HEADER SOLUTE-BINDING PROTEIN 12-MAR-14 4P47 TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 OCHROBACTRUM ANTHROPI (OANT_4429), TARGET EFI-510151, C-TERMIUS BOUND TITLE 3 IN LIGAND BINDING POCKET COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER, DCTP SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TRAP PERIPLASMIC SOLUTE BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCHROBACTRUM ANTHROPI; SOURCE 3 ORGANISM_TAXID: 439375; SOURCE 4 STRAIN: ATCC 49188; SOURCE 5 GENE: OANT_4429; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 6 27-DEC-23 4P47 1 REMARK REVDAT 5 25-DEC-19 4P47 1 REMARK REVDAT 4 27-SEP-17 4P47 1 SOURCE KEYWDS JRNL REMARK REVDAT 3 25-FEB-15 4P47 1 JRNL REVDAT 2 30-APR-14 4P47 1 REMARK REVDAT 1 23-APR-14 4P47 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.94 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 70429 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.188 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 23.9389 - 3.7964 0.98 2845 141 0.1683 0.1796 REMARK 3 2 3.7964 - 3.0152 1.00 2771 139 0.1535 0.1796 REMARK 3 3 3.0152 - 2.6346 1.00 2716 170 0.1630 0.1873 REMARK 3 4 2.6346 - 2.3940 1.00 2738 145 0.1565 0.1929 REMARK 3 5 2.3940 - 2.2225 1.00 2697 155 0.1474 0.1619 REMARK 3 6 2.2225 - 2.0916 1.00 2688 154 0.1410 0.1605 REMARK 3 7 2.0916 - 1.9869 1.00 2714 131 0.1450 0.1499 REMARK 3 8 1.9869 - 1.9004 1.00 2690 128 0.1475 0.1902 REMARK 3 9 1.9004 - 1.8273 1.00 2679 154 0.1469 0.2001 REMARK 3 10 1.8273 - 1.7642 1.00 2663 148 0.1503 0.1674 REMARK 3 11 1.7642 - 1.7091 1.00 2680 145 0.1489 0.1760 REMARK 3 12 1.7091 - 1.6603 1.00 2648 156 0.1557 0.1748 REMARK 3 13 1.6603 - 1.6166 1.00 2676 139 0.1476 0.2005 REMARK 3 14 1.6166 - 1.5771 1.00 2667 166 0.1521 0.1810 REMARK 3 15 1.5771 - 1.5413 1.00 2623 150 0.1611 0.1884 REMARK 3 16 1.5413 - 1.5085 1.00 2636 140 0.1651 0.2003 REMARK 3 17 1.5085 - 1.4783 1.00 2680 133 0.1828 0.2189 REMARK 3 18 1.4783 - 1.4504 0.99 2654 143 0.1918 0.2278 REMARK 3 19 1.4504 - 1.4245 0.99 2658 107 0.1975 0.2241 REMARK 3 20 1.4245 - 1.4004 1.00 2669 127 0.2019 0.2441 REMARK 3 21 1.4004 - 1.3778 0.99 2636 153 0.2018 0.2265 REMARK 3 22 1.3778 - 1.3566 0.99 2604 137 0.2221 0.2601 REMARK 3 23 1.3566 - 1.3366 0.99 2663 126 0.2384 0.2202 REMARK 3 24 1.3366 - 1.3178 0.99 2595 143 0.2547 0.2947 REMARK 3 25 1.3178 - 1.3000 0.97 2577 132 0.2740 0.2831 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 10.59 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2589 REMARK 3 ANGLE : 1.253 3511 REMARK 3 CHIRALITY : 0.070 397 REMARK 3 PLANARITY : 0.007 465 REMARK 3 DIHEDRAL : 13.367 982 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 42 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0456 -3.2340 35.7546 REMARK 3 T TENSOR REMARK 3 T11: 0.0928 T22: 0.0996 REMARK 3 T33: 0.0960 T12: -0.0026 REMARK 3 T13: -0.0175 T23: -0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.2224 L22: 0.2033 REMARK 3 L33: 0.2165 L12: -0.2827 REMARK 3 L13: -0.0246 L23: -0.0481 REMARK 3 S TENSOR REMARK 3 S11: -0.0171 S12: 0.0697 S13: -0.1196 REMARK 3 S21: 0.0459 S22: 0.1251 S23: -0.1816 REMARK 3 S31: 0.0349 S32: 0.1883 S33: 0.0021 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 43 THROUGH 156 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5573 1.2391 30.8160 REMARK 3 T TENSOR REMARK 3 T11: 0.0618 T22: 0.0463 REMARK 3 T33: 0.0387 T12: -0.0000 REMARK 3 T13: 0.0078 T23: 0.0005 REMARK 3 L TENSOR REMARK 3 L11: 0.8752 L22: 0.5738 REMARK 3 L33: 0.1161 L12: 0.2969 REMARK 3 L13: 0.2236 L23: 0.1539 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: 0.0014 S13: 0.0539 REMARK 3 S21: 0.0825 S22: 0.0006 S23: -0.0026 REMARK 3 S31: 0.0218 S32: 0.0129 S33: -0.0000 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 157 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.2235 -11.3729 26.2104 REMARK 3 T TENSOR REMARK 3 T11: 0.0731 T22: 0.0732 REMARK 3 T33: 0.0688 T12: -0.0033 REMARK 3 T13: -0.0020 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.4728 L22: 0.3014 REMARK 3 L33: 0.3361 L12: 0.0226 REMARK 3 L13: -0.1474 L23: 0.0789 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: -0.0212 S13: 0.0558 REMARK 3 S21: 0.0095 S22: -0.0768 S23: 0.1219 REMARK 3 S31: 0.0552 S32: -0.0578 S33: 0.0127 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 289 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.9019 -5.5339 24.3196 REMARK 3 T TENSOR REMARK 3 T11: 0.0578 T22: 0.0511 REMARK 3 T33: 0.0479 T12: 0.0019 REMARK 3 T13: -0.0013 T23: -0.0025 REMARK 3 L TENSOR REMARK 3 L11: 0.5864 L22: 0.5546 REMARK 3 L33: 0.1116 L12: 0.2632 REMARK 3 L13: 0.1653 L23: 0.1673 REMARK 3 S TENSOR REMARK 3 S11: 0.0039 S12: 0.0255 S13: -0.0152 REMARK 3 S21: 0.0238 S22: 0.0150 S23: -0.0787 REMARK 3 S31: 0.0143 S32: 0.0167 S33: -0.0729 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 290 THROUGH 319 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.6101 1.8014 19.2203 REMARK 3 T TENSOR REMARK 3 T11: 0.1035 T22: 0.1062 REMARK 3 T33: 0.0937 T12: 0.0154 REMARK 3 T13: -0.0042 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 0.5804 L22: 0.1547 REMARK 3 L33: 0.0939 L12: 0.0288 REMARK 3 L13: -0.0422 L23: -0.0166 REMARK 3 S TENSOR REMARK 3 S11: 0.0286 S12: 0.0276 S13: 0.1404 REMARK 3 S21: -0.0533 S22: -0.0719 S23: 0.0792 REMARK 3 S31: -0.0611 S32: -0.0565 S33: 0.0068 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 320 THROUGH 345 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.3636 11.8012 13.6911 REMARK 3 T TENSOR REMARK 3 T11: 0.1718 T22: 0.1511 REMARK 3 T33: 0.1721 T12: -0.0149 REMARK 3 T13: 0.0251 T23: -0.0055 REMARK 3 L TENSOR REMARK 3 L11: -0.0880 L22: -0.3185 REMARK 3 L33: 0.0440 L12: 0.0013 REMARK 3 L13: 0.0213 L23: 0.0880 REMARK 3 S TENSOR REMARK 3 S11: -0.0614 S12: 0.0243 S13: 0.2008 REMARK 3 S21: -0.0245 S22: -0.0272 S23: 0.1072 REMARK 3 S31: 0.0332 S32: -0.1063 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P47 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 70496 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 25.535 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10800 REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.78200 REMARK 200 R SYM FOR SHELL (I) : 0.78200 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THICK LEAF PEDDLES REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (40.24 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT); RESERVOIR (0.2 M AMMONIUM SULFATE, 20 %(W/V) PEG REMARK 280 3350); CRYOPROTECTION (20% ETHYLENE GLYCOL, 80% RESERVOIR), REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.09150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.21550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.34750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.21550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.09150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.34750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 2 REMARK 465 LYS A 3 REMARK 465 ILE A 4 REMARK 465 LEU A 5 REMARK 465 LYS A 6 REMARK 465 THR A 7 REMARK 465 MET A 8 REMARK 465 ALA A 9 REMARK 465 LEU A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 VAL A 13 REMARK 465 LEU A 14 REMARK 465 PRO A 15 REMARK 465 LEU A 16 REMARK 465 ALA A 17 REMARK 465 LEU A 18 REMARK 465 MET A 19 REMARK 465 THR A 20 REMARK 465 THR A 21 REMARK 465 THR A 22 REMARK 465 ALA A 23 REMARK 465 MET A 24 REMARK 465 ALA A 25 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER A 99 O HOH A 769 2.00 REMARK 500 O HOH A 539 O HOH A 551 2.05 REMARK 500 OD1 ASN A 64 O HOH A 874 2.13 REMARK 500 O HOH A 409 O HOH A 549 2.15 REMARK 500 OE1 GLU A 326 O HOH A 750 2.16 REMARK 500 O HOH A 444 O HOH A 546 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 476 O HOH A 539 2455 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 149 -64.28 -93.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 848 DISTANCE = 6.10 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510151 RELATED DB: TARGETTRACK DBREF 4P47 A 1 338 UNP A6X7C5 A6X7C5_OCHA4 1 338 SEQADV 4P47 ALA A 339 UNP A6X7C5 EXPRESSION TAG SEQADV 4P47 GLU A 340 UNP A6X7C5 EXPRESSION TAG SEQADV 4P47 ASN A 341 UNP A6X7C5 EXPRESSION TAG SEQADV 4P47 LEU A 342 UNP A6X7C5 EXPRESSION TAG SEQADV 4P47 TYR A 343 UNP A6X7C5 EXPRESSION TAG SEQADV 4P47 PHE A 344 UNP A6X7C5 EXPRESSION TAG SEQADV 4P47 GLN A 345 UNP A6X7C5 EXPRESSION TAG SEQRES 1 A 345 MET LYS LYS ILE LEU LYS THR MET ALA LEU GLY VAL VAL SEQRES 2 A 345 LEU PRO LEU ALA LEU MET THR THR THR ALA MET ALA GLU SEQRES 3 A 345 ILE ARG SER GLN THR ILE LYS PHE ALA ALA ALA ASN SER SEQRES 4 A 345 LYS GLY HIS PRO GLN VAL THR GLY MET GLU LYS PHE ALA SEQRES 5 A 345 GLU LEU VAL LYS GLU LYS SER GLY GLY GLN ILE ASN VAL SEQRES 6 A 345 LYS LEU PHE PRO GLY GLY VAL LEU GLY SER ASP PRO GLN SEQRES 7 A 345 THR LEU SER GLY LEU GLN GLY GLY VAL VAL GLU MET THR SEQRES 8 A 345 VAL MET ASN ALA GLY ILE LEU SER SER THR VAL LYS ALA SEQRES 9 A 345 PHE GLU ALA VAL ASP LEU PRO PHE LEU PHE ASN SER GLY SEQRES 10 A 345 GLU GLU ALA ASP LYS VAL MET ASP GLY PRO PHE GLY THR SEQRES 11 A 345 ASN LEU MET LYS ARG LEU PRO ASP THR GLY LEU ILE GLY SEQRES 12 A 345 LEU ALA TYR TRP GLU LEU GLY PHE ARG ASN LEU THR ASN SEQRES 13 A 345 ASN ARG HIS PRO VAL ALA LYS LEU GLU ASP ILE ALA GLY SEQRES 14 A 345 LEU LYS ILE ARG THR LEU GLN SER PRO VAL PRO VAL ALA SEQRES 15 A 345 LEU PHE ASN ALA LEU GLY ALA ASN ALA VAL PRO LEU PRO SEQRES 16 A 345 TYR THR GLU LEU TYR THR ALA LEU GLU THR GLY THR VAL SEQRES 17 A 345 ASP GLY GLN GLU ASN PRO ASN ALA ASN ILE ILE ASN ALA SEQRES 18 A 345 LYS PHE TYR GLU VAL GLN LYS TYR LEU THR LEU THR ARG SEQRES 19 A 345 HIS GLN TYR ASN PRO GLN ILE VAL MET ILE SER LYS LYS SEQRES 20 A 345 PHE TRP ASP ARG LEU ASN ASP GLU GLU LYS ALA VAL ILE SEQRES 21 A 345 GLU GLN ALA ALA VAL GLU ALA ARG ASP TYR GLN ARG LYS SEQRES 22 A 345 VAL SER ARG GLU GLN ASP ALA THR ALA LEU ASP GLU ILE SEQRES 23 A 345 LYS LYS THR GLY MET GLN VAL THR GLU LEU THR PRO GLU SEQRES 24 A 345 GLU THR THR ARG LEU ARG ASP ALA VAL LYS PRO ILE ILE SEQRES 25 A 345 ASP LYS PHE THR ALA GLU ILE GLY ALA GLU THR VAL ASP SEQRES 26 A 345 GLU LEU PHE ALA GLU LEU LYS LYS VAL ARG GLY GLU ASN SEQRES 27 A 345 ALA GLU ASN LEU TYR PHE GLN FORMUL 2 HOH *481(H2 O) HELIX 1 AA1 HIS A 42 SER A 59 1 18 HELIX 2 AA2 SER A 75 GLY A 85 1 11 HELIX 3 AA3 GLY A 96 THR A 101 5 6 HELIX 4 AA4 VAL A 102 LEU A 110 5 9 HELIX 5 AA5 SER A 116 GLY A 126 1 11 HELIX 6 AA6 GLY A 126 LYS A 134 1 9 HELIX 7 AA7 ARG A 135 THR A 139 5 5 HELIX 8 AA8 LYS A 163 ALA A 168 1 6 HELIX 9 AA9 SER A 177 LEU A 187 1 11 HELIX 10 AB1 PRO A 195 THR A 197 5 3 HELIX 11 AB2 GLU A 198 GLY A 206 1 9 HELIX 12 AB3 ASN A 215 ALA A 221 1 7 HELIX 13 AB4 LYS A 222 VAL A 226 5 5 HELIX 14 AB5 LYS A 246 ASP A 250 1 5 HELIX 15 AB6 ASN A 253 THR A 289 1 37 HELIX 16 AB7 THR A 297 ASP A 313 1 17 HELIX 17 AB8 PHE A 315 GLY A 320 1 6 HELIX 18 AB9 GLY A 320 GLU A 337 1 18 HELIX 19 AC1 ASN A 338 TYR A 343 5 6 SHEET 1 AA1 8 ILE A 63 PHE A 68 0 SHEET 2 AA1 8 GLN A 30 ALA A 35 1 N ILE A 32 O LYS A 66 SHEET 3 AA1 8 MET A 90 ASN A 94 1 O MET A 90 N LYS A 33 SHEET 4 AA1 8 TYR A 229 SER A 245 -1 O MET A 243 N THR A 91 SHEET 5 AA1 8 LEU A 141 ASN A 156 -1 N LEU A 144 O VAL A 242 SHEET 6 AA1 8 GLY A 210 ASN A 213 -1 O GLN A 211 N THR A 155 SHEET 7 AA1 8 LYS A 171 ARG A 173 1 N ARG A 173 O GLY A 210 SHEET 8 AA1 8 ASN A 190 VAL A 192 1 O ASN A 190 N ILE A 172 SHEET 1 AA2 5 ILE A 63 PHE A 68 0 SHEET 2 AA2 5 GLN A 30 ALA A 35 1 N ILE A 32 O LYS A 66 SHEET 3 AA2 5 MET A 90 ASN A 94 1 O MET A 90 N LYS A 33 SHEET 4 AA2 5 TYR A 229 SER A 245 -1 O MET A 243 N THR A 91 SHEET 5 AA2 5 GLN A 292 GLU A 295 1 O THR A 294 N LEU A 230 CRYST1 54.183 68.695 76.431 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018456 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014557 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013084 0.00000