH 30 230 143 HOH HOH A . E 3 HOH 31 231 158 HOH HOH A . E 3 HOH 32 232 160 HOH HOH A . E 3 HOH 33 233 171 HOH HOH A . E 3 HOH 34 234 172 HOH HOH A . E 3 HOH 35 235 176 HOH HOH A . F 3 HOH 1 201 104 HOH HOH B . F 3 HOH 2 202 159 HOH HOH B . F 3 HOH 3 203 148 HOH HOH B . F 3 HOH 4 204 134 HOH HOH B . F 3 HOH 5 205 120 HOH HOH B . F 3 HOH 6 206 150 HOH HOH B . F 3 HOH 7 207 117 HOH HOH B . F 3 HOH 8 208 127 HOH HOH B . F 3 HOH 9 209 107 HOH HOH B . F 3 HOH 10 210 142 HOH HOH B . F 3 HOH 11 211 152 HOH HOH B . F 3 HOH 12 212 119 HOH HOH B . F 3 HOH 13 213 133 HOH HOH B . F 3 HOH 14 214 170 HOH HOH B . F 3 HOH 15 215 161 HOH HOH B . F 3 HOH 16 216 145 HOH HOH B . F 3 HOH 17 217 169 HOH HOH B . F 3 HOH 18 218 101 HOH HOH B . F 3 HOH 19 219 103 HOH HOH B . F 3 HOH 20 220 105 HOH HOH B . F 3 HOH 21 221 106 HOH HOH B . F 3 HOH 22 222 109 HOH HOH B . F 3 HOH 23 223 116 HOH HOH B . F 3 HOH 24 224 126 HOH HOH B . F 3 HOH 25 225 132 HOH HOH B . F 3 HOH 26 226 137 HOH HOH B . F 3 HOH 27 227 138 HOH HOH B . F 3 HOH 28 228 140 HOH HOH B . F 3 HOH 29 229 141 HOH HOH B . F 3 HOH 30 230 144 HOH HOH B . F 3 HOH 31 231 146 HOH HOH B . F 3 HOH 32 232 147 HOH HOH B . F 3 HOH 33 233 151 HOH HOH B . F 3 HOH 34 234 156 HOH HOH B . F 3 HOH 35 235 157 HOH HOH B . F 3 HOH 36 236 163 HOH HOH B . F 3 HOH 37 237 164 HOH HOH B . F 3 HOH 38 238 165 HOH HOH B . F 3 HOH 39 239 167 HOH HOH B . F 3 HOH 40 240 173 HOH HOH B . # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? phasing . . . . . . . . . . . AMoRE . . . . 1 ? refinement . . . . . . . . . . . CNS . . . . 2 ? 'data extraction' . . . . . . . . . . . PDB_EXTRACT . . . . 3 # _cell.length_a 47.550 _cell.length_b 32.820 _cell.length_c 52.660 _cell.angle_alpha 90.000 _cell.angle_beta 108.710 _cell.angle_gamma 90.000 _cell.entry_id 4P20 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4P20 _symmetry.cell_setting . _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M . # _exptl.absorpt_coefficient_mu . _exptl.absorpt_correction_T_max . _exptl.absorpt_correction_T_min . _exptl.absorpt_correction_type . _exptl.absorpt_process_details . _exptl.entry_id 4P20 _exptl.crystals_number 1 _exptl.details . _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details . # _exptl_crystal.colour . _exptl_crystal.density_diffrn . _exptl_crystal.density_Matthews 2.65 _exptl_crystal.density_method . _exptl_crystal.density_percent_sol 53.51 _exptl_crystal.description . _exptl_crystal.F_000 . _exptl_crystal.id 1 _exptl_crystal.preparation . _exptl_crystal.size_max . _exptl_crystal.size_mid . _exptl_crystal.size_min . _exptl_crystal.size_rad . _exptl_crystal.colour_lustre . _exptl_crystal.colour_modifier . _exptl_crystal.colour_primary . _exptl_crystal.density_meas . _exptl_crystal.density_meas_esd . _exptl_crystal.density_meas_gt . _exptl_crystal.density_meas_lt . _exptl_crystal.density_meas_temp . _exptl_crystal.density_meas_temp_esd . _exptl_crystal.density_meas_temp_gt . _exptl_crystal.density_meas_temp_lt . _exptl_crystal.pdbx_crystal_image_url . _exptl_crystal.pdbx_crystal_image_format . _exptl_crystal.pdbx_mosaicity . _exptl_crystal.pdbx_mosaicity_esd . # _exptl_crystal_grow.apparatus . _exptl_crystal_grow.atmosphere . _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details . _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.method_ref . _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pressure . _exptl_crystal_grow.pressure_esd . _exptl_crystal_grow.seeding . _exptl_crystal_grow.seeding_ref . _exptl_crystal_grow.temp 310 _exptl_crystal_grow.temp_details . _exptl_crystal_grow.temp_esd . _exptl_crystal_grow.time . _exptl_crystal_grow.pdbx_details 'MPF, Na Cacodylate, NaCl, KCl' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.ambient_environment . _diffrn.ambient_temp 100 _diffrn.ambient_temp_details . _diffrn.ambient_temp_esd . _diffrn.crystal_id 1 _diffrn.crystal_support . _diffrn.crystal_treatment . _diffrn.details . _diffrn.id 1 _diffrn.ambient_pressure . _diffrn.ambient_pressure_esd . _diffrn.ambient_pressure_gt . _diffrn.ambient_pressure_lt . _diffrn.ambient_temp_gt . _diffrn.ambient_temp_lt . # _diffrn_detector.details . _diffrn_detector.detector CCD _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.area_resol_mean . _diffrn_detector.dtime . _diffrn_detector.pdbx_frames_total . _diffrn_detector.pdbx_collection_time_total . _diffrn_detector.pdbx_collection_date 2004-06-26 # _diffrn_radiation.collimation . _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge . _diffrn_radiation.inhomogeneity . _diffrn_radiation.monochromator . _diffrn_radiation.polarisn_norm . _diffrn_radiation.polarisn_ratio . _diffrn_radiation.probe . _diffrn_radiation.type . _diffrn_radiation.xray_symbol . _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l . _diffrn_radiation.pdbx_wavelength_list . _diffrn_radiation.pdbx_wavelength . _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer . _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9357 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current . _diffrn_source.details . _diffrn_source.diffrn_id 1 _diffrn_source.power . _diffrn_source.size . _diffrn_source.source SYNCHROTRON _diffrn_source.target . _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.voltage . _diffrn_source.take-off_angle . _diffrn_source.pdbx_wavelength_list 0.9357 _diffrn_source.pdbx_wavelength . _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_synchrotron_site ESRF # _reflns.B_iso_Wilson_estimate . _reflns.entry_id 4P20 _reflns.data_reduction_details . _reflns.data_reduction_method . _reflns.d_resolution_high 2.700 _reflns.d_resolution_low 32.820 _reflns.details . _reflns.limit_h_max . _reflns.limit_h_min . _reflns.limit_k_max . _reflns.limit_k_min . _reflns.limit_l_max . _reflns.limit_l_min . _reflns.number_all . _reflns.number_obs 4398 _reflns.observed_criterion . _reflns.observed_criterion_F_max . _reflns.observed_criterion_F_min . _reflns.observed_criterion_I_max . _reflns.observed_criterion_I_min . _reflns.observed_criterion_sigma_F . _reflns.observed_criterion_sigma_I . _reflns.percent_possible_obs 100.000 _reflns.R_free_details . _reflns.Rmerge_F_all . _reflns.Rmerge_F_obs . _reflns.Friedel_coverage . _reflns.number_gt . _reflns.threshold_expression . _reflns.pdbx_redundancy 3.590 _reflns.pdbx_Rmerge_I_obs 0.160 _reflns.pdbx_Rmerge_I_all . _reflns.pdbx_Rsym_value . _reflns.pdbx_netI_over_av_sigmaI . _reflns.pdbx_netI_over_sigmaI 4.800 _reflns.pdbx_res_netI_over_av_sigmaI_2 . _reflns.pdbx_res_netI_over_sigmaI_2 . _reflns.pdbx_chi_squared 0.960 _reflns.pdbx_scaling_rejects 120 _reflns.pdbx_d_res_high_opt . _reflns.pdbx_d_res_low_opt . _reflns.pdbx_d_res_opt_method . _reflns.phase_calculation_details . _reflns.pdbx_Rrim_I_all . _reflns.pdbx_Rpim_I_all . _reflns.pdbx_d_opt . _reflns.pdbx_number_measured_all 15897 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.meanI_over_sigI_all _reflns_shell.meanI_over_sigI_obs _reflns_shell.number_measured_all _reflns_shell.number_measured_obs _reflns_shell.number_possible _reflns_shell.number_unique_all _reflns_shell.number_unique_obs _reflns_shell.percent_possible_all _reflns_shell.percent_possible_obs _reflns_shell.Rmerge_F_all _reflns_shell.Rmerge_F_obs _reflns_shell.Rmerge_I_all _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_gt _reflns_shell.meanI_over_uI_all _reflns_shell.meanI_over_uI_gt _reflns_shell.number_measured_gt _reflns_shell.number_unique_gt _reflns_shell.percent_possible_gt _reflns_shell.Rmerge_F_gt _reflns_shell.Rmerge_I_gt _reflns_shell.pdbx_redundancy _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_netI_over_sigmaI_all _reflns_shell.pdbx_netI_over_sigmaI_obs _reflns_shell.pdbx_Rrim_I_all _reflns_shell.pdbx_Rpim_I_all _reflns_shell.pdbx_rejects _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.700 2.800 . 2.000 1607 . . 445 . 100.000 . . . . 0.432 . . . . . . . . 3.610 . 0.590 . . . . 0 1 1 2.800 2.910 . 2.600 1555 . . 424 . 100.000 . . . . 0.304 . . . . . . . . 3.670 . 0.610 . . . . 0 2 1 2.910 3.040 . 2.800 1578 . . 431 . 100.000 . . . . 0.269 . . . . . . . . 3.660 . 0.650 . . . . 0 3 1 3.040 3.200 . 4.400 1596 . . 434 . 100.000 . . . . 0.167 . . . . . . . . 3.660 . 0.920 . . . . 7 4 1 3.200 3.400 . 5.200 1608 . . 436 . 99.800 . . . . 0.151 . . . . . . . . 3.660 . 0.990 . . . . 13 5 1 3.400 3.660 . 5.400 1646 . . 447 . 99.800 . . . . 0.148 . . . . . . . . 3.630 . 1.010 . . . . 22 6 1 3.660 4.030 . 7.200 1558 . . 426 . 99.800 . . . . 0.130 . . . . . . . . 3.610 . 1.170 . . . . 20 7 1 4.030 4.610 . 5.200 1599 . . 439 . 100.000 . . . . 0.180 . . . . . . . . 3.620 . 1.240 . . . . 8 8 1 4.610 5.810 . 5.900 1595 . . 450 . 100.000 . . . . 0.159 . . . . . . . . 3.520 . 1.170 . . . . 11 9 1 5.810 32.820 . 7.900 1555 . . 466 . 100.000 . . . . 0.132 . . . . . . . . 3.250 . 1.320 . . . . 39 10 1 # _refine.aniso_B[1][1] -9.8000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 11.5700 _refine.aniso_B[2][2] 1.7740 _refine.aniso_B[2][3] 0.0000 _refine.aniso_B[3][3] 8.0260 _refine.B_iso_max 120.730 _refine.B_iso_mean 45.5528 _refine.B_iso_min 10.200 _refine.correlation_coeff_Fo_to_Fc . _refine.correlation_coeff_Fo_to_Fc_free . _refine.details . _refine.diff_density_max . _refine.diff_density_max_esd . _refine.diff_density_min . _refine.diff_density_min_esd . _refine.diff_density_rms . _refine.diff_density_rms_esd . _refine.entry_id 4P20 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details . _refine.ls_abs_structure_Flack . _refine.ls_abs_structure_Flack_esd . _refine.ls_abs_structure_Rogers . _refine.ls_abs_structure_Rogers_esd . _refine.ls_d_res_high 2.7000 _refine.ls_d_res_low 10.0000 _refine.ls_extinction_coef . _refine.ls_extinction_coef_esd . _refine.ls_extinction_expression . _refine.ls_extinction_method . _refine.ls_goodness_of_fit_all . _refine.ls_goodness_of_fit_all_esd . _refine.ls_goodness_of_fit_obs . _refine.ls_goodness_of_fit_obs_esd . _refine.ls_hydrogen_treatment . _refine.ls_matrix_type . _refine.ls_number_constraints . _refine.ls_number_parameters . _refine.ls_number_reflns_all . _refine.ls_number_reflns_obs 4118 _refine.ls_number_reflns_R_free 425 _refine.ls_number_reflns_R_work 3693 _refine.ls_number_restraints . _refine.ls_percent_reflns_obs 95.7000 _refine.ls_percent_reflns_R_free 9.9000 _refine.ls_R_factor_all . _refine.ls_R_factor_obs . _refine.ls_R_factor_R_free 0.2679 _refine.ls_R_factor_R_free_error . _refine.ls_R_factor_R_free_error_details . _refine.ls_R_factor_R_work 0.2134 _refine.ls_R_Fsqd_factor_obs . _refine.ls_R_I_factor_obs . _refine.ls_redundancy_reflns_all . _refine.ls_redundancy_reflns_obs . _refine.ls_restrained_S_all . _refine.ls_restrained_S_obs . _refine.ls_shift_over_esd_max . _refine.ls_shift_over_esd_mean . _refine.ls_structure_factor_coef . _refine.ls_weighting_details . _refine.ls_weighting_scheme . _refine.ls_wR_factor_all . _refine.ls_wR_factor_obs . _refine.ls_wR_factor_R_free . _refine.ls_wR_factor_R_work . _refine.occupancy_max . _refine.occupancy_min . _refine.overall_SU_B . _refine.overall_SU_ML . _refine.overall_SU_R_Cruickshank_DPI . _refine.overall_SU_R_free . _refine.overall_FOM_free_R_set . _refine.overall_FOM_work_R_set 0.8070 _refine.solvent_model_details . _refine.solvent_model_param_bsol 64.5977 _refine.solvent_model_param_ksol . _refine.ls_R_factor_gt . _refine.ls_goodness_of_fit_gt . _refine.ls_goodness_of_fit_ref . _refine.ls_shift_over_su_max . _refine.ls_shift_over_su_max_lt . _refine.ls_shift_over_su_mean . _refine.ls_shift_over_su_mean_lt . _refine.pdbx_ls_sigma_I . _refine.pdbx_ls_sigma_F 179.000 _refine.pdbx_ls_sigma_Fsqd . _refine.pdbx_data_cutoff_high_absF . _refine.pdbx_data_cutoff_high_rms_absF . _refine.pdbx_data_cutoff_low_absF . _refine.pdbx_isotropic_thermal_model . _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model . _refine.pdbx_stereochemistry_target_values . _refine.pdbx_R_Free_selection_details . _refine.pdbx_stereochem_target_val_spec_case . _refine.pdbx_overall_ESU_R . _refine.pdbx_overall_ESU_R_Free . _refine.pdbx_solvent_vdw_probe_radii . _refine.pdbx_solvent_ion_probe_radii . _refine.pdbx_solvent_shrinkage_radii . _refine.pdbx_real_space_R . _refine.pdbx_density_correlation . _refine.pdbx_pd_number_of_powder_patterns . _refine.pdbx_pd_number_of_points . _refine.pdbx_pd_meas_number_of_points . _refine.pdbx_pd_proc_ls_prof_R_factor . _refine.pdbx_pd_proc_ls_prof_wR_factor . _refine.pdbx_pd_Marquardt_correlation_coeff . _refine.pdbx_pd_Fsqrd_R_factor . _refine.pdbx_pd_ls_matrix_band_width . _refine.pdbx_overall_phase_error . _refine.pdbx_overall_SU_R_free_Cruickshank_DPI . _refine.pdbx_overall_SU_R_free_Blow_DPI . _refine.pdbx_overall_SU_R_Blow_DPI . _refine.pdbx_TLS_residual_ADP_flag . _refine.pdbx_diffrn_id 1 # _refine_hist.cycle_id final _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.d_res_high 2.7000 _refine_hist.d_res_low 10.0000 _refine_hist.pdbx_number_atoms_ligand 80 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 1053 _refine_hist.pdbx_number_residues_total 42 _refine_hist.pdbx_B_iso_mean_ligand 42.97 _refine_hist.pdbx_B_iso_mean_solvent 39.55 _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 898 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' . 0.000 1.500 . . c_mcbond_it . . 'X-RAY DIFFRACTION' . 5.008 2.000 . . c_scbond_it . . 'X-RAY DIFFRACTION' . 0.000 2.000 . . c_mcangle_it . . 'X-RAY DIFFRACTION' . 6.969 2.500 . . c_scangle_it . . # loop_ _pdbx_xplor_file.pdbx_refine_id _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file 'X-RAY DIFFRACTION' 1 CNS_TOPPAR:protein_rep.param ? 'X-RAY DIFFRACTION' 2 CNS_TOPPAR:dna-rna_rep.param ? 'X-RAY DIFFRACTION' 3 CNS_TOPPAR:water_rep.param ? 'X-RAY DIFFRACTION' 4 CNS_TOPPAR:ion.param ? 'X-RAY DIFFRACTION' 5 amika_xplor.param ? # _struct.entry_id 4P20 _struct.title 'Crystal structures of the bacterial ribosomal decoding site complexed with amikacin' _struct.pdbx_model_details . _struct.pdbx_formula_weight . _struct.pdbx_formula_weight_method . _struct.pdbx_model_type_details . _struct.pdbx_CASP_flag . # _struct_keywords.entry_id 4P20 _struct_keywords.text 'AMINOGLYCOSIDE, HABA GROUP, RIBOSOMAL DECODING SITE, X-RAY ANALYSIS, RNA, AMIKACIN, RNA-ANTIBIOTIC complex' _struct_keywords.pdbx_keywords RNA/ANTIBIOTIC # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 3 ? F N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4P20 _struct_ref.pdbx_db_accession 4P20 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4P20 A 1 ? 23 ? 4P20 0 ? 22 ? 0 22 2 1 4P20 B 1 ? 23 ? 4P20 22 ? 44 ? 22 44 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4210 ? 1 MORE -23 ? 1 'SSA (A^2)' 7660 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 23 N3 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 23 O2 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 23 N4 ? ? A G 2 B C 44 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 4 N3 ? ? ? 1_555 B G 22 N1 ? ? A C 3 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 4 N4 ? ? ? 1_555 B G 22 O6 ? ? A C 3 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 4 O2 ? ? ? 1_555 B G 22 N2 ? ? A C 3 B G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 21 N3 ? ? A G 4 B C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 21 O2 ? ? A G 4 B C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 21 N4 ? ? A G 4 B C 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A U 6 O4 ? ? ? 1_555 B U 20 N3 ? ? A U 5 B U 41 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog11 hydrog ? ? A C 7 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 7 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 7 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 6 B G 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 9 N3 ? ? ? 1_555 B G 16 N1 ? ? A C 8 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 9 N4 ? ? ? 1_555 B G 16 O6 ? ? A C 8 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A C 9 O2 ? ? ? 1_555 B G 16 N2 ? ? A C 8 B G 37 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 10 N1 ? ? ? 1_555 B U 15 N3 ? ? A A 9 B U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 10 N6 ? ? ? 1_555 B U 15 O4 ? ? A A 9 B U 36 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 11 N3 ? ? ? 1_555 B G 14 N1 ? ? A C 10 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 11 N4 ? ? ? 1_555 B G 14 O6 ? ? A C 10 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A C 11 O2 ? ? ? 1_555 B G 14 N2 ? ? A C 10 B G 35 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 11 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 11 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 11 B G 34 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 13 N1 ? ? ? 1_555 B C 12 N3 ? ? A G 12 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A G 13 N2 ? ? ? 1_555 B C 12 O2 ? ? A G 12 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A G 13 O6 ? ? ? 1_555 B C 12 N4 ? ? A G 12 B C 33 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 13 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 13 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 13 B C 32 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 15 N3 ? ? ? 1_555 B A 10 N1 ? ? A U 14 B A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 15 O4 ? ? ? 1_555 B A 10 N6 ? ? A U 14 B A 31 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A G 16 N1 ? ? ? 1_555 B C 9 N3 ? ? A G 15 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A G 16 N2 ? ? ? 1_555 B C 9 O2 ? ? A G 15 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 16 O6 ? ? ? 1_555 B C 9 N4 ? ? A G 15 B C 30 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A G 19 N1 ? ? ? 1_555 B C 7 N3 ? ? A G 18 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A G 19 N2 ? ? ? 1_555 B C 7 O2 ? ? A G 18 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A G 19 O6 ? ? ? 1_555 B C 7 N4 ? ? A G 18 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A U 20 N3 ? ? ? 1_555 B U 6 O4 ? ? A U 19 B U 27 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog40 hydrog ? ? A C 21 N3 ? ? ? 1_555 B G 5 N1 ? ? A C 20 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 21 N4 ? ? ? 1_555 B G 5 O6 ? ? A C 20 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 20 B G 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 4 N3 ? ? A G 21 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 4 O2 ? ? A G 21 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 4 N4 ? ? A G 21 B C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A C 23 N3 ? ? ? 1_555 B G 3 N1 ? ? A C 22 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A C 23 N4 ? ? ? 1_555 B G 3 O6 ? ? A C 22 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 3 N2 ? ? A C 22 B G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A AKN 101 ? 15 'binding site for residue AKN A 101' AC2 Software B AKN 101 ? 16 'binding site for residue AKN B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 G A 16 ? G A 15 . ? 1_555 ? 2 AC1 15 A A 17 ? A A 16 . ? 1_555 ? 3 AC1 15 A A 18 ? A A 17 . ? 1_555 ? 4 AC1 15 G A 19 ? G A 18 . ? 1_555 ? 5 AC1 15 U A 20 ? U A 19 . ? 1_555 ? 6 AC1 15 C A 21 ? C A 20 . ? 1_555 ? 7 AC1 15 G A 22 ? G A 21 . ? 1_555 ? 8 AC1 15 C A 23 ? C A 22 . ? 1_555 ? 9 AC1 15 HOH E . ? HOH A 233 . ? 1_555 ? 10 AC1 15 G B 3 ? G B 24 . ? 1_555 ? 11 AC1 15 C B 4 ? C B 25 . ? 1_555 ? 12 AC1 15 G B 5 ? G B 26 . ? 1_555 ? 13 AC1 15 U B 6 ? U B 27 . ? 1_555 ? 14 AC1 15 C B 7 ? C B 28 . ? 1_555 ? 15 AC1 15 A B 8 ? A B 29 . ? 1_555 ? 16 AC2 16 G A 3 ? G A 2 . ? 1_555 ? 17 AC2 16 C A 4 ? C A 3 . ? 1_555 ? 18 AC2 16 G A 5 ? G A 4 . ? 1_555 ? 19 AC2 16 C A 7 ? C A 6 . ? 1_555 ? 20 AC2 16 A A 8 ? A A 7 . ? 1_555 ? 21 AC2 16 G B 16 ? G B 37 . ? 1_555 ? 22 AC2 16 A B 17 ? A B 38 . ? 1_555 ? 23 AC2 16 A B 18 ? A B 39 . ? 1_555 ? 24 AC2 16 G B 19 ? G B 40 . ? 1_555 ? 25 AC2 16 U B 20 ? U B 41 . ? 1_555 ? 26 AC2 16 C B 21 ? C B 42 . ? 1_555 ? 27 AC2 16 G B 22 ? G B 43 . ? 1_555 ? 28 AC2 16 C B 23 ? C B 44 . ? 1_555 ? 29 AC2 16 HOH F . ? HOH B 203 . ? 1_555 ? 30 AC2 16 HOH F . ? HOH B 207 . ? 1_555 ? 31 AC2 16 HOH F . ? HOH B 222 . ? 1_555 ? # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id U _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 5 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.071 _pdbx_validate_planes.type 'SIDE CHAIN' # _phasing.method MR # _pdbx_distant_solvent_atoms.id 1 _pdbx_distant_solvent_atoms.PDB_model_num 1 _pdbx_distant_solvent_atoms.auth_atom_id O _pdbx_distant_solvent_atoms.label_alt_id ? _pdbx_distant_solvent_atoms.auth_asym_id B _pdbx_distant_solvent_atoms.auth_comp_id HOH _pdbx_distant_solvent_atoms.auth_seq_id 223 _pdbx_distant_solvent_atoms.PDB_ins_code ? _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance 5.86 _pdbx_distant_solvent_atoms.neighbor_ligand_distance . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A U 0 ? A U 1 2 1 Y 1 A U 1 ? A U 2 3 1 Y 1 B U 22 ? B U 1 4 1 Y 1 B U 23 ? B U 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 AKN C1 C N R 38 AKN C3 C N R 39 AKN C4 C N S 40 AKN C5 C N S 41 AKN C7 C N R 42 AKN C9 C N N 43 AKN O6 O N N 44 AKN O2 O N N 45 AKN O8 O N N 46 AKN N10 N N N 47 AKN C11 C N R 48 AKN N12 N N N 49 AKN C13 C N N 50 AKN C14 C N S 51 AKN N15 N N N 52 AKN C16 C N R 53 AKN C17 C N S 54 AKN O18 O N N 55 AKN C19 C N S 56 AKN O20 O N N 57 AKN C21 C N S 58 AKN C22 C N R 59 AKN O23 O N N 60 AKN C24 C N S 61 AKN N25 N N N 62 AKN C26 C N S 63 AKN O27 O N N 64 AKN C28 C N R 65 AKN O29 O N N 66 AKN C30 C N N 67 AKN O31 O N N 68 AKN O32 O N N 69 AKN O33 O N N 70 AKN N37 N N N 71 AKN C35 C N N 72 AKN O36 O N N 73 AKN C37 C N S 74 AKN C38 C N N 75 AKN C39 C N N 76 AKN O40 O N N 77 AKN H1 H N N 78 AKN H2 H N N 79 AKN H3 H N N 80 AKN H4 H N N 81 AKN H5 H N N 82 AKN H6 H N N 83 AKN H7 H N N 84 AKN H8 H N N 85 AKN H9 H N N 86 AKN H10 H N N 87 AKN H12 H N N 88 AKN H13 H N N 89 AKN H14 H N N 90 AKN H15 H N N 91 AKN H16 H N N 92 AKN H17 H N N 93 AKN H18 H N N 94 AKN H20 H N N 95 AKN H21 H N N 96 AKN H22 H N N 97 AKN H23 H N N 98 AKN H24 H N N 99 AKN H25 H N N 100 AKN H26 H N N 101 AKN H27 H N N 102 AKN H28 H N N 103 AKN H29 H N N 104 AKN H31 H N N 105 AKN H32 H N N 106 AKN H33 H N N 107 AKN H34 H N N 108 AKN H35 H N N 109 AKN H36 H N N 110 AKN H37 H N N 111 AKN H38 H N N 112 AKN H39 H N N 113 AKN H40 H N N 114 AKN H42 H N N 115 AKN H43 H N N 116 AKN H44 H N N 117 AKN H45 H N N 118 AKN H46 H N N 119 AKN H47 H N N 120 C OP3 O N N 121 C P P N N 122 C OP1 O N N 123 C OP2 O N N 124 C "O5'" O N N 125 C "C5'" C N N 126 C "C4'" C N R 127 C "O4'" O N N 128 C "C3'" C N S 129 C "O3'" O N N 130 C "C2'" C N R 131 C "O2'" O N N 132 C "C1'" C N R 133 C N1 N N N 134 C C2 C N N 135 C O2 O N N 136 C N3 N N N 137 C C4 C N N 138 C N4 N N N 139 C C5 C N N 140 C C6 C N N 141 C HOP3 H N N 142 C HOP2 H N N 143 C "H5'" H N N 144 C "H5''" H N N 145 C "H4'" H N N 146 C "H3'" H N N 147 C "HO3'" H N N 148 C "H2'" H N N 149 C "HO2'" H N N 150 C "H1'" H N N 151 C H41 H N N 152 C H42 H N N 153 C H5 H N N 154 C H6 H N N 155 G OP3 O N N 156 G P P N N 157 G OP1 O N N 158 G OP2 O N N 159 G "O5'" O N N 160 G "C5'" C N N 161 G "C4'" C N R 162 G "O4'" O N N 163 G "C3'" C N S 164 G "O3'" O N N 165 G "C2'" C N R 166 G "O2'" O N N 167 G "C1'" C N R 168 G N9 N Y N 169 G C8 C Y N 170 G N7 N Y N 171 G C5 C Y N 172 G C6 C N N 173 G O6 O N N 174 G N1 N N N 175 G C2 C N N 176 G N2 N N N 177 G N3 N N N 178 G C4 C Y N 179 G HOP3 H N N 180 G HOP2 H N N 181 G "H5'" H N N 182 G "H5''" H N N 183 G "H4'" H N N 184 G "H3'" H N N 185 G "HO3'" H N N 186 G "H2'" H N N 187 G "HO2'" H N N 188 G "H1'" H N N 189 G H8 H N N 190 G H1 H N N 191 G H21 H N N 192 G H22 H N N 193 HOH O O N N 194 HOH H1 H N N 195 HOH H2 H N N 196 U OP3 O N N 197 U P P N N 198 U OP1 O N N 199 U OP2 O N N 200 U "O5'" O N N 201 U "C5'" C N N 202 U "C4'" C N R 203 U "O4'" O N N 204 U "C3'" C N S 205 U "O3'" O N N 206 U "C2'" C N R 207 U "O2'" O N N 208 U "C1'" C N R 209 U N1 N N N 210 U C2 C N N 211 U O2 O N N 212 U N3 N N N 213 U C4 C N N 214 U O4 O N N 215 U C5 C N N 216 U C6 C N N 217 U HOP3 H N N 218 U HOP2 H N N 219 U "H5'" H N N 220 U "H5''" H N N 221 U "H4'" H N N 222 U "H3'" H N N 223 U "HO3'" H N N 224 U "H2'" H N N 225 U "HO2'" H N N 226 U "H1'" H N N 227 U H3 H N N 228 U H5 H N N 229 U H6 H N N 230 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 AKN O6 C5 sing N N 40 AKN C9 C7 sing N N 41 AKN C9 N10 sing N N 42 AKN C5 C7 sing N N 43 AKN C5 C4 sing N N 44 AKN O33 C4 sing N N 45 AKN C7 O8 sing N N 46 AKN N15 C14 sing N N 47 AKN C4 C3 sing N N 48 AKN C14 C13 sing N N 49 AKN C14 C16 sing N N 50 AKN O8 C1 sing N N 51 AKN O2 C1 sing N N 52 AKN O2 C16 sing N N 53 AKN C3 C1 sing N N 54 AKN C3 O32 sing N N 55 AKN C13 C11 sing N N 56 AKN C16 C17 sing N N 57 AKN O36 C35 doub N N 58 AKN C11 N12 sing N N 59 AKN C11 C19 sing N N 60 AKN C35 N12 sing N N 61 AKN C35 C37 sing N N 62 AKN C17 C19 sing N N 63 AKN C17 O18 sing N N 64 AKN C37 O40 sing N N 65 AKN C37 C38 sing N N 66 AKN C19 O20 sing N N 67 AKN C38 C39 sing N N 68 AKN C39 N37 sing N N 69 AKN O20 C21 sing N N 70 AKN O23 C22 sing N N 71 AKN C21 C22 sing N N 72 AKN C21 O29 sing N N 73 AKN C22 C24 sing N N 74 AKN O29 C28 sing N N 75 AKN C24 N25 sing N N 76 AKN C24 C26 sing N N 77 AKN C28 C26 sing N N 78 AKN C28 C30 sing N N 79 AKN C26 O27 sing N N 80 AKN C30 O31 sing N N 81 AKN C1 H1 sing N N 82 AKN C3 H2 sing N N 83 AKN C4 H3 sing N N 84 AKN C5 H4 sing N N 85 AKN C7 H5 sing N N 86 AKN C9 H6 sing N N 87 AKN C9 H7 sing N N 88 AKN O6 H8 sing N N 89 AKN N10 H9 sing N N 90 AKN N10 H10 sing N N 91 AKN C11 H12 sing N N 92 AKN N12 H13 sing N N 93 AKN C13 H14 sing N N 94 AKN C13 H15 sing N N 95 AKN C14 H16 sing N N 96 AKN N15 H17 sing N N 97 AKN N15 H18 sing N N 98 AKN C16 H20 sing N N 99 AKN C17 H21 sing N N 100 AKN O18 H22 sing N N 101 AKN C19 H23 sing N N 102 AKN C21 H24 sing N N 103 AKN C22 H25 sing N N 104 AKN O23 H26 sing N N 105 AKN C24 H27 sing N N 106 AKN N25 H28 sing N N 107 AKN N25 H29 sing N N 108 AKN C26 H31 sing N N 109 AKN O27 H32 sing N N 110 AKN C28 H33 sing N N 111 AKN C30 H34 sing N N 112 AKN C30 H35 sing N N 113 AKN O31 H36 sing N N 114 AKN O32 H37 sing N N 115 AKN O33 H38 sing N N 116 AKN N37 H39 sing N N 117 AKN N37 H40 sing N N 118 AKN C37 H42 sing N N 119 AKN C38 H43 sing N N 120 AKN C38 H44 sing N N 121 AKN C39 H45 sing N N 122 AKN C39 H46 sing N N 123 AKN O40 H47 sing N N 124 C OP3 P sing N N 125 C OP3 HOP3 sing N N 126 C P OP1 doub N N 127 C P OP2 sing N N 128 C P "O5'" sing N N 129 C OP2 HOP2 sing N N 130 C "O5'" "C5'" sing N N 131 C "C5'" "C4'" sing N N 132 C "C5'" "H5'" sing N N 133 C "C5'" "H5''" sing N N 134 C "C4'" "O4'" sing N N 135 C "C4'" "C3'" sing N N 136 C "C4'" "H4'" sing N N 137 C "O4'" "C1'" sing N N 138 C "C3'" "O3'" sing N N 139 C "C3'" "C2'" sing N N 140 C "C3'" "H3'" sing N N 141 C "O3'" "HO3'" sing N N 142 C "C2'" "O2'" sing N N 143 C "C2'" "C1'" sing N N 144 C "C2'" "H2'" sing N N 145 C "O2'" "HO2'" sing N N 146 C "C1'" N1 sing N N 147 C "C1'" "H1'" sing N N 148 C N1 C2 sing N N 149 C N1 C6 sing N N 150 C C2 O2 doub N N 151 C C2 N3 sing N N 152 C N3 C4 doub N N 153 C C4 N4 sing N N 154 C C4 C5 sing N N 155 C N4 H41 sing N N 156 C N4 H42 sing N N 157 C C5 C6 doub N N 158 C C5 H5 sing N N 159 C C6 H6 sing N N 160 G OP3 P sing N N 161 G OP3 HOP3 sing N N 162 G P OP1 doub N N 163 G P OP2 sing N N 164 G P "O5'" sing N N 165 G OP2 HOP2 sing N N 166 G "O5'" "C5'" sing N N 167 G "C5'" "C4'" sing N N 168 G "C5'" "H5'" sing N N 169 G "C5'" "H5''" sing N N 170 G "C4'" "O4'" sing N N 171 G "C4'" "C3'" sing N N 172 G "C4'" "H4'" sing N N 173 G "O4'" "C1'" sing N N 174 G "C3'" "O3'" sing N N 175 G "C3'" "C2'" sing N N 176 G "C3'" "H3'" sing N N 177 G "O3'" "HO3'" sing N N 178 G "C2'" "O2'" sing N N 179 G "C2'" "C1'" sing N N 180 G "C2'" "H2'" sing N N 181 G "O2'" "HO2'" sing N N 182 G "C1'" N9 sing N N 183 G "C1'" "H1'" sing N N 184 G N9 C8 sing Y N 185 G N9 C4 sing Y N 186 G C8 N7 doub Y N 187 G C8 H8 sing N N 188 G N7 C5 sing Y N 189 G C5 C6 sing N N 190 G C5 C4 doub Y N 191 G C6 O6 doub N N 192 G C6 N1 sing N N 193 G N1 C2 sing N N 194 G N1 H1 sing N N 195 G C2 N2 sing N N 196 G C2 N3 doub N N 197 G N2 H21 sing N N 198 G N2 H22 sing N N 199 G N3 C4 sing N N 200 HOH O H1 sing N N 201 HOH O H2 sing N N 202 U OP3 P sing N N 203 U OP3 HOP3 sing N N 204 U P OP1 doub N N 205 U P OP2 sing N N 206 U P "O5'" sing N N 207 U OP2 HOP2 sing N N 208 U "O5'" "C5'" sing N N 209 U "C5'" "C4'" sing N N 210 U "C5'" "H5'" sing N N 211 U "C5'" "H5''" sing N N 212 U "C4'" "O4'" sing N N 213 U "C4'" "C3'" sing N N 214 U "C4'" "H4'" sing N N 215 U "O4'" "C1'" sing N N 216 U "C3'" "O3'" sing N N 217 U "C3'" "C2'" sing N N 218 U "C3'" "H3'" sing N N 219 U "O3'" "HO3'" sing N N 220 U "C2'" "O2'" sing N N 221 U "C2'" "C1'" sing N N 222 U "C2'" "H2'" sing N N 223 U "O2'" "HO2'" sing N N 224 U "C1'" N1 sing N N 225 U "C1'" "H1'" sing N N 226 U N1 C2 sing N N 227 U N1 C6 sing N N 228 U C2 O2 doub N N 229 U C2 N3 sing N N 230 U N3 C4 sing N N 231 U N3 H3 sing N N 232 U C4 O4 doub N N 233 U C4 C5 sing N N 234 U C5 C6 doub N N 235 U C5 H5 sing N N 236 U C6 H6 sing N N 237 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4P20 'double helix' 4P20 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 3 1_555 B C 23 1_555 -0.192 -0.153 0.383 3.829 -7.384 1.850 1 A_G2:C44_B A 2 ? B 44 ? 19 1 1 A C 4 1_555 B G 22 1_555 0.090 -0.025 0.267 -1.454 -12.569 -1.760 2 A_C3:G43_B A 3 ? B 43 ? 19 1 1 A G 5 1_555 B C 21 1_555 -0.317 -0.010 0.040 3.609 -5.903 1.583 3 A_G4:C42_B A 4 ? B 42 ? 19 1 1 A U 6 1_555 B U 20 1_555 -2.758 -1.071 -1.270 10.070 -9.261 -27.554 4 A_U5:U41_B A 5 ? B 41 ? ? ? 1 A C 7 1_555 B G 19 1_555 0.373 -0.208 -0.196 -5.086 -0.342 -1.470 5 A_C6:G40_B A 6 ? B 40 ? 19 1 1 A C 9 1_555 B G 16 1_555 0.214 -0.132 0.011 7.101 -20.838 0.320 6 A_C8:G37_B A 8 ? B 37 ? 19 1 1 A A 10 1_555 B U 15 1_555 0.124 -0.080 -0.161 1.076 -18.388 1.939 7 A_A9:U36_B A 9 ? B 36 ? 20 1 1 A C 11 1_555 B G 14 1_555 0.296 -0.190 0.056 6.331 -18.283 -0.089 8 A_C10:G35_B A 10 ? B 35 ? 19 1 1 A C 12 1_555 B G 13 1_555 0.053 -0.122 0.442 -2.146 -4.110 2.117 9 A_C11:G34_B A 11 ? B 34 ? 19 1 1 A G 13 1_555 B C 12 1_555 -0.076 -0.109 0.319 -0.590 -9.055 -0.388 10 A_G12:C33_B A 12 ? B 33 ? 19 1 1 A G 14 1_555 B C 11 1_555 -0.049 -0.018 -0.107 -5.961 -17.569 2.168 11 A_G13:C32_B A 13 ? B 32 ? 19 1 1 A U 15 1_555 B A 10 1_555 -0.015 -0.131 -0.137 4.930 -11.392 0.705 12 A_U14:A31_B A 14 ? B 31 ? 20 1 1 A G 16 1_555 B C 9 1_555 -0.335 -0.046 -0.052 -15.766 -25.962 0.003 13 A_G15:C30_B A 15 ? B 30 ? 19 1 1 A G 19 1_555 B C 7 1_555 -0.242 -0.229 -0.233 4.399 1.924 -2.127 14 A_G18:C28_B A 18 ? B 28 ? 19 1 1 A U 20 1_555 B U 6 1_555 2.017 -1.312 -0.475 1.451 -6.581 -28.908 15 A_U19:U27_B A 19 ? B 27 ? ? ? 1 A C 21 1_555 B G 5 1_555 0.325 -0.251 -0.129 4.101 -0.051 -0.239 16 A_C20:G26_B A 20 ? B 26 ? 19 1 1 A G 22 1_555 B C 4 1_555 -0.152 -0.052 0.226 -2.854 -2.231 3.969 17 A_G21:C25_B A 21 ? B 25 ? 19 1 1 A C 23 1_555 B G 3 1_555 0.365 -0.076 0.434 -0.635 -3.250 6.447 18 A_C22:G24_B A 22 ? B 24 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 3 1_555 B C 23 1_555 A C 4 1_555 B G 22 1_555 -0.342 -1.866 3.416 -0.982 1.992 34.056 -3.506 0.422 3.313 3.396 1.675 34.126 1 AA_G2C3:G43C44_BB A 2 ? B 44 ? A 3 ? B 43 ? 1 A C 4 1_555 B G 22 1_555 A G 5 1_555 B C 21 1_555 -0.301 -1.947 2.969 0.498 6.366 27.571 -5.226 0.713 2.461 13.136 -1.027 28.287 2 AA_C3G4:C42G43_BB A 3 ? B 43 ? A 4 ? B 42 ? 1 A G 5 1_555 B C 21 1_555 A U 6 1_555 B U 20 1_555 -0.712 -2.139 3.212 7.205 3.628 18.480 -7.584 4.954 2.314 10.661 -21.176 20.150 3 AA_G4U5:U41C42_BB A 4 ? B 42 ? A 5 ? B 41 ? 1 A U 6 1_555 B U 20 1_555 A C 7 1_555 B G 19 1_555 2.036 -2.448 4.004 -5.027 4.448 46.687 -3.483 -3.023 3.545 5.578 6.305 47.141 4 AA_U5C6:G40U41_BB A 5 ? B 41 ? A 6 ? B 40 ? 1 A C 7 1_555 B G 19 1_555 A C 9 1_555 B G 16 1_555 1.314 -3.303 6.352 -10.294 14.274 77.339 -3.317 -1.553 5.592 11.286 8.139 79.009 5 AA_C6C8:G37G40_BB A 6 ? B 40 ? A 8 ? B 37 ? 1 A C 9 1_555 B G 16 1_555 A A 10 1_555 B U 15 1_555 -0.071 -1.563 3.340 1.036 15.652 30.404 -4.930 0.271 2.283 27.653 -1.831 34.127 6 AA_C8A9:U36G37_BB A 8 ? B 37 ? A 9 ? B 36 ? 1 A A 10 1_555 B U 15 1_555 A C 11 1_555 B G 14 1_555 0.670 -1.825 3.109 0.305 3.116 31.387 -3.894 -1.180 2.925 5.743 -0.563 31.539 7 AA_A9C10:G35U36_BB A 9 ? B 36 ? A 10 ? B 35 ? 1 A C 11 1_555 B G 14 1_555 A C 12 1_555 B G 13 1_555 -0.628 -2.050 3.496 -4.864 3.943 30.642 -4.584 0.202 3.272 7.365 9.086 31.260 8 AA_C10C11:G34G35_BB A 10 ? B 35 ? A 11 ? B 34 ? 1 A C 12 1_555 B G 13 1_555 A G 13 1_555 B C 12 1_555 -0.125 -1.656 3.072 0.295 7.040 30.429 -4.259 0.281 2.630 13.191 -0.552 31.215 9 AA_C11G12:C33G34_BB A 11 ? B 34 ? A 12 ? B 33 ? 1 A G 13 1_555 B C 12 1_555 A G 14 1_555 B C 11 1_555 0.391 -1.598 3.236 5.249 9.563 32.985 -4.049 0.096 2.710 16.297 -8.945 34.694 10 AA_G12G13:C32C33_BB A 12 ? B 33 ? A 13 ? B 32 ? 1 A G 14 1_555 B C 11 1_555 A U 15 1_555 B A 10 1_555 -0.163 -1.509 3.108 -0.267 -1.783 29.114 -2.622 0.267 3.194 -3.543 0.531 29.168 11 AA_G13U14:A31C32_BB A 13 ? B 32 ? A 14 ? B 31 ? 1 A U 15 1_555 B A 10 1_555 A G 16 1_555 B C 9 1_555 0.390 -1.453 3.559 2.059 22.078 33.941 -4.531 -0.338 2.259 33.729 -3.146 40.363 12 AA_U14G15:C30A31_BB A 14 ? B 31 ? A 15 ? B 30 ? 1 A G 16 1_555 B C 9 1_555 A G 19 1_555 B C 7 1_555 -1.554 -3.469 6.085 5.801 14.748 76.250 -3.506 1.530 5.336 11.823 -4.650 77.633 13 AA_G15G18:C28C30_BB A 15 ? B 30 ? A 18 ? B 28 ? 1 A G 19 1_555 B C 7 1_555 A U 20 1_555 B U 6 1_555 -1.645 -2.417 3.553 0.779 -1.924 45.326 -2.947 2.209 3.620 -2.495 -1.010 45.371 14 AA_G18U19:U27C28_BB A 18 ? B 28 ? A 19 ? B 27 ? 1 A U 20 1_555 B U 6 1_555 A C 21 1_555 B G 5 1_555 0.674 -2.647 3.293 -0.172 8.383 22.565 -8.680 -1.665 2.177 20.536 0.421 24.053 15 AA_U19C20:G26U27_BB A 19 ? B 27 ? A 20 ? B 26 ? 1 A C 21 1_555 B G 5 1_555 A G 22 1_555 B C 4 1_555 0.737 -1.668 3.288 -1.505 5.512 27.935 -4.585 -1.823 2.869 11.269 3.078 28.502 16 AA_C20G21:C25G26_BB A 20 ? B 26 ? A 21 ? B 25 ? 1 A G 22 1_555 B C 4 1_555 A C 23 1_555 B G 3 1_555 0.374 -2.243 3.149 0.826 -0.607 34.625 -3.676 -0.505 3.194 -1.019 -1.387 34.640 17 AA_G21C22:G24C25_BB A 21 ? B 25 ? A 22 ? B 24 ? # _atom_sites.entry_id 4P20 _atom_sites.fract_transf_matrix[1][1] 0.021030 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.007123 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030469 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020049 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_