HEADER VIRAL PROTEIN 01-MAR-14 4P25 TITLE STRUCTURE OF THE P DOMAIN FROM A GI.7 NOROVIRUS VARIANT IN COMPLEX TITLE 2 WITH LEY HBGA. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CAPSID PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GI.7/TCH-060/USA/2003; SOURCE 3 ORGANISM_TAXID: 1097017; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS P DOMAIN, CAPSID PROTEIN, NOROVIRUS, HBGA, LEY, LEWIS HBGA, VIRAL KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SHANKER,R.CZAKO,B.SANKARAN,R.ATMAR,M.ESTES,B.V.V.PRASAD REVDAT 5 27-DEC-23 4P25 1 HETSYN REVDAT 4 29-JUL-20 4P25 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 27-NOV-19 4P25 1 COMPND SOURCE JRNL REMARK REVDAT 3 2 1 DBREF LINK SITE ATOM REVDAT 2 21-MAY-14 4P25 1 JRNL REVDAT 1 02-APR-14 4P25 0 JRNL AUTH S.SHANKER,R.CZAKO,B.SANKARAN,R.L.ATMAR,M.K.ESTES,B.V.PRASAD JRNL TITL STRUCTURAL ANALYSIS OF DETERMINANTS OF HISTO-BLOOD GROUP JRNL TITL 2 ANTIGEN BINDING SPECIFICITY IN GENOGROUP I NOROVIRUSES. JRNL REF J.VIROL. V. 88 6168 2014 JRNL REFN ESSN 1098-5514 JRNL PMID 24648450 JRNL DOI 10.1128/JVI.00201-14 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.3 REMARK 3 NUMBER OF REFLECTIONS : 170635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.134 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 8552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.0092 - 4.6554 0.96 5591 307 0.1697 0.1649 REMARK 3 2 4.6554 - 3.6960 0.90 5280 266 0.1374 0.1465 REMARK 3 3 3.6960 - 3.2291 0.93 5441 297 0.1395 0.1640 REMARK 3 4 3.2291 - 2.9340 0.97 5647 301 0.1405 0.1591 REMARK 3 5 2.9340 - 2.7237 0.98 5706 308 0.1433 0.1707 REMARK 3 6 2.7237 - 2.5632 0.98 5725 334 0.1436 0.1772 REMARK 3 7 2.5632 - 2.4348 0.98 5713 275 0.1413 0.1744 REMARK 3 8 2.4348 - 2.3288 0.98 5698 307 0.1314 0.1737 REMARK 3 9 2.3288 - 2.2392 0.97 5721 279 0.1280 0.1834 REMARK 3 10 2.2392 - 2.1619 0.97 5666 305 0.1201 0.1828 REMARK 3 11 2.1619 - 2.0943 0.97 5723 291 0.1170 0.1562 REMARK 3 12 2.0943 - 2.0345 0.97 5704 264 0.1242 0.1977 REMARK 3 13 2.0345 - 1.9809 0.97 5686 272 0.1145 0.1657 REMARK 3 14 1.9809 - 1.9326 0.97 5656 302 0.1134 0.1828 REMARK 3 15 1.9326 - 1.8887 0.96 5630 292 0.1201 0.1810 REMARK 3 16 1.8887 - 1.8485 0.96 5631 303 0.1098 0.1665 REMARK 3 17 1.8485 - 1.8115 0.96 5615 289 0.1091 0.1820 REMARK 3 18 1.8115 - 1.7773 0.96 5615 294 0.1119 0.1860 REMARK 3 19 1.7773 - 1.7456 0.96 5619 306 0.1207 0.1812 REMARK 3 20 1.7456 - 1.7160 0.96 5564 308 0.1206 0.1974 REMARK 3 21 1.7160 - 1.6883 0.96 5605 308 0.1261 0.1947 REMARK 3 22 1.6883 - 1.6623 0.95 5600 288 0.1237 0.1903 REMARK 3 23 1.6623 - 1.6379 0.95 5578 280 0.1273 0.2016 REMARK 3 24 1.6379 - 1.6148 0.95 5530 326 0.1282 0.1981 REMARK 3 25 1.6148 - 1.5930 0.95 5528 289 0.1283 0.2029 REMARK 3 26 1.5930 - 1.5723 0.94 5535 286 0.1316 0.2167 REMARK 3 27 1.5723 - 1.5526 0.92 5330 320 0.1413 0.2201 REMARK 3 28 1.5526 - 1.5339 0.82 4810 246 0.1456 0.2258 REMARK 3 29 1.5339 - 1.5161 0.63 3633 196 0.1544 0.2324 REMARK 3 30 1.5161 - 1.4991 0.39 2303 113 0.1540 0.2410 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 9244 REMARK 3 ANGLE : 1.161 12669 REMARK 3 CHIRALITY : 0.071 1450 REMARK 3 PLANARITY : 0.006 1648 REMARK 3 DIHEDRAL : 12.132 3375 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P25 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97939 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 176762 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.499 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 28.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMATE 0.1M BIS TRIS REMARK 280 PROPANE 20% PEG3350, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 225 REMARK 465 GLU A 226 REMARK 465 GLN A 227 REMARK 465 LYS A 228 REMARK 465 THR A 229 REMARK 465 ARG A 230 REMARK 465 GLN A 231 REMARK 465 ASP A 341 REMARK 465 GLN A 342 REMARK 465 ASN A 343 REMARK 465 GLU A 409 REMARK 465 SER A 410 REMARK 465 ASN A 439 REMARK 465 THR A 440 REMARK 465 ALA B 225 REMARK 465 GLU B 226 REMARK 465 GLN B 227 REMARK 465 LYS B 228 REMARK 465 THR B 229 REMARK 465 GLN B 342 REMARK 465 ASN B 343 REMARK 465 LEU B 344 REMARK 465 SER B 345 REMARK 465 SER B 405 REMARK 465 THR B 406 REMARK 465 VAL B 407 REMARK 465 THR B 408 REMARK 465 GLU B 409 REMARK 465 ALA C 225 REMARK 465 GLU C 226 REMARK 465 GLN C 227 REMARK 465 LYS C 228 REMARK 465 THR C 229 REMARK 465 ARG C 230 REMARK 465 GLN C 231 REMARK 465 GLN C 342 REMARK 465 ASN C 343 REMARK 465 SER C 437 REMARK 465 GLY C 438 REMARK 465 ASN C 439 REMARK 465 THR C 440 REMARK 465 ALA C 441 REMARK 465 PHE D 317 REMARK 465 ASP D 341 REMARK 465 GLN D 342 REMARK 465 ASN D 343 REMARK 465 LEU D 344 REMARK 465 SER D 405 REMARK 465 THR D 406 REMARK 465 VAL D 407 REMARK 465 THR D 408 REMARK 465 GLU D 409 REMARK 465 SER D 410 REMARK 465 GLY D 421 REMARK 465 GLY D 438 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU C 344 CG CD1 CD2 REMARK 470 GLU D 318 CG CD OE1 OE2 REMARK 470 ASN D 439 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 739 O HOH D 956 1.93 REMARK 500 O HOH C 726 O HOH C 756 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 712 O HOH D 715 1645 2.01 REMARK 500 O HOH C 750 O HOH D 736 1645 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 265 45.04 -145.33 REMARK 500 PHE A 317 -115.67 -140.13 REMARK 500 ASN A 357 -159.22 -110.70 REMARK 500 GLN B 265 42.73 -141.86 REMARK 500 PHE B 317 -85.54 -142.39 REMARK 500 ASN B 357 -157.09 -110.48 REMARK 500 ALA B 441 58.06 -92.70 REMARK 500 GLN C 265 41.45 -145.25 REMARK 500 GLN C 373 -166.45 -103.21 REMARK 500 GLN D 265 44.88 -144.79 REMARK 500 GLN D 356 58.20 -90.65 REMARK 500 ASN D 357 -155.90 -109.91 REMARK 500 SER D 513 -60.35 -107.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 985 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH D 965 DISTANCE = 6.81 ANGSTROMS DBREF 4P25 A 226 525 UNP G8FL04 G8FL04_9CALI 226 525 DBREF 4P25 B 226 525 UNP G8FL04 G8FL04_9CALI 226 525 DBREF 4P25 C 226 525 UNP G8FL04 G8FL04_9CALI 226 525 DBREF 4P25 D 226 525 UNP G8FL04 G8FL04_9CALI 226 525 SEQADV 4P25 ALA A 225 UNP G8FL04 EXPRESSION TAG SEQADV 4P25 GLY A 526 UNP G8FL04 EXPRESSION TAG SEQADV 4P25 ALA B 225 UNP G8FL04 EXPRESSION TAG SEQADV 4P25 GLY B 526 UNP G8FL04 EXPRESSION TAG SEQADV 4P25 ALA C 225 UNP G8FL04 EXPRESSION TAG SEQADV 4P25 GLY C 526 UNP G8FL04 EXPRESSION TAG SEQADV 4P25 ALA D 225 UNP G8FL04 EXPRESSION TAG SEQADV 4P25 GLY D 526 UNP G8FL04 EXPRESSION TAG SEQRES 1 A 302 ALA GLU GLN LYS THR ARG GLN LEU THR VAL PRO ASN ILE SEQRES 2 A 302 PRO LEU ASN ASN LEU ALA ASN SER ARG VAL PRO ALA MET SEQRES 3 A 302 ILE ASN LYS MET THR VAL SER THR ASP GLN ASN GLN VAL SEQRES 4 A 302 VAL GLN PHE GLN ASN GLY ARG CYS THR LEU GLU GLY GLN SEQRES 5 A 302 LEU LEU GLY THR THR PRO VAL SER ALA SER GLN VAL ALA SEQRES 6 A 302 ARG ILE ARG GLY LYS VAL PHE SER THR ALA SER GLY LYS SEQRES 7 A 302 GLY LEU ASN LEU THR GLU LEU ASP GLY THR PRO TYR HIS SEQRES 8 A 302 ALA PHE GLU SER PRO ALA PRO LEU GLY PHE PRO ASP ILE SEQRES 9 A 302 GLY ALA CYS ASP TRP HIS VAL SER THR PHE LYS VAL ASP SEQRES 10 A 302 GLN ASN LEU SER GLY ASP PRO MET SER ARG LEU ASP VAL SEQRES 11 A 302 LYS GLN ASN ALA PRO PHE ALA PRO HIS LEU GLY SER ILE SEQRES 12 A 302 GLU PHE THR SER ASP GLN ASP PRO THR GLY ASP GLN LEU SEQRES 13 A 302 GLY THR LEU ALA TRP VAL SER PRO SER THR SER GLY ALA SEQRES 14 A 302 ARG VAL ASP PRO TRP LYS ILE PRO SER TYR GLY SER THR SEQRES 15 A 302 VAL THR GLU SER THR HIS LEU ALA PRO PRO ILE PHE PRO SEQRES 16 A 302 PRO GLY PHE GLY GLU ALA ILE VAL TYR PHE MET SER ASP SEQRES 17 A 302 PHE PRO ILE VAL SER GLY ASN THR ALA GLN VAL PRO CYS SEQRES 18 A 302 THR LEU PRO GLN GLU PHE VAL SER HIS PHE VAL GLU GLN SEQRES 19 A 302 GLN ALA PRO VAL ARG GLY GLU ALA ALA LEU LEU HIS TYR SEQRES 20 A 302 VAL ASP PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS SEQRES 21 A 302 LEU TYR PRO ASP GLY PHE ILE THR CYS VAL PRO ASN THR SEQRES 22 A 302 GLY GLY GLY PRO GLN ASN LEU PRO THR ASN GLY VAL PHE SEQRES 23 A 302 VAL PHE SER SER TRP VAL SER ARG TYR TYR GLN LEU LYS SEQRES 24 A 302 PRO VAL GLY SEQRES 1 B 302 ALA GLU GLN LYS THR ARG GLN LEU THR VAL PRO ASN ILE SEQRES 2 B 302 PRO LEU ASN ASN LEU ALA ASN SER ARG VAL PRO ALA MET SEQRES 3 B 302 ILE ASN LYS MET THR VAL SER THR ASP GLN ASN GLN VAL SEQRES 4 B 302 VAL GLN PHE GLN ASN GLY ARG CYS THR LEU GLU GLY GLN SEQRES 5 B 302 LEU LEU GLY THR THR PRO VAL SER ALA SER GLN VAL ALA SEQRES 6 B 302 ARG ILE ARG GLY LYS VAL PHE SER THR ALA SER GLY LYS SEQRES 7 B 302 GLY LEU ASN LEU THR GLU LEU ASP GLY THR PRO TYR HIS SEQRES 8 B 302 ALA PHE GLU SER PRO ALA PRO LEU GLY PHE PRO ASP ILE SEQRES 9 B 302 GLY ALA CYS ASP TRP HIS VAL SER THR PHE LYS VAL ASP SEQRES 10 B 302 GLN ASN LEU SER GLY ASP PRO MET SER ARG LEU ASP VAL SEQRES 11 B 302 LYS GLN ASN ALA PRO PHE ALA PRO HIS LEU GLY SER ILE SEQRES 12 B 302 GLU PHE THR SER ASP GLN ASP PRO THR GLY ASP GLN LEU SEQRES 13 B 302 GLY THR LEU ALA TRP VAL SER PRO SER THR SER GLY ALA SEQRES 14 B 302 ARG VAL ASP PRO TRP LYS ILE PRO SER TYR GLY SER THR SEQRES 15 B 302 VAL THR GLU SER THR HIS LEU ALA PRO PRO ILE PHE PRO SEQRES 16 B 302 PRO GLY PHE GLY GLU ALA ILE VAL TYR PHE MET SER ASP SEQRES 17 B 302 PHE PRO ILE VAL SER GLY ASN THR ALA GLN VAL PRO CYS SEQRES 18 B 302 THR LEU PRO GLN GLU PHE VAL SER HIS PHE VAL GLU GLN SEQRES 19 B 302 GLN ALA PRO VAL ARG GLY GLU ALA ALA LEU LEU HIS TYR SEQRES 20 B 302 VAL ASP PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS SEQRES 21 B 302 LEU TYR PRO ASP GLY PHE ILE THR CYS VAL PRO ASN THR SEQRES 22 B 302 GLY GLY GLY PRO GLN ASN LEU PRO THR ASN GLY VAL PHE SEQRES 23 B 302 VAL PHE SER SER TRP VAL SER ARG TYR TYR GLN LEU LYS SEQRES 24 B 302 PRO VAL GLY SEQRES 1 C 302 ALA GLU GLN LYS THR ARG GLN LEU THR VAL PRO ASN ILE SEQRES 2 C 302 PRO LEU ASN ASN LEU ALA ASN SER ARG VAL PRO ALA MET SEQRES 3 C 302 ILE ASN LYS MET THR VAL SER THR ASP GLN ASN GLN VAL SEQRES 4 C 302 VAL GLN PHE GLN ASN GLY ARG CYS THR LEU GLU GLY GLN SEQRES 5 C 302 LEU LEU GLY THR THR PRO VAL SER ALA SER GLN VAL ALA SEQRES 6 C 302 ARG ILE ARG GLY LYS VAL PHE SER THR ALA SER GLY LYS SEQRES 7 C 302 GLY LEU ASN LEU THR GLU LEU ASP GLY THR PRO TYR HIS SEQRES 8 C 302 ALA PHE GLU SER PRO ALA PRO LEU GLY PHE PRO ASP ILE SEQRES 9 C 302 GLY ALA CYS ASP TRP HIS VAL SER THR PHE LYS VAL ASP SEQRES 10 C 302 GLN ASN LEU SER GLY ASP PRO MET SER ARG LEU ASP VAL SEQRES 11 C 302 LYS GLN ASN ALA PRO PHE ALA PRO HIS LEU GLY SER ILE SEQRES 12 C 302 GLU PHE THR SER ASP GLN ASP PRO THR GLY ASP GLN LEU SEQRES 13 C 302 GLY THR LEU ALA TRP VAL SER PRO SER THR SER GLY ALA SEQRES 14 C 302 ARG VAL ASP PRO TRP LYS ILE PRO SER TYR GLY SER THR SEQRES 15 C 302 VAL THR GLU SER THR HIS LEU ALA PRO PRO ILE PHE PRO SEQRES 16 C 302 PRO GLY PHE GLY GLU ALA ILE VAL TYR PHE MET SER ASP SEQRES 17 C 302 PHE PRO ILE VAL SER GLY ASN THR ALA GLN VAL PRO CYS SEQRES 18 C 302 THR LEU PRO GLN GLU PHE VAL SER HIS PHE VAL GLU GLN SEQRES 19 C 302 GLN ALA PRO VAL ARG GLY GLU ALA ALA LEU LEU HIS TYR SEQRES 20 C 302 VAL ASP PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS SEQRES 21 C 302 LEU TYR PRO ASP GLY PHE ILE THR CYS VAL PRO ASN THR SEQRES 22 C 302 GLY GLY GLY PRO GLN ASN LEU PRO THR ASN GLY VAL PHE SEQRES 23 C 302 VAL PHE SER SER TRP VAL SER ARG TYR TYR GLN LEU LYS SEQRES 24 C 302 PRO VAL GLY SEQRES 1 D 302 ALA GLU GLN LYS THR ARG GLN LEU THR VAL PRO ASN ILE SEQRES 2 D 302 PRO LEU ASN ASN LEU ALA ASN SER ARG VAL PRO ALA MET SEQRES 3 D 302 ILE ASN LYS MET THR VAL SER THR ASP GLN ASN GLN VAL SEQRES 4 D 302 VAL GLN PHE GLN ASN GLY ARG CYS THR LEU GLU GLY GLN SEQRES 5 D 302 LEU LEU GLY THR THR PRO VAL SER ALA SER GLN VAL ALA SEQRES 6 D 302 ARG ILE ARG GLY LYS VAL PHE SER THR ALA SER GLY LYS SEQRES 7 D 302 GLY LEU ASN LEU THR GLU LEU ASP GLY THR PRO TYR HIS SEQRES 8 D 302 ALA PHE GLU SER PRO ALA PRO LEU GLY PHE PRO ASP ILE SEQRES 9 D 302 GLY ALA CYS ASP TRP HIS VAL SER THR PHE LYS VAL ASP SEQRES 10 D 302 GLN ASN LEU SER GLY ASP PRO MET SER ARG LEU ASP VAL SEQRES 11 D 302 LYS GLN ASN ALA PRO PHE ALA PRO HIS LEU GLY SER ILE SEQRES 12 D 302 GLU PHE THR SER ASP GLN ASP PRO THR GLY ASP GLN LEU SEQRES 13 D 302 GLY THR LEU ALA TRP VAL SER PRO SER THR SER GLY ALA SEQRES 14 D 302 ARG VAL ASP PRO TRP LYS ILE PRO SER TYR GLY SER THR SEQRES 15 D 302 VAL THR GLU SER THR HIS LEU ALA PRO PRO ILE PHE PRO SEQRES 16 D 302 PRO GLY PHE GLY GLU ALA ILE VAL TYR PHE MET SER ASP SEQRES 17 D 302 PHE PRO ILE VAL SER GLY ASN THR ALA GLN VAL PRO CYS SEQRES 18 D 302 THR LEU PRO GLN GLU PHE VAL SER HIS PHE VAL GLU GLN SEQRES 19 D 302 GLN ALA PRO VAL ARG GLY GLU ALA ALA LEU LEU HIS TYR SEQRES 20 D 302 VAL ASP PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS SEQRES 21 D 302 LEU TYR PRO ASP GLY PHE ILE THR CYS VAL PRO ASN THR SEQRES 22 D 302 GLY GLY GLY PRO GLN ASN LEU PRO THR ASN GLY VAL PHE SEQRES 23 D 302 VAL PHE SER SER TRP VAL SER ARG TYR TYR GLN LEU LYS SEQRES 24 D 302 PRO VAL GLY HET NAG E 1 15 HET GAL E 2 11 HET FUC E 3 10 HET FUC E 4 10 HET NAG F 1 15 HET GAL F 2 11 HET FUC F 3 10 HET FUC F 4 10 HET NAG G 1 15 HET GAL G 2 11 HET FUC G 3 10 HET FUC G 4 10 HET NAG H 1 15 HET GAL H 2 11 HET FUC H 3 10 HET FUC H 4 10 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 5 GAL 4(C6 H12 O6) FORMUL 5 FUC 8(C6 H12 O5) FORMUL 9 HOH *1178(H2 O) HELIX 1 AA1 PRO A 238 LEU A 242 5 5 HELIX 2 AA2 SER A 284 VAL A 288 5 5 HELIX 3 AA3 PRO A 448 GLN A 459 1 12 HELIX 4 AA4 GLY A 500 LEU A 504 5 5 HELIX 5 AA5 PRO B 238 LEU B 242 5 5 HELIX 6 AA6 SER B 284 VAL B 288 5 5 HELIX 7 AA7 PRO B 448 GLN B 459 1 12 HELIX 8 AA8 GLY B 500 LEU B 504 5 5 HELIX 9 AA9 PRO C 238 LEU C 242 5 5 HELIX 10 AB1 SER C 284 VAL C 288 5 5 HELIX 11 AB2 ALA C 361 LEU C 364 5 4 HELIX 12 AB3 PRO C 448 GLN C 459 1 12 HELIX 13 AB4 GLY C 500 LEU C 504 5 5 HELIX 14 AB5 ALA D 225 ARG D 230 5 6 HELIX 15 AB6 PRO D 238 LEU D 242 5 5 HELIX 16 AB7 SER D 284 VAL D 288 5 5 HELIX 17 AB8 ALA D 361 LEU D 364 5 4 HELIX 18 AB9 PRO D 448 GLN D 459 1 12 HELIX 19 AC1 GLY D 500 LEU D 504 5 5 SHEET 1 AA1 3 LYS A 253 THR A 255 0 SHEET 2 AA1 3 TYR A 428 ASP A 432 -1 O MET A 430 N LYS A 253 SHEET 3 AA1 3 GLN A 442 CYS A 445 -1 O CYS A 445 N PHE A 429 SHEET 1 AA2 6 MET A 349 VAL A 354 0 SHEET 2 AA2 6 ASP A 332 LYS A 339 -1 N VAL A 335 O LEU A 352 SHEET 3 AA2 6 ASP A 378 SER A 387 -1 O ALA A 384 N HIS A 334 SHEET 4 AA2 6 ARG A 290 SER A 297 -1 N GLY A 293 O GLN A 379 SHEET 5 AA2 6 LYS A 302 THR A 307 -1 O ASN A 305 N LYS A 294 SHEET 6 AA2 6 SER A 366 GLU A 368 -1 O ILE A 367 N LEU A 304 SHEET 1 AA3 5 ALA A 425 ILE A 426 0 SHEET 2 AA3 5 PHE A 490 CYS A 493 -1 O CYS A 493 N ALA A 425 SHEET 3 AA3 5 ASN A 479 TYR A 486 -1 N TYR A 486 O PHE A 490 SHEET 4 AA3 5 ALA A 466 VAL A 472 -1 N TYR A 471 O LEU A 480 SHEET 5 AA3 5 VAL A 509 VAL A 516 -1 O SER A 514 N LEU A 468 SHEET 1 AA4 3 LYS B 253 THR B 255 0 SHEET 2 AA4 3 TYR B 428 ASP B 432 -1 O TYR B 428 N THR B 255 SHEET 3 AA4 3 GLN B 442 CYS B 445 -1 O CYS B 445 N PHE B 429 SHEET 1 AA5 6 MET B 349 VAL B 354 0 SHEET 2 AA5 6 ASP B 332 LYS B 339 -1 N VAL B 335 O LEU B 352 SHEET 3 AA5 6 ASP B 378 SER B 387 -1 O SER B 387 N ASP B 332 SHEET 4 AA5 6 ARG B 290 SER B 297 -1 N GLY B 293 O GLN B 379 SHEET 5 AA5 6 LYS B 302 THR B 307 -1 O ASN B 305 N LYS B 294 SHEET 6 AA5 6 SER B 366 PHE B 369 -1 O ILE B 367 N LEU B 304 SHEET 1 AA6 5 ALA B 425 ILE B 426 0 SHEET 2 AA6 5 PHE B 490 CYS B 493 -1 O CYS B 493 N ALA B 425 SHEET 3 AA6 5 ASN B 479 TYR B 486 -1 N TYR B 486 O PHE B 490 SHEET 4 AA6 5 ALA B 466 VAL B 472 -1 N TYR B 471 O LEU B 480 SHEET 5 AA6 5 VAL B 509 VAL B 516 -1 O VAL B 516 N ALA B 466 SHEET 1 AA7 3 LYS C 253 THR C 255 0 SHEET 2 AA7 3 TYR C 428 SER C 431 -1 O MET C 430 N LYS C 253 SHEET 3 AA7 3 VAL C 443 CYS C 445 -1 O CYS C 445 N PHE C 429 SHEET 1 AA8 6 MET C 349 VAL C 354 0 SHEET 2 AA8 6 ASP C 332 LYS C 339 -1 N VAL C 335 O LEU C 352 SHEET 3 AA8 6 ASP C 378 SER C 387 -1 O ALA C 384 N HIS C 334 SHEET 4 AA8 6 ARG C 290 THR C 298 -1 N GLY C 293 O GLN C 379 SHEET 5 AA8 6 GLY C 301 THR C 307 -1 O GLY C 301 N THR C 298 SHEET 6 AA8 6 SER C 366 PHE C 369 -1 O ILE C 367 N LEU C 304 SHEET 1 AA9 5 ALA C 425 ILE C 426 0 SHEET 2 AA9 5 PHE C 490 CYS C 493 -1 O CYS C 493 N ALA C 425 SHEET 3 AA9 5 ASN C 479 TYR C 486 -1 N TYR C 486 O PHE C 490 SHEET 4 AA9 5 ALA C 466 VAL C 472 -1 N TYR C 471 O LEU C 480 SHEET 5 AA9 5 VAL C 509 VAL C 516 -1 O SER C 513 N LEU C 468 SHEET 1 AB1 3 LYS D 253 THR D 255 0 SHEET 2 AB1 3 TYR D 428 ASP D 432 -1 O MET D 430 N LYS D 253 SHEET 3 AB1 3 GLN D 442 CYS D 445 -1 O CYS D 445 N PHE D 429 SHEET 1 AB2 6 MET D 349 VAL D 354 0 SHEET 2 AB2 6 ASP D 332 LYS D 339 -1 N VAL D 335 O LEU D 352 SHEET 3 AB2 6 ASP D 378 SER D 387 -1 O ALA D 384 N HIS D 334 SHEET 4 AB2 6 ARG D 290 SER D 297 -1 N GLY D 293 O GLN D 379 SHEET 5 AB2 6 LYS D 302 THR D 307 -1 O ASN D 305 N LYS D 294 SHEET 6 AB2 6 SER D 366 GLU D 368 -1 O ILE D 367 N LEU D 304 SHEET 1 AB3 5 ALA D 425 ILE D 426 0 SHEET 2 AB3 5 PHE D 490 CYS D 493 -1 O CYS D 493 N ALA D 425 SHEET 3 AB3 5 ASN D 479 TYR D 486 -1 N TYR D 486 O PHE D 490 SHEET 4 AB3 5 ALA D 466 VAL D 472 -1 N ALA D 467 O LEU D 485 SHEET 5 AB3 5 VAL D 509 VAL D 516 -1 O VAL D 509 N VAL D 472 LINK O4 NAG E 1 C1 GAL E 2 1555 1555 1.44 LINK O3 NAG E 1 C1 FUC E 4 1555 1555 1.43 LINK O2 GAL E 2 C1 FUC E 3 1555 1555 1.44 LINK O4 NAG F 1 C1 GAL F 2 1555 1555 1.44 LINK O3 NAG F 1 C1 FUC F 4 1555 1555 1.44 LINK O2 GAL F 2 C1 FUC F 3 1555 1555 1.44 LINK O4 NAG G 1 C1 GAL G 2 1555 1555 1.43 LINK O3 NAG G 1 C1 FUC G 4 1555 1555 1.43 LINK O2 GAL G 2 C1 FUC G 3 1555 1555 1.44 LINK O4 NAG H 1 C1 GAL H 2 1555 1555 1.43 LINK O3 NAG H 1 C1 FUC H 4 1555 1555 1.44 LINK O2 GAL H 2 C1 FUC H 3 1555 1555 1.43 CRYST1 62.314 63.124 90.580 72.80 82.18 60.85 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016048 -0.008950 0.000175 0.00000 SCALE2 0.000000 0.018139 -0.004988 0.00000 SCALE3 0.000000 0.000000 0.011557 0.00000