HEADER VIRAL PROTEIN 01-MAR-14 4P26 TITLE STRUCTURE OF THE P DOMAIN FROM A GI.7 NOROVIRUS VARIANT IN COMPLEX TITLE 2 WITH A-TYPE 2 HBGA COMPND MOL_ID: 1; COMPND 2 MOLECULE: P DOMAIN OF VP1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS HU/GI.7/TCH-060/USA/2003; SOURCE 3 ORGANISM_TAXID: 1097017; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS P DOMAIN, CAPSID PROTEIN, NOROVIRUS, HBGA, A TYPE 2, TYPE 2 HBGA, KEYWDS 2 SECRETOR, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.SHANKER,R.CZAKO,B.SANKARAN,R.ATMAR,M.ESTES,B.V.V.PRASAD REVDAT 6 27-SEP-23 4P26 1 REMARK HETSYN REVDAT 5 05-AUG-20 4P26 1 LINK REVDAT 4 29-JUL-20 4P26 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE ATOM REVDAT 3 27-NOV-19 4P26 1 COMPND SOURCE JRNL REMARK REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 21-MAY-14 4P26 1 JRNL REVDAT 1 02-APR-14 4P26 0 JRNL AUTH S.SHANKER,R.CZAKO,B.SANKARAN,R.L.ATMAR,M.K.ESTES,B.V.PRASAD JRNL TITL STRUCTURAL ANALYSIS OF DETERMINANTS OF HISTO-BLOOD GROUP JRNL TITL 2 ANTIGEN BINDING SPECIFICITY IN GENOGROUP I NOROVIRUSES. JRNL REF J.VIROL. V. 88 6168 2014 JRNL REFN ESSN 1098-5514 JRNL PMID 24648450 JRNL DOI 10.1128/JVI.00201-14 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 87893 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0295 - 5.8939 0.98 2845 145 0.1770 0.1880 REMARK 3 2 5.8939 - 4.6820 0.98 2851 131 0.1435 0.1589 REMARK 3 3 4.6820 - 4.0913 0.98 2799 155 0.1222 0.1230 REMARK 3 4 4.0913 - 3.7178 0.98 2781 165 0.1369 0.1358 REMARK 3 5 3.7178 - 3.4516 0.98 2827 166 0.1448 0.1641 REMARK 3 6 3.4516 - 3.2482 0.98 2800 154 0.1437 0.1648 REMARK 3 7 3.2482 - 3.0857 0.98 2807 148 0.1497 0.1816 REMARK 3 8 3.0857 - 2.9514 0.97 2821 136 0.1659 0.2075 REMARK 3 9 2.9514 - 2.8379 0.98 2781 158 0.1667 0.2123 REMARK 3 10 2.8379 - 2.7400 0.97 2772 132 0.1655 0.2043 REMARK 3 11 2.7400 - 2.6543 0.97 2818 135 0.1733 0.2042 REMARK 3 12 2.6543 - 2.5785 0.97 2828 144 0.1689 0.2234 REMARK 3 13 2.5785 - 2.5106 0.97 2743 144 0.1735 0.2072 REMARK 3 14 2.5106 - 2.4494 0.97 2774 172 0.1732 0.2182 REMARK 3 15 2.4494 - 2.3937 0.97 2801 153 0.1693 0.2293 REMARK 3 16 2.3937 - 2.3428 0.97 2721 140 0.1693 0.2257 REMARK 3 17 2.3428 - 2.2960 0.97 2853 158 0.1678 0.1917 REMARK 3 18 2.2960 - 2.2526 0.97 2741 142 0.1698 0.1907 REMARK 3 19 2.2526 - 2.2124 0.96 2793 145 0.1629 0.2027 REMARK 3 20 2.2124 - 2.1749 0.97 2760 141 0.1630 0.2103 REMARK 3 21 2.1749 - 2.1398 0.96 2777 130 0.1610 0.2059 REMARK 3 22 2.1398 - 2.1069 0.96 2735 138 0.1683 0.1836 REMARK 3 23 2.1069 - 2.0759 0.96 2774 157 0.1714 0.2232 REMARK 3 24 2.0759 - 2.0467 0.96 2764 122 0.1751 0.2297 REMARK 3 25 2.0467 - 2.0190 0.96 2781 140 0.1772 0.2331 REMARK 3 26 2.0190 - 1.9928 0.96 2772 157 0.1764 0.2498 REMARK 3 27 1.9928 - 1.9679 0.96 2736 140 0.1786 0.2207 REMARK 3 28 1.9679 - 1.9442 0.96 2736 173 0.1823 0.2303 REMARK 3 29 1.9442 - 1.9216 0.95 2723 132 0.1868 0.2419 REMARK 3 30 1.9216 - 1.9000 0.95 2776 150 0.1931 0.2496 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.480 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 9151 REMARK 3 ANGLE : 1.315 12541 REMARK 3 CHIRALITY : 0.085 1419 REMARK 3 PLANARITY : 0.006 1645 REMARK 3 DIHEDRAL : 12.563 3326 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 27 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 252 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7362 27.3602 57.9715 REMARK 3 T TENSOR REMARK 3 T11: 0.1149 T22: 0.1044 REMARK 3 T33: 0.0792 T12: -0.0213 REMARK 3 T13: 0.0145 T23: 0.0234 REMARK 3 L TENSOR REMARK 3 L11: 2.6657 L22: 2.4650 REMARK 3 L33: 1.6320 L12: -0.0712 REMARK 3 L13: 0.3858 L23: -0.0789 REMARK 3 S TENSOR REMARK 3 S11: 0.0367 S12: 0.0809 S13: 0.1348 REMARK 3 S21: 0.0161 S22: -0.0674 S23: 0.1208 REMARK 3 S31: -0.2153 S32: -0.0197 S33: -0.0016 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 253 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.9224 18.1540 67.7657 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.1329 REMARK 3 T33: 0.0624 T12: -0.0169 REMARK 3 T13: -0.0198 T23: 0.0117 REMARK 3 L TENSOR REMARK 3 L11: 2.2660 L22: 1.0229 REMARK 3 L33: 1.2111 L12: -0.3468 REMARK 3 L13: -0.3838 L23: 0.0940 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: -0.3258 S13: 0.0216 REMARK 3 S21: 0.1553 S22: 0.0097 S23: -0.0849 REMARK 3 S31: 0.0332 S32: 0.1911 S33: -0.0046 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 332 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9905 9.9839 60.0590 REMARK 3 T TENSOR REMARK 3 T11: 0.0866 T22: 0.1121 REMARK 3 T33: 0.1168 T12: 0.0217 REMARK 3 T13: -0.0252 T23: 0.0241 REMARK 3 L TENSOR REMARK 3 L11: 1.9902 L22: 1.4936 REMARK 3 L33: 2.1541 L12: -0.0766 REMARK 3 L13: -0.2111 L23: 0.0902 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: -0.1774 S13: -0.1766 REMARK 3 S21: 0.0663 S22: -0.0241 S23: -0.1837 REMARK 3 S31: 0.1355 S32: 0.2365 S33: 0.0089 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 398 THROUGH 448 ) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1564 13.3712 65.7860 REMARK 3 T TENSOR REMARK 3 T11: 0.1158 T22: 0.1074 REMARK 3 T33: 0.0890 T12: -0.0122 REMARK 3 T13: -0.0006 T23: 0.0213 REMARK 3 L TENSOR REMARK 3 L11: 1.8273 L22: 1.3037 REMARK 3 L33: 0.6812 L12: -0.3327 REMARK 3 L13: -0.9845 L23: 0.2469 REMARK 3 S TENSOR REMARK 3 S11: -0.0552 S12: -0.1823 S13: -0.1422 REMARK 3 S21: 0.1506 S22: 0.0346 S23: 0.0219 REMARK 3 S31: 0.0556 S32: 0.1022 S33: 0.0335 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 449 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.8165 28.0573 63.3036 REMARK 3 T TENSOR REMARK 3 T11: 0.1276 T22: 0.0740 REMARK 3 T33: 0.1187 T12: 0.0119 REMARK 3 T13: 0.0271 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 3.2542 L22: 1.9427 REMARK 3 L33: 2.4215 L12: 0.4654 REMARK 3 L13: 0.0649 L23: 0.0062 REMARK 3 S TENSOR REMARK 3 S11: 0.0462 S12: -0.0642 S13: 0.3305 REMARK 3 S21: 0.0159 S22: -0.0617 S23: 0.1812 REMARK 3 S31: -0.1517 S32: -0.2498 S33: 0.0204 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 501 THROUGH 526 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.2174 25.3963 62.6548 REMARK 3 T TENSOR REMARK 3 T11: 0.1000 T22: 0.1378 REMARK 3 T33: 0.1388 T12: 0.0263 REMARK 3 T13: -0.0108 T23: 0.0170 REMARK 3 L TENSOR REMARK 3 L11: 2.6574 L22: 3.2894 REMARK 3 L33: 4.8027 L12: 0.2780 REMARK 3 L13: -1.4837 L23: 1.7453 REMARK 3 S TENSOR REMARK 3 S11: 0.0402 S12: -0.0542 S13: 0.0221 REMARK 3 S21: 0.1522 S22: -0.0597 S23: 0.2745 REMARK 3 S31: 0.0240 S32: -0.4160 S33: 0.0099 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 232 THROUGH 331 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5384 31.1785 44.9923 REMARK 3 T TENSOR REMARK 3 T11: 0.0714 T22: 0.0847 REMARK 3 T33: 0.0709 T12: -0.0128 REMARK 3 T13: 0.0104 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 0.7861 L22: 1.6882 REMARK 3 L33: 1.4633 L12: 0.5627 REMARK 3 L13: 0.2995 L23: 0.7802 REMARK 3 S TENSOR REMARK 3 S11: 0.0029 S12: 0.0322 S13: 0.0773 REMARK 3 S21: -0.0149 S22: -0.0064 S23: -0.0125 REMARK 3 S31: -0.0847 S32: 0.0404 S33: 0.0018 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 332 THROUGH 377 ) REMARK 3 ORIGIN FOR THE GROUP (A): 35.1017 15.0516 38.7819 REMARK 3 T TENSOR REMARK 3 T11: 0.0726 T22: 0.1023 REMARK 3 T33: 0.0949 T12: -0.0001 REMARK 3 T13: 0.0067 T23: -0.0333 REMARK 3 L TENSOR REMARK 3 L11: 1.6289 L22: 2.4905 REMARK 3 L33: 2.6012 L12: -0.6154 REMARK 3 L13: 0.2900 L23: -1.0999 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: 0.1301 S13: -0.2140 REMARK 3 S21: -0.1480 S22: -0.0311 S23: -0.0175 REMARK 3 S31: 0.2288 S32: 0.0513 S33: 0.0666 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 378 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.1745 33.8077 42.6574 REMARK 3 T TENSOR REMARK 3 T11: 0.0903 T22: 0.1307 REMARK 3 T33: 0.1079 T12: -0.0221 REMARK 3 T13: 0.0104 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 0.5565 L22: 2.1596 REMARK 3 L33: 0.9854 L12: 0.2469 REMARK 3 L13: -0.1604 L23: 0.2265 REMARK 3 S TENSOR REMARK 3 S11: -0.0015 S12: 0.0702 S13: 0.0773 REMARK 3 S21: -0.2213 S22: 0.0017 S23: -0.1530 REMARK 3 S31: -0.1513 S32: 0.1261 S33: -0.0037 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 432 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.2180 37.9142 52.3054 REMARK 3 T TENSOR REMARK 3 T11: 0.1414 T22: 0.0882 REMARK 3 T33: 0.0928 T12: -0.0490 REMARK 3 T13: 0.0019 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 0.6775 L22: 3.2611 REMARK 3 L33: 1.7067 L12: 0.0763 REMARK 3 L13: 0.1650 L23: 0.2366 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.1337 S13: 0.3311 REMARK 3 S21: 0.1595 S22: 0.0172 S23: 0.0293 REMARK 3 S31: -0.1081 S32: -0.0240 S33: 0.0160 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 466 THROUGH 508 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.0859 47.3711 61.0227 REMARK 3 T TENSOR REMARK 3 T11: 0.1516 T22: 0.1024 REMARK 3 T33: 0.1672 T12: -0.0365 REMARK 3 T13: -0.0014 T23: -0.0160 REMARK 3 L TENSOR REMARK 3 L11: 0.9342 L22: 1.0806 REMARK 3 L33: 0.7097 L12: 0.1277 REMARK 3 L13: -0.2355 L23: -0.1361 REMARK 3 S TENSOR REMARK 3 S11: -0.0013 S12: -0.0969 S13: 0.1556 REMARK 3 S21: 0.1438 S22: -0.0042 S23: -0.0422 REMARK 3 S31: -0.0627 S32: 0.0385 S33: 0.0079 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 509 THROUGH 526 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.8147 54.0460 58.5576 REMARK 3 T TENSOR REMARK 3 T11: 0.2000 T22: 0.1295 REMARK 3 T33: 0.2023 T12: -0.0182 REMARK 3 T13: 0.0195 T23: -0.0273 REMARK 3 L TENSOR REMARK 3 L11: 4.5788 L22: 2.0145 REMARK 3 L33: 0.7949 L12: -0.3407 REMARK 3 L13: 0.7871 L23: 0.3405 REMARK 3 S TENSOR REMARK 3 S11: -0.0150 S12: 0.0375 S13: 0.6725 REMARK 3 S21: -0.0389 S22: -0.0503 S23: -0.0012 REMARK 3 S31: -0.2198 S32: 0.0377 S33: 0.0593 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 231 THROUGH 317 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.0701 54.4287 101.4670 REMARK 3 T TENSOR REMARK 3 T11: 0.0856 T22: 0.0720 REMARK 3 T33: 0.0816 T12: 0.0150 REMARK 3 T13: 0.0012 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.7628 L22: 0.8774 REMARK 3 L33: 2.0892 L12: -0.0762 REMARK 3 L13: 0.1538 L23: -0.4396 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: -0.0044 S13: 0.0503 REMARK 3 S21: -0.0890 S22: -0.0105 S23: -0.0140 REMARK 3 S31: 0.0262 S32: -0.0126 S33: 0.0118 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 318 THROUGH 387 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6931 51.2849 114.6612 REMARK 3 T TENSOR REMARK 3 T11: 0.0747 T22: 0.1209 REMARK 3 T33: 0.0697 T12: 0.0105 REMARK 3 T13: -0.0065 T23: -0.0229 REMARK 3 L TENSOR REMARK 3 L11: 1.7912 L22: 1.9496 REMARK 3 L33: 2.0049 L12: 0.5215 REMARK 3 L13: -0.4608 L23: -0.6335 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: -0.2156 S13: 0.0749 REMARK 3 S21: 0.1117 S22: -0.0318 S23: 0.0848 REMARK 3 S31: -0.0790 S32: -0.0181 S33: 0.0140 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 388 THROUGH 407 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4322 62.7329 107.2340 REMARK 3 T TENSOR REMARK 3 T11: 0.1855 T22: 0.1964 REMARK 3 T33: 0.1591 T12: 0.0697 REMARK 3 T13: 0.0156 T23: 0.0098 REMARK 3 L TENSOR REMARK 3 L11: 3.3475 L22: 1.8783 REMARK 3 L33: 2.3951 L12: -0.2885 REMARK 3 L13: -1.1806 L23: -0.6142 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.1123 S13: 0.4525 REMARK 3 S21: 0.3382 S22: 0.1243 S23: 0.4426 REMARK 3 S31: -0.4395 S32: -0.5642 S33: 0.0225 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 408 THROUGH 465 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.6971 59.2182 93.5255 REMARK 3 T TENSOR REMARK 3 T11: 0.1173 T22: 0.0887 REMARK 3 T33: 0.0762 T12: 0.0055 REMARK 3 T13: -0.0080 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.0181 L22: 1.3667 REMARK 3 L33: 1.9876 L12: -0.2085 REMARK 3 L13: -0.2738 L23: -0.7601 REMARK 3 S TENSOR REMARK 3 S11: 0.0308 S12: 0.0119 S13: 0.0988 REMARK 3 S21: -0.0084 S22: -0.0391 S23: -0.0608 REMARK 3 S31: -0.1104 S32: 0.0629 S33: 0.0026 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 466 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.7621 56.9738 78.7570 REMARK 3 T TENSOR REMARK 3 T11: 0.1410 T22: 0.1309 REMARK 3 T33: 0.1055 T12: 0.0192 REMARK 3 T13: -0.0119 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 1.5272 L22: 2.5588 REMARK 3 L33: 2.1553 L12: 0.4508 REMARK 3 L13: -0.4118 L23: 0.0564 REMARK 3 S TENSOR REMARK 3 S11: -0.0510 S12: 0.2025 S13: 0.0376 REMARK 3 S21: -0.2136 S22: -0.0109 S23: 0.1658 REMARK 3 S31: -0.0021 S32: -0.2252 S33: 0.0649 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 501 THROUGH 526 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.7590 59.0201 78.0353 REMARK 3 T TENSOR REMARK 3 T11: 0.2018 T22: 0.1267 REMARK 3 T33: 0.0834 T12: 0.0434 REMARK 3 T13: -0.0160 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.4122 L22: 1.9649 REMARK 3 L33: 1.7490 L12: 0.7175 REMARK 3 L13: -0.4665 L23: -1.0840 REMARK 3 S TENSOR REMARK 3 S11: 0.0332 S12: 0.1539 S13: 0.1804 REMARK 3 S21: -0.2101 S22: -0.0386 S23: 0.1208 REMARK 3 S31: 0.0430 S32: -0.0665 S33: -0.0136 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 231 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.2860 33.6086 97.8237 REMARK 3 T TENSOR REMARK 3 T11: 0.0860 T22: 0.0858 REMARK 3 T33: 0.0811 T12: 0.0127 REMARK 3 T13: -0.0027 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.4150 L22: 1.9053 REMARK 3 L33: 1.1918 L12: 0.3351 REMARK 3 L13: 0.0328 L23: 0.3535 REMARK 3 S TENSOR REMARK 3 S11: 0.0101 S12: -0.0841 S13: -0.0925 REMARK 3 S21: -0.0095 S22: 0.0178 S23: -0.1162 REMARK 3 S31: 0.0318 S32: 0.0677 S33: 0.0076 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 290 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.4290 31.4495 94.2955 REMARK 3 T TENSOR REMARK 3 T11: 0.1172 T22: 0.1303 REMARK 3 T33: 0.1550 T12: 0.0089 REMARK 3 T13: -0.0565 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 3.5229 L22: 2.9245 REMARK 3 L33: 3.4215 L12: 0.4876 REMARK 3 L13: -0.2064 L23: 0.1331 REMARK 3 S TENSOR REMARK 3 S11: 0.0298 S12: 0.2631 S13: -0.1944 REMARK 3 S21: -0.1941 S22: 0.0863 S23: 0.3258 REMARK 3 S31: 0.1162 S32: -0.2087 S33: -0.0859 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 320 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1563 31.2125 101.7771 REMARK 3 T TENSOR REMARK 3 T11: 0.0813 T22: 0.0845 REMARK 3 T33: 0.0921 T12: -0.0197 REMARK 3 T13: -0.0230 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 3.1569 L22: 2.4144 REMARK 3 L33: 2.6343 L12: -0.8285 REMARK 3 L13: -1.1456 L23: 0.5634 REMARK 3 S TENSOR REMARK 3 S11: -0.0671 S12: -0.0824 S13: -0.0479 REMARK 3 S21: -0.0619 S22: -0.0333 S23: 0.0499 REMARK 3 S31: 0.0237 S32: 0.0087 S33: 0.0795 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 340 THROUGH 354 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.3939 41.3593 105.2833 REMARK 3 T TENSOR REMARK 3 T11: 0.1167 T22: 0.1989 REMARK 3 T33: 0.2748 T12: 0.0538 REMARK 3 T13: -0.0391 T23: -0.0304 REMARK 3 L TENSOR REMARK 3 L11: 2.2989 L22: 2.1223 REMARK 3 L33: 2.9594 L12: 0.5884 REMARK 3 L13: -1.2100 L23: 1.8473 REMARK 3 S TENSOR REMARK 3 S11: 0.2295 S12: 0.1990 S13: 0.3985 REMARK 3 S21: -0.2154 S22: -0.4358 S23: 0.6904 REMARK 3 S31: -0.4339 S32: -0.3264 S33: -0.1303 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 355 THROUGH 397 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.4398 27.8346 105.6645 REMARK 3 T TENSOR REMARK 3 T11: 0.0898 T22: 0.1294 REMARK 3 T33: 0.0980 T12: -0.0096 REMARK 3 T13: 0.0030 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.3767 L22: 2.4206 REMARK 3 L33: 1.5533 L12: -0.4354 REMARK 3 L13: -0.2607 L23: -0.2603 REMARK 3 S TENSOR REMARK 3 S11: -0.0415 S12: -0.0984 S13: -0.1834 REMARK 3 S21: 0.0765 S22: -0.0570 S23: 0.0895 REMARK 3 S31: 0.1171 S32: -0.1208 S33: 0.0848 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 398 THROUGH 431 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.4170 23.4935 99.2221 REMARK 3 T TENSOR REMARK 3 T11: 0.1617 T22: 0.1218 REMARK 3 T33: 0.1669 T12: 0.0246 REMARK 3 T13: -0.0018 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 3.0400 L22: 1.1677 REMARK 3 L33: 1.6685 L12: -0.6717 REMARK 3 L13: -0.0499 L23: 0.1762 REMARK 3 S TENSOR REMARK 3 S11: 0.1578 S12: 0.0877 S13: -0.5199 REMARK 3 S21: -0.0194 S22: -0.0326 S23: -0.1678 REMARK 3 S31: 0.2370 S32: -0.0618 S33: -0.1172 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 432 THROUGH 458 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.3948 35.9432 99.3600 REMARK 3 T TENSOR REMARK 3 T11: 0.0713 T22: 0.0858 REMARK 3 T33: 0.0941 T12: 0.0088 REMARK 3 T13: -0.0220 T23: -0.0223 REMARK 3 L TENSOR REMARK 3 L11: 2.8126 L22: 1.3994 REMARK 3 L33: 3.4059 L12: 0.0881 REMARK 3 L13: -0.6443 L23: 0.0403 REMARK 3 S TENSOR REMARK 3 S11: 0.0373 S12: -0.1724 S13: -0.0174 REMARK 3 S21: 0.0337 S22: -0.0673 S23: -0.0734 REMARK 3 S31: -0.1898 S32: 0.3383 S33: 0.0418 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 459 THROUGH 500 ) REMARK 3 ORIGIN FOR THE GROUP (A): 52.1717 34.5436 96.2577 REMARK 3 T TENSOR REMARK 3 T11: 0.1126 T22: 0.1262 REMARK 3 T33: 0.1222 T12: 0.0165 REMARK 3 T13: 0.0414 T23: -0.0129 REMARK 3 L TENSOR REMARK 3 L11: 3.0386 L22: 3.0555 REMARK 3 L33: 3.6980 L12: 0.1452 REMARK 3 L13: 0.2554 L23: 0.4497 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: 0.0486 S13: 0.0329 REMARK 3 S21: -0.0578 S22: 0.0426 S23: -0.1942 REMARK 3 S31: -0.0069 S32: 0.2837 S33: -0.0563 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: CHAIN 'D' AND (RESID 501 THROUGH 526 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.1925 33.4811 98.1641 REMARK 3 T TENSOR REMARK 3 T11: 0.1025 T22: 0.1362 REMARK 3 T33: 0.1708 T12: 0.0155 REMARK 3 T13: 0.0142 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.8765 L22: 2.4906 REMARK 3 L33: 2.4388 L12: -0.4763 REMARK 3 L13: 0.0230 L23: 0.3654 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: -0.1101 S13: -0.0512 REMARK 3 S21: -0.1345 S22: 0.0502 S23: -0.2937 REMARK 3 S31: 0.0903 S32: 0.2813 S33: -0.1021 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P26 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200543. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.97935 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87902 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 34.024 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 4P12 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM FORMATE 0.1M BIS TRIS REMARK 280 PROPANE 20% PEG3350, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5250 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 226 REMARK 465 GLN A 227 REMARK 465 LYS A 228 REMARK 465 THR A 229 REMARK 465 ASP A 341 REMARK 465 GLN A 342 REMARK 465 THR A 406 REMARK 465 VAL A 407 REMARK 465 THR A 408 REMARK 465 GLU B 226 REMARK 465 GLN B 227 REMARK 465 LYS B 228 REMARK 465 THR B 229 REMARK 465 ARG B 230 REMARK 465 GLN B 231 REMARK 465 GLN B 342 REMARK 465 THR B 406 REMARK 465 VAL B 407 REMARK 465 THR B 408 REMARK 465 GLU B 409 REMARK 465 SER B 410 REMARK 465 THR B 411 REMARK 465 ASN B 439 REMARK 465 THR B 440 REMARK 465 ALA B 441 REMARK 465 GLU C 226 REMARK 465 GLN C 227 REMARK 465 LYS C 228 REMARK 465 THR C 229 REMARK 465 ARG C 230 REMARK 465 ASP C 341 REMARK 465 GLN C 342 REMARK 465 ASN C 343 REMARK 465 LEU C 344 REMARK 465 GLY C 438 REMARK 465 ASN C 439 REMARK 465 THR C 440 REMARK 465 GLU D 226 REMARK 465 GLN D 227 REMARK 465 LYS D 228 REMARK 465 THR D 229 REMARK 465 ARG D 230 REMARK 465 PHE D 317 REMARK 465 GLU D 318 REMARK 465 THR D 406 REMARK 465 VAL D 407 REMARK 465 THR D 408 REMARK 465 GLU D 409 REMARK 465 SER D 410 REMARK 465 THR D 411 REMARK 465 GLY D 438 REMARK 465 ASN D 439 REMARK 465 THR D 440 REMARK 465 ALA D 441 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASN A 343 CG OD1 ND2 REMARK 470 PHE B 422 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG B 518 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 231 CG CD OE1 NE2 REMARK 470 VAL C 407 CG1 CG2 REMARK 470 GLN D 231 CG CD OE1 NE2 REMARK 470 ASP D 341 CG OD1 OD2 REMARK 470 ARG D 478 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N SER A 405 OE1 GLU A 409 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 463 O6 NAG E 1 1565 1.92 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 265 43.37 -143.03 REMARK 500 PHE A 317 -94.75 -138.82 REMARK 500 GLN A 356 58.07 -93.00 REMARK 500 ASN A 357 -153.43 -106.73 REMARK 500 ALA A 441 58.40 -94.97 REMARK 500 GLN B 265 45.51 -141.95 REMARK 500 PHE B 317 -115.23 -140.87 REMARK 500 ASN B 357 -158.90 -109.51 REMARK 500 GLN C 265 43.31 -141.54 REMARK 500 ALA C 358 -36.75 -34.00 REMARK 500 GLN C 373 -169.97 -100.81 REMARK 500 GLN D 265 45.96 -143.11 REMARK 500 ASP D 341 45.12 -105.87 REMARK 500 GLN D 356 55.14 -92.29 REMARK 500 ASN D 357 -150.25 -106.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG B 351 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 916 DISTANCE = 7.17 ANGSTROMS REMARK 525 HOH B 928 DISTANCE = 6.62 ANGSTROMS REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG E 1 REMARK 615 NAG F 1 REMARK 615 NAG G 1 DBREF 4P26 A 226 526 UNP G8FL04 G8FL04_9CALI 226 526 DBREF 4P26 B 226 526 UNP G8FL04 G8FL04_9CALI 226 526 DBREF 4P26 C 226 526 UNP G8FL04 G8FL04_9CALI 226 526 DBREF 4P26 D 226 526 UNP G8FL04 G8FL04_9CALI 226 526 SEQRES 1 A 301 GLU GLN LYS THR ARG GLN LEU THR VAL PRO ASN ILE PRO SEQRES 2 A 301 LEU ASN ASN LEU ALA ASN SER ARG VAL PRO ALA MET ILE SEQRES 3 A 301 ASN LYS MET THR VAL SER THR ASP GLN ASN GLN VAL VAL SEQRES 4 A 301 GLN PHE GLN ASN GLY ARG CYS THR LEU GLU GLY GLN LEU SEQRES 5 A 301 LEU GLY THR THR PRO VAL SER ALA SER GLN VAL ALA ARG SEQRES 6 A 301 ILE ARG GLY LYS VAL PHE SER THR ALA SER GLY LYS GLY SEQRES 7 A 301 LEU ASN LEU THR GLU LEU ASP GLY THR PRO TYR HIS ALA SEQRES 8 A 301 PHE GLU SER PRO ALA PRO LEU GLY PHE PRO ASP ILE GLY SEQRES 9 A 301 ALA CYS ASP TRP HIS VAL SER THR PHE LYS VAL ASP GLN SEQRES 10 A 301 ASN LEU SER GLY ASP PRO MET SER ARG LEU ASP VAL LYS SEQRES 11 A 301 GLN ASN ALA PRO PHE ALA PRO HIS LEU GLY SER ILE GLU SEQRES 12 A 301 PHE THR SER ASP GLN ASP PRO THR GLY ASP GLN LEU GLY SEQRES 13 A 301 THR LEU ALA TRP VAL SER PRO SER THR SER GLY ALA ARG SEQRES 14 A 301 VAL ASP PRO TRP LYS ILE PRO SER TYR GLY SER THR VAL SEQRES 15 A 301 THR GLU SER THR HIS LEU ALA PRO PRO ILE PHE PRO PRO SEQRES 16 A 301 GLY PHE GLY GLU ALA ILE VAL TYR PHE MET SER ASP PHE SEQRES 17 A 301 PRO ILE VAL SER GLY ASN THR ALA GLN VAL PRO CYS THR SEQRES 18 A 301 LEU PRO GLN GLU PHE VAL SER HIS PHE VAL GLU GLN GLN SEQRES 19 A 301 ALA PRO VAL ARG GLY GLU ALA ALA LEU LEU HIS TYR VAL SEQRES 20 A 301 ASP PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS LEU SEQRES 21 A 301 TYR PRO ASP GLY PHE ILE THR CYS VAL PRO ASN THR GLY SEQRES 22 A 301 GLY GLY PRO GLN ASN LEU PRO THR ASN GLY VAL PHE VAL SEQRES 23 A 301 PHE SER SER TRP VAL SER ARG TYR TYR GLN LEU LYS PRO SEQRES 24 A 301 VAL GLY SEQRES 1 B 301 GLU GLN LYS THR ARG GLN LEU THR VAL PRO ASN ILE PRO SEQRES 2 B 301 LEU ASN ASN LEU ALA ASN SER ARG VAL PRO ALA MET ILE SEQRES 3 B 301 ASN LYS MET THR VAL SER THR ASP GLN ASN GLN VAL VAL SEQRES 4 B 301 GLN PHE GLN ASN GLY ARG CYS THR LEU GLU GLY GLN LEU SEQRES 5 B 301 LEU GLY THR THR PRO VAL SER ALA SER GLN VAL ALA ARG SEQRES 6 B 301 ILE ARG GLY LYS VAL PHE SER THR ALA SER GLY LYS GLY SEQRES 7 B 301 LEU ASN LEU THR GLU LEU ASP GLY THR PRO TYR HIS ALA SEQRES 8 B 301 PHE GLU SER PRO ALA PRO LEU GLY PHE PRO ASP ILE GLY SEQRES 9 B 301 ALA CYS ASP TRP HIS VAL SER THR PHE LYS VAL ASP GLN SEQRES 10 B 301 ASN LEU SER GLY ASP PRO MET SER ARG LEU ASP VAL LYS SEQRES 11 B 301 GLN ASN ALA PRO PHE ALA PRO HIS LEU GLY SER ILE GLU SEQRES 12 B 301 PHE THR SER ASP GLN ASP PRO THR GLY ASP GLN LEU GLY SEQRES 13 B 301 THR LEU ALA TRP VAL SER PRO SER THR SER GLY ALA ARG SEQRES 14 B 301 VAL ASP PRO TRP LYS ILE PRO SER TYR GLY SER THR VAL SEQRES 15 B 301 THR GLU SER THR HIS LEU ALA PRO PRO ILE PHE PRO PRO SEQRES 16 B 301 GLY PHE GLY GLU ALA ILE VAL TYR PHE MET SER ASP PHE SEQRES 17 B 301 PRO ILE VAL SER GLY ASN THR ALA GLN VAL PRO CYS THR SEQRES 18 B 301 LEU PRO GLN GLU PHE VAL SER HIS PHE VAL GLU GLN GLN SEQRES 19 B 301 ALA PRO VAL ARG GLY GLU ALA ALA LEU LEU HIS TYR VAL SEQRES 20 B 301 ASP PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS LEU SEQRES 21 B 301 TYR PRO ASP GLY PHE ILE THR CYS VAL PRO ASN THR GLY SEQRES 22 B 301 GLY GLY PRO GLN ASN LEU PRO THR ASN GLY VAL PHE VAL SEQRES 23 B 301 PHE SER SER TRP VAL SER ARG TYR TYR GLN LEU LYS PRO SEQRES 24 B 301 VAL GLY SEQRES 1 C 301 GLU GLN LYS THR ARG GLN LEU THR VAL PRO ASN ILE PRO SEQRES 2 C 301 LEU ASN ASN LEU ALA ASN SER ARG VAL PRO ALA MET ILE SEQRES 3 C 301 ASN LYS MET THR VAL SER THR ASP GLN ASN GLN VAL VAL SEQRES 4 C 301 GLN PHE GLN ASN GLY ARG CYS THR LEU GLU GLY GLN LEU SEQRES 5 C 301 LEU GLY THR THR PRO VAL SER ALA SER GLN VAL ALA ARG SEQRES 6 C 301 ILE ARG GLY LYS VAL PHE SER THR ALA SER GLY LYS GLY SEQRES 7 C 301 LEU ASN LEU THR GLU LEU ASP GLY THR PRO TYR HIS ALA SEQRES 8 C 301 PHE GLU SER PRO ALA PRO LEU GLY PHE PRO ASP ILE GLY SEQRES 9 C 301 ALA CYS ASP TRP HIS VAL SER THR PHE LYS VAL ASP GLN SEQRES 10 C 301 ASN LEU SER GLY ASP PRO MET SER ARG LEU ASP VAL LYS SEQRES 11 C 301 GLN ASN ALA PRO PHE ALA PRO HIS LEU GLY SER ILE GLU SEQRES 12 C 301 PHE THR SER ASP GLN ASP PRO THR GLY ASP GLN LEU GLY SEQRES 13 C 301 THR LEU ALA TRP VAL SER PRO SER THR SER GLY ALA ARG SEQRES 14 C 301 VAL ASP PRO TRP LYS ILE PRO SER TYR GLY SER THR VAL SEQRES 15 C 301 THR GLU SER THR HIS LEU ALA PRO PRO ILE PHE PRO PRO SEQRES 16 C 301 GLY PHE GLY GLU ALA ILE VAL TYR PHE MET SER ASP PHE SEQRES 17 C 301 PRO ILE VAL SER GLY ASN THR ALA GLN VAL PRO CYS THR SEQRES 18 C 301 LEU PRO GLN GLU PHE VAL SER HIS PHE VAL GLU GLN GLN SEQRES 19 C 301 ALA PRO VAL ARG GLY GLU ALA ALA LEU LEU HIS TYR VAL SEQRES 20 C 301 ASP PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS LEU SEQRES 21 C 301 TYR PRO ASP GLY PHE ILE THR CYS VAL PRO ASN THR GLY SEQRES 22 C 301 GLY GLY PRO GLN ASN LEU PRO THR ASN GLY VAL PHE VAL SEQRES 23 C 301 PHE SER SER TRP VAL SER ARG TYR TYR GLN LEU LYS PRO SEQRES 24 C 301 VAL GLY SEQRES 1 D 301 GLU GLN LYS THR ARG GLN LEU THR VAL PRO ASN ILE PRO SEQRES 2 D 301 LEU ASN ASN LEU ALA ASN SER ARG VAL PRO ALA MET ILE SEQRES 3 D 301 ASN LYS MET THR VAL SER THR ASP GLN ASN GLN VAL VAL SEQRES 4 D 301 GLN PHE GLN ASN GLY ARG CYS THR LEU GLU GLY GLN LEU SEQRES 5 D 301 LEU GLY THR THR PRO VAL SER ALA SER GLN VAL ALA ARG SEQRES 6 D 301 ILE ARG GLY LYS VAL PHE SER THR ALA SER GLY LYS GLY SEQRES 7 D 301 LEU ASN LEU THR GLU LEU ASP GLY THR PRO TYR HIS ALA SEQRES 8 D 301 PHE GLU SER PRO ALA PRO LEU GLY PHE PRO ASP ILE GLY SEQRES 9 D 301 ALA CYS ASP TRP HIS VAL SER THR PHE LYS VAL ASP GLN SEQRES 10 D 301 ASN LEU SER GLY ASP PRO MET SER ARG LEU ASP VAL LYS SEQRES 11 D 301 GLN ASN ALA PRO PHE ALA PRO HIS LEU GLY SER ILE GLU SEQRES 12 D 301 PHE THR SER ASP GLN ASP PRO THR GLY ASP GLN LEU GLY SEQRES 13 D 301 THR LEU ALA TRP VAL SER PRO SER THR SER GLY ALA ARG SEQRES 14 D 301 VAL ASP PRO TRP LYS ILE PRO SER TYR GLY SER THR VAL SEQRES 15 D 301 THR GLU SER THR HIS LEU ALA PRO PRO ILE PHE PRO PRO SEQRES 16 D 301 GLY PHE GLY GLU ALA ILE VAL TYR PHE MET SER ASP PHE SEQRES 17 D 301 PRO ILE VAL SER GLY ASN THR ALA GLN VAL PRO CYS THR SEQRES 18 D 301 LEU PRO GLN GLU PHE VAL SER HIS PHE VAL GLU GLN GLN SEQRES 19 D 301 ALA PRO VAL ARG GLY GLU ALA ALA LEU LEU HIS TYR VAL SEQRES 20 D 301 ASP PRO ASP THR HIS ARG ASN LEU GLY GLU PHE LYS LEU SEQRES 21 D 301 TYR PRO ASP GLY PHE ILE THR CYS VAL PRO ASN THR GLY SEQRES 22 D 301 GLY GLY PRO GLN ASN LEU PRO THR ASN GLY VAL PHE VAL SEQRES 23 D 301 PHE SER SER TRP VAL SER ARG TYR TYR GLN LEU LYS PRO SEQRES 24 D 301 VAL GLY HET NAG E 1 15 HET GAL E 2 11 HET FUC E 3 10 HET A2G E 4 14 HET NAG F 1 15 HET GAL F 2 11 HET FUC F 3 10 HET A2G F 4 14 HET NAG G 1 15 HET GAL G 2 11 HET FUC G 3 10 HET A2G G 4 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM A2G 2-ACETAMIDO-2-DEOXY-ALPHA-D-GALACTOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE HETSYN A2G N-ACETYL-ALPHA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 A2G ALPHA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 A2G ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-2-DEOXY-2-AMINO- HETSYN 4 A2G GALACTOSE FORMUL 5 NAG 3(C8 H15 N O6) FORMUL 5 GAL 3(C6 H12 O6) FORMUL 5 FUC 3(C6 H12 O5) FORMUL 5 A2G 3(C8 H15 N O6) FORMUL 8 HOH *973(H2 O) HELIX 1 AA1 PRO A 238 LEU A 242 5 5 HELIX 2 AA2 SER A 284 VAL A 288 5 5 HELIX 3 AA3 PRO A 448 GLN A 459 1 12 HELIX 4 AA4 GLY A 500 LEU A 504 5 5 HELIX 5 AA5 PRO B 238 LEU B 242 5 5 HELIX 6 AA6 SER B 284 VAL B 288 5 5 HELIX 7 AA7 PRO B 448 GLN B 459 1 12 HELIX 8 AA8 GLY B 500 LEU B 504 5 5 HELIX 9 AA9 PRO C 238 LEU C 242 5 5 HELIX 10 AB1 SER C 284 VAL C 288 5 5 HELIX 11 AB2 ALA C 361 LEU C 364 5 4 HELIX 12 AB3 PRO C 448 GLN C 459 1 12 HELIX 13 AB4 GLY C 500 LEU C 504 5 5 HELIX 14 AB5 PRO D 238 LEU D 242 5 5 HELIX 15 AB6 SER D 284 VAL D 288 5 5 HELIX 16 AB7 ALA D 361 LEU D 364 5 4 HELIX 17 AB8 PRO D 448 GLN D 459 1 12 HELIX 18 AB9 GLY D 500 LEU D 504 5 5 SHEET 1 AA1 3 LYS A 253 THR A 255 0 SHEET 2 AA1 3 TYR A 428 ASP A 432 -1 O TYR A 428 N THR A 255 SHEET 3 AA1 3 GLN A 442 CYS A 445 -1 O CYS A 445 N PHE A 429 SHEET 1 AA2 6 MET A 349 VAL A 354 0 SHEET 2 AA2 6 ASP A 332 LYS A 339 -1 N VAL A 335 O LEU A 352 SHEET 3 AA2 6 ASP A 378 SER A 387 -1 O SER A 387 N ASP A 332 SHEET 4 AA2 6 ARG A 290 SER A 297 -1 N ILE A 291 O GLY A 381 SHEET 5 AA2 6 LYS A 302 THR A 307 -1 O GLY A 303 N PHE A 296 SHEET 6 AA2 6 SER A 366 PHE A 369 -1 O ILE A 367 N LEU A 304 SHEET 1 AA3 5 ALA A 425 ILE A 426 0 SHEET 2 AA3 5 PHE A 490 CYS A 493 -1 O CYS A 493 N ALA A 425 SHEET 3 AA3 5 ASN A 479 TYR A 486 -1 N LYS A 484 O THR A 492 SHEET 4 AA3 5 ALA A 466 VAL A 472 -1 N LEU A 469 O PHE A 483 SHEET 5 AA3 5 VAL A 509 VAL A 516 -1 O VAL A 509 N VAL A 472 SHEET 1 AA4 3 LYS B 253 THR B 255 0 SHEET 2 AA4 3 TYR B 428 SER B 431 -1 O MET B 430 N LYS B 253 SHEET 3 AA4 3 VAL B 443 CYS B 445 -1 O CYS B 445 N PHE B 429 SHEET 1 AA5 6 MET B 349 VAL B 354 0 SHEET 2 AA5 6 ASP B 332 LYS B 339 -1 N VAL B 335 O LEU B 352 SHEET 3 AA5 6 ASP B 378 SER B 387 -1 O ALA B 384 N HIS B 334 SHEET 4 AA5 6 ARG B 290 SER B 297 -1 N ILE B 291 O GLY B 381 SHEET 5 AA5 6 LYS B 302 THR B 307 -1 O ASN B 305 N LYS B 294 SHEET 6 AA5 6 SER B 366 PHE B 369 -1 O ILE B 367 N LEU B 304 SHEET 1 AA6 5 ALA B 425 ILE B 426 0 SHEET 2 AA6 5 PHE B 490 CYS B 493 -1 O CYS B 493 N ALA B 425 SHEET 3 AA6 5 ASN B 479 TYR B 486 -1 N TYR B 486 O PHE B 490 SHEET 4 AA6 5 ALA B 466 VAL B 472 -1 N LEU B 469 O PHE B 483 SHEET 5 AA6 5 VAL B 509 VAL B 516 -1 O SER B 514 N LEU B 468 SHEET 1 AA7 3 LYS C 253 THR C 255 0 SHEET 2 AA7 3 TYR C 428 SER C 431 -1 O TYR C 428 N THR C 255 SHEET 3 AA7 3 VAL C 443 CYS C 445 -1 O CYS C 445 N PHE C 429 SHEET 1 AA8 6 SER C 350 VAL C 354 0 SHEET 2 AA8 6 ASP C 332 LYS C 339 -1 N VAL C 335 O LEU C 352 SHEET 3 AA8 6 ASP C 378 SER C 387 -1 O ALA C 384 N HIS C 334 SHEET 4 AA8 6 ARG C 290 SER C 297 -1 N GLY C 293 O GLN C 379 SHEET 5 AA8 6 LYS C 302 LEU C 306 -1 O ASN C 305 N LYS C 294 SHEET 6 AA8 6 SER C 366 PHE C 369 -1 O ILE C 367 N LEU C 304 SHEET 1 AA9 5 ALA C 425 ILE C 426 0 SHEET 2 AA9 5 PHE C 490 CYS C 493 -1 O CYS C 493 N ALA C 425 SHEET 3 AA9 5 ASN C 479 TYR C 486 -1 N TYR C 486 O PHE C 490 SHEET 4 AA9 5 ALA C 466 VAL C 472 -1 N TYR C 471 O LEU C 480 SHEET 5 AA9 5 VAL C 509 VAL C 516 -1 O VAL C 509 N VAL C 472 SHEET 1 AB1 3 LYS D 253 THR D 255 0 SHEET 2 AB1 3 TYR D 428 SER D 431 -1 O MET D 430 N LYS D 253 SHEET 3 AB1 3 VAL D 443 CYS D 445 -1 O CYS D 445 N PHE D 429 SHEET 1 AB2 6 SER D 350 VAL D 354 0 SHEET 2 AB2 6 ASP D 332 LYS D 339 -1 N VAL D 335 O LEU D 352 SHEET 3 AB2 6 ASP D 378 SER D 387 -1 O ALA D 384 N HIS D 334 SHEET 4 AB2 6 ARG D 290 SER D 297 -1 N GLY D 293 O GLN D 379 SHEET 5 AB2 6 LYS D 302 THR D 307 -1 O GLY D 303 N PHE D 296 SHEET 6 AB2 6 SER D 366 GLU D 368 -1 O ILE D 367 N LEU D 304 SHEET 1 AB3 5 ALA D 425 ILE D 426 0 SHEET 2 AB3 5 PHE D 490 CYS D 493 -1 O CYS D 493 N ALA D 425 SHEET 3 AB3 5 ASN D 479 TYR D 486 -1 N TYR D 486 O PHE D 490 SHEET 4 AB3 5 ALA D 466 VAL D 472 -1 N LEU D 469 O PHE D 483 SHEET 5 AB3 5 VAL D 509 VAL D 516 -1 O SER D 514 N LEU D 468 LINK O4 NAG E 1 C1 GAL E 2 1555 1555 1.43 LINK O2 GAL E 2 C1 FUC E 3 1555 1555 1.44 LINK O3 GAL E 2 C1 A2G E 4 1555 1555 1.44 LINK O4 NAG F 1 C1 GAL F 2 1555 1555 1.44 LINK O2 GAL F 2 C1 FUC F 3 1555 1555 1.44 LINK O3 GAL F 2 C1 A2G F 4 1555 1555 1.44 LINK O4 NAG G 1 C1 GAL G 2 1555 1555 1.44 LINK O2 GAL G 2 C1 FUC G 3 1555 1555 1.44 LINK O3 GAL G 2 C1 A2G G 4 1555 1555 1.44 CRYST1 62.580 63.260 90.430 99.25 97.82 119.62 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015980 0.009085 0.004770 0.00000 SCALE2 0.000000 0.018184 0.004992 0.00000 SCALE3 0.000000 0.000000 0.011575 0.00000