HEADER DE NOVO PROTEIN 13-MAR-14 4P4X TITLE DODECAMER FORMED BY A MACROCYCLIC PEPTIDE DERIVED FROM BETA-2- TITLE 2 MICROGLOBULIN (63-69) - (ORN)YLL(PHI)YTE(ORN)KVA(MLE)AVK COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC HEXADECAPEPTIDE (ORN)YLL(PH7)YTE(ORN)KVA(MLE)AVK; COMPND 3 CHAIN: A, B, C, D, E, F, G, H, I, J, K, L; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS AMYLOID, BETA-2-MICROGLOBULIN, MACROCYCLE, DODECAMER, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.K.SPENCER,J.S.NOWICK REVDAT 4 27-DEC-23 4P4X 1 SOURCE REMARK LINK REVDAT 3 03-JUN-15 4P4X 1 JRNL REVDAT 2 13-MAY-15 4P4X 1 JRNL REVDAT 1 06-MAY-15 4P4X 0 JRNL AUTH R.K.SPENCER,A.G.KREUTZER,P.J.SALVESON,H.LI,J.S.NOWICK JRNL TITL X-RAY CRYSTALLOGRAPHIC STRUCTURES OF OLIGOMERS OF PEPTIDES JRNL TITL 2 DERIVED FROM BETA 2-MICROGLOBULIN. JRNL REF J.AM.CHEM.SOC. V. 137 6304 2015 JRNL REFN ESSN 1520-5126 JRNL PMID 25915729 JRNL DOI 10.1021/JACS.5B01673 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.30 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 32770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.212 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3284 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.3011 - 5.3888 1.00 1277 146 0.2086 0.2197 REMARK 3 2 5.3888 - 4.2804 1.00 1306 140 0.1642 0.1905 REMARK 3 3 4.2804 - 3.7403 1.00 1288 141 0.1775 0.1755 REMARK 3 4 3.7403 - 3.3987 1.00 1283 140 0.1912 0.2221 REMARK 3 5 3.3987 - 3.1553 1.00 1285 146 0.1969 0.2214 REMARK 3 6 3.1553 - 2.9694 1.00 1279 147 0.1981 0.2304 REMARK 3 7 2.9694 - 2.8208 1.00 1295 145 0.1976 0.2531 REMARK 3 8 2.8208 - 2.6981 1.00 1266 147 0.2127 0.2669 REMARK 3 9 2.6981 - 2.5942 1.00 1283 150 0.2437 0.2702 REMARK 3 10 2.5942 - 2.5048 1.00 1290 144 0.2242 0.2507 REMARK 3 11 2.5048 - 2.4265 1.00 1289 138 0.2244 0.2583 REMARK 3 12 2.4265 - 2.3571 1.00 1280 140 0.2225 0.2662 REMARK 3 13 2.3571 - 2.2951 1.00 1300 143 0.2372 0.2535 REMARK 3 14 2.2951 - 2.2391 1.00 1290 140 0.2291 0.2857 REMARK 3 15 2.2391 - 2.1882 1.00 1271 144 0.2436 0.2988 REMARK 3 16 2.1882 - 2.1417 1.00 1283 146 0.2587 0.2579 REMARK 3 17 2.1417 - 2.0988 1.00 1294 143 0.2341 0.2718 REMARK 3 18 2.0988 - 2.0592 1.00 1284 144 0.2387 0.2948 REMARK 3 19 2.0592 - 2.0225 1.00 1279 143 0.2662 0.2824 REMARK 3 20 2.0225 - 1.9882 1.00 1285 146 0.2786 0.2870 REMARK 3 21 1.9882 - 1.9561 1.00 1277 137 0.2827 0.3309 REMARK 3 22 1.9561 - 1.9260 1.00 1301 143 0.2914 0.3176 REMARK 3 23 1.9260 - 1.8980 0.92 1201 131 0.3259 0.3547 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.030 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1688 REMARK 3 ANGLE : 1.442 2268 REMARK 3 CHIRALITY : 0.062 252 REMARK 3 PLANARITY : 0.007 252 REMARK 3 DIHEDRAL : 29.554 756 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3767 11.8104 5.1810 REMARK 3 T TENSOR REMARK 3 T11: 0.3050 T22: 0.3758 REMARK 3 T33: 0.1454 T12: -0.1413 REMARK 3 T13: -0.1045 T23: 0.0881 REMARK 3 L TENSOR REMARK 3 L11: 7.4118 L22: 7.1310 REMARK 3 L33: 6.8984 L12: -5.0230 REMARK 3 L13: -2.5778 L23: 1.1327 REMARK 3 S TENSOR REMARK 3 S11: -0.1670 S12: -0.4671 S13: 0.6517 REMARK 3 S21: 0.6285 S22: -0.0604 S23: -0.3243 REMARK 3 S31: -0.1281 S32: 0.1177 S33: 0.3164 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6400 13.0380 20.8094 REMARK 3 T TENSOR REMARK 3 T11: 0.2742 T22: 0.3123 REMARK 3 T33: 0.3465 T12: -0.1229 REMARK 3 T13: -0.1652 T23: 0.1092 REMARK 3 L TENSOR REMARK 3 L11: 3.2976 L22: 1.1149 REMARK 3 L33: 3.0917 L12: -1.3296 REMARK 3 L13: 1.1374 L23: -1.6914 REMARK 3 S TENSOR REMARK 3 S11: -0.0883 S12: 0.4553 S13: -0.4197 REMARK 3 S21: -0.2889 S22: 0.1334 S23: 0.0780 REMARK 3 S31: 0.5343 S32: -0.2812 S33: -0.8201 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8975 23.4800 13.3956 REMARK 3 T TENSOR REMARK 3 T11: 0.2786 T22: 0.2583 REMARK 3 T33: 0.3728 T12: -0.0218 REMARK 3 T13: -0.1686 T23: 0.1651 REMARK 3 L TENSOR REMARK 3 L11: 7.7153 L22: 5.2289 REMARK 3 L33: 2.5068 L12: 4.9524 REMARK 3 L13: 2.2344 L23: 2.6295 REMARK 3 S TENSOR REMARK 3 S11: -0.5538 S12: 0.8788 S13: -0.0481 REMARK 3 S21: -0.4512 S22: 0.4625 S23: -0.7848 REMARK 3 S31: -0.3059 S32: 0.1258 S33: 0.4338 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9263 20.4370 23.1693 REMARK 3 T TENSOR REMARK 3 T11: 0.2868 T22: 0.1782 REMARK 3 T33: 0.2584 T12: -0.0640 REMARK 3 T13: -0.2061 T23: 0.0665 REMARK 3 L TENSOR REMARK 3 L11: 1.0926 L22: 7.1452 REMARK 3 L33: 4.1798 L12: -0.8421 REMARK 3 L13: 0.3846 L23: -2.8328 REMARK 3 S TENSOR REMARK 3 S11: 0.1551 S12: 0.0458 S13: -0.0615 REMARK 3 S21: 0.0577 S22: -0.3658 S23: -1.5818 REMARK 3 S31: -0.0647 S32: 0.1694 S33: -0.5577 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9420 4.2210 12.3115 REMARK 3 T TENSOR REMARK 3 T11: 0.3484 T22: 0.3673 REMARK 3 T33: 0.1962 T12: -0.1985 REMARK 3 T13: -0.0739 T23: 0.1064 REMARK 3 L TENSOR REMARK 3 L11: 3.1198 L22: 4.5086 REMARK 3 L33: 2.6379 L12: -2.6738 REMARK 3 L13: -0.2908 L23: 1.1112 REMARK 3 S TENSOR REMARK 3 S11: -0.0718 S12: 0.2383 S13: 0.4572 REMARK 3 S21: -0.0518 S22: -0.1352 S23: -1.0681 REMARK 3 S31: 0.1897 S32: 0.1198 S33: 0.3216 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'F' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5026 13.0906 5.1340 REMARK 3 T TENSOR REMARK 3 T11: 0.3309 T22: 0.2282 REMARK 3 T33: 0.0695 T12: -0.0860 REMARK 3 T13: -0.1776 T23: 0.3279 REMARK 3 L TENSOR REMARK 3 L11: 6.5021 L22: 5.3629 REMARK 3 L33: 1.7356 L12: 1.4043 REMARK 3 L13: -0.9116 L23: -1.3359 REMARK 3 S TENSOR REMARK 3 S11: 0.2132 S12: 0.1452 S13: 1.4895 REMARK 3 S21: -0.1442 S22: 0.1064 S23: 1.0031 REMARK 3 S31: -0.0029 S32: -0.4879 S33: 0.0291 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'G' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.5105 6.1258 15.4526 REMARK 3 T TENSOR REMARK 3 T11: 0.3012 T22: 0.3026 REMARK 3 T33: 0.2766 T12: -0.0799 REMARK 3 T13: -0.2113 T23: 0.0906 REMARK 3 L TENSOR REMARK 3 L11: 5.6350 L22: 2.4019 REMARK 3 L33: 1.0773 L12: 2.9748 REMARK 3 L13: 0.8278 L23: 1.1607 REMARK 3 S TENSOR REMARK 3 S11: 0.1595 S12: -0.6665 S13: 0.3534 REMARK 3 S21: 0.9725 S22: -0.2742 S23: -0.0241 REMARK 3 S31: 0.3613 S32: -0.2814 S33: 0.6959 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'H' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0355 16.8335 11.9349 REMARK 3 T TENSOR REMARK 3 T11: 0.1662 T22: 0.3880 REMARK 3 T33: 0.3908 T12: -0.1557 REMARK 3 T13: -0.2720 T23: 0.2109 REMARK 3 L TENSOR REMARK 3 L11: 4.3499 L22: 3.4655 REMARK 3 L33: 6.6762 L12: -1.3761 REMARK 3 L13: 3.2943 L23: -2.9462 REMARK 3 S TENSOR REMARK 3 S11: -0.2097 S12: 0.1195 S13: 0.7370 REMARK 3 S21: 0.5724 S22: 0.3531 S23: 0.2646 REMARK 3 S31: -0.9242 S32: -0.0173 S33: -0.0318 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'I' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.3179 12.2357 26.6916 REMARK 3 T TENSOR REMARK 3 T11: 0.3624 T22: 0.2172 REMARK 3 T33: 0.4246 T12: -0.0759 REMARK 3 T13: -0.2289 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 5.1657 L22: 4.2021 REMARK 3 L33: 6.9734 L12: -2.4333 REMARK 3 L13: -5.7018 L23: 1.1645 REMARK 3 S TENSOR REMARK 3 S11: -0.0676 S12: 1.0327 S13: -0.2171 REMARK 3 S21: 0.3140 S22: -0.3066 S23: -0.4091 REMARK 3 S31: 0.2037 S32: -0.5640 S33: -0.0608 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'J' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6590 5.2511 28.4879 REMARK 3 T TENSOR REMARK 3 T11: 0.3412 T22: 0.1518 REMARK 3 T33: 0.2281 T12: -0.0637 REMARK 3 T13: -0.0864 T23: 0.0565 REMARK 3 L TENSOR REMARK 3 L11: 7.6731 L22: 4.0590 REMARK 3 L33: 6.8667 L12: 0.6759 REMARK 3 L13: -4.2168 L23: -0.6902 REMARK 3 S TENSOR REMARK 3 S11: 0.2122 S12: -0.1084 S13: 0.1369 REMARK 3 S21: 0.2264 S22: -0.0074 S23: 0.0399 REMARK 3 S31: -0.1695 S32: -0.0085 S33: 0.7045 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'K' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.7464 28.2826 4.1292 REMARK 3 T TENSOR REMARK 3 T11: 0.2965 T22: 0.3829 REMARK 3 T33: 0.4345 T12: -0.0508 REMARK 3 T13: -0.0320 T23: 0.3203 REMARK 3 L TENSOR REMARK 3 L11: 5.3594 L22: 6.7252 REMARK 3 L33: 7.3766 L12: 0.3770 REMARK 3 L13: -2.2007 L23: 0.9801 REMARK 3 S TENSOR REMARK 3 S11: -0.3032 S12: -0.0680 S13: -0.9425 REMARK 3 S21: 0.8725 S22: -0.0924 S23: -0.7023 REMARK 3 S31: 0.3206 S32: 0.5733 S33: 0.1939 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN 'L' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2778 30.0030 13.2225 REMARK 3 T TENSOR REMARK 3 T11: 0.5504 T22: 0.4739 REMARK 3 T33: 1.0296 T12: -0.2909 REMARK 3 T13: -0.1914 T23: 0.2878 REMARK 3 L TENSOR REMARK 3 L11: 6.7486 L22: 2.0149 REMARK 3 L33: 5.5912 L12: 1.8932 REMARK 3 L13: 0.7558 L23: 2.2464 REMARK 3 S TENSOR REMARK 3 S11: -0.5648 S12: 0.5135 S13: 1.3594 REMARK 3 S21: -0.6652 S22: -0.0686 S23: -0.2851 REMARK 3 S31: -1.3295 S32: -0.3239 S33: -0.2275 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P4X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200660. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35831 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.897 REMARK 200 RESOLUTION RANGE LOW (A) : 32.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.02883 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.38290 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.020 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, PH 7.5; 0.2 M LITHIUM REMARK 280 SULFATE; 25% PEG 400, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.98150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.49075 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.47225 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 56.98150 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 85.47225 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 28.49075 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 E 101 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C VAL H 15 H LYS H 16 1.18 REMARK 500 C VAL I 15 H LYS I 16 1.28 REMARK 500 O HOH C 209 O HOH G 207 2.04 REMARK 500 O HOH J 103 O HOH J 104 2.08 REMARK 500 O HOH A 209 O HOH C 208 2.09 REMARK 500 O HOH C 208 O HOH F 101 2.10 REMARK 500 O HOH D 103 O HOH I 103 2.12 REMARK 500 O HOH B 102 O HOH C 203 2.13 REMARK 500 O HOH B 102 O HOH D 101 2.16 REMARK 500 O HOH C 203 O HOH D 101 2.16 REMARK 500 O HOH F 102 O HOH G 205 2.16 REMARK 500 O3 SO4 G 101 O HOH G 201 2.18 REMARK 500 O HOH A 210 O HOH F 104 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH C 209 DISTANCE = 5.96 ANGSTROMS REMARK 525 HOH G 207 DISTANCE = 6.51 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P4V RELATED DB: PDB REMARK 900 RELATED ID: 4P4W RELATED DB: PDB REMARK 900 RELATED ID: 4P4Y RELATED DB: PDB REMARK 900 RELATED ID: 4P4Z RELATED DB: PDB DBREF 4P4X A 1 16 PDB 4P4X 4P4X 1 16 DBREF 4P4X B 1 16 PDB 4P4X 4P4X 1 16 DBREF 4P4X C 1 16 PDB 4P4X 4P4X 1 16 DBREF 4P4X D 1 16 PDB 4P4X 4P4X 1 16 DBREF 4P4X E 1 16 PDB 4P4X 4P4X 1 16 DBREF 4P4X F 1 16 PDB 4P4X 4P4X 1 16 DBREF 4P4X G 1 16 PDB 4P4X 4P4X 1 16 DBREF 4P4X H 1 16 PDB 4P4X 4P4X 1 16 DBREF 4P4X I 1 16 PDB 4P4X 4P4X 1 16 DBREF 4P4X J 1 16 PDB 4P4X 4P4X 1 16 DBREF 4P4X K 1 16 PDB 4P4X 4P4X 1 16 DBREF 4P4X L 1 16 PDB 4P4X 4P4X 1 16 SEQRES 1 A 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 A 16 ALA VAL LYS SEQRES 1 B 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 B 16 ALA VAL LYS SEQRES 1 C 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 C 16 ALA VAL LYS SEQRES 1 D 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 D 16 ALA VAL LYS SEQRES 1 E 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 E 16 ALA VAL LYS SEQRES 1 F 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 F 16 ALA VAL LYS SEQRES 1 G 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 G 16 ALA VAL LYS SEQRES 1 H 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 H 16 ALA VAL LYS SEQRES 1 I 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 I 16 ALA VAL LYS SEQRES 1 J 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 J 16 ALA VAL LYS SEQRES 1 K 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 K 16 ALA VAL LYS SEQRES 1 L 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL ALA MLE SEQRES 2 L 16 ALA VAL LYS HET ORN A 1 18 HET PHI A 5 20 HET ORN A 9 18 HET MLE A 13 22 HET ORN B 1 18 HET PHI B 5 20 HET ORN B 9 18 HET MLE B 13 22 HET ORN C 1 18 HET PHI C 5 20 HET ORN C 9 18 HET MLE C 13 22 HET ORN D 1 18 HET PHI D 5 20 HET ORN D 9 18 HET MLE D 13 22 HET ORN E 1 18 HET PHI E 5 20 HET ORN E 9 18 HET MLE E 13 22 HET ORN F 1 18 HET PHI F 5 20 HET ORN F 9 18 HET MLE F 13 22 HET ORN G 1 18 HET PHI G 5 20 HET ORN G 9 18 HET MLE G 13 22 HET ORN H 1 18 HET PHI H 5 20 HET ORN H 9 17 HET MLE H 13 22 HET ORN I 1 18 HET PHI I 5 20 HET ORN I 9 18 HET MLE I 13 22 HET ORN J 1 18 HET PHI J 5 20 HET ORN J 9 18 HET MLE J 13 22 HET ORN K 1 18 HET PHI K 5 20 HET ORN K 9 18 HET MLE K 13 22 HET ORN L 1 18 HET PHI L 5 20 HET ORN L 9 18 HET MLE L 13 22 HET SO4 A 101 5 HET SO4 A 102 5 HET SO4 A 103 5 HET SO4 C 101 5 HET SO4 E 101 5 HET SO4 G 101 5 HET SO4 G 102 5 HET SO4 K 101 5 HET CL K 102 1 HET CL L 101 1 HETNAM ORN L-ORNITHINE HETNAM PHI IODO-PHENYLALANINE HETNAM MLE N-METHYLLEUCINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 1 ORN 24(C5 H12 N2 O2) FORMUL 1 PHI 12(C9 H10 I N O2) FORMUL 1 MLE 12(C7 H15 N O2) FORMUL 13 SO4 8(O4 S 2-) FORMUL 21 CL 2(CL 1-) FORMUL 23 HOH *70(H2 O) SHEET 1 AA1 6 VAL A 11 LYS A 16 0 SHEET 2 AA1 6 TYR A 2 THR A 7 -1 N LEU A 4 O ALA A 14 SHEET 3 AA1 6 VAL F 11 LYS F 16 -1 O MLE F 13 N LEU A 3 SHEET 4 AA1 6 TYR F 2 THR F 7 -1 N LEU F 4 O ALA F 14 SHEET 5 AA1 6 TYR G 2 THR G 7 -1 O PHI G 5 N LEU F 3 SHEET 6 AA1 6 VAL G 11 LYS G 16 -1 O LYS G 16 N TYR G 2 SHEET 1 AA2 7 VAL L 11 LYS L 16 0 SHEET 2 AA2 7 TYR L 2 THR L 7 -1 N LEU L 4 O ALA L 14 SHEET 3 AA2 7 ALA H 12 VAL H 15 -1 N MLE H 13 O LEU L 3 SHEET 4 AA2 7 TYR H 2 TYR H 6 -1 N LEU H 4 O ALA H 14 SHEET 5 AA2 7 TYR F 2 THR F 7 -1 N PHI F 5 O LEU H 3 SHEET 6 AA2 7 TYR G 2 THR G 7 -1 O PHI G 5 N LEU F 3 SHEET 7 AA2 7 TYR H 2 TYR H 6 -1 O PHI H 5 N LEU G 3 SHEET 1 AA3 8 VAL E 11 LYS E 16 0 SHEET 2 AA3 8 TYR E 2 THR E 7 -1 N TYR E 2 O LYS E 16 SHEET 3 AA3 8 VAL B 11 LYS B 16 -1 N MLE B 13 O LEU E 3 SHEET 4 AA3 8 TYR B 2 THR B 7 -1 N LEU B 4 O ALA B 14 SHEET 5 AA3 8 TYR C 2 THR C 7 -1 O PHI C 5 N LEU B 3 SHEET 6 AA3 8 VAL C 11 LYS C 16 -1 O LYS C 16 N TYR C 2 SHEET 7 AA3 8 TYR K 2 THR K 7 -1 O LEU K 3 N MLE C 13 SHEET 8 AA3 8 VAL K 11 LYS K 16 -1 O ALA K 14 N LEU K 4 SHEET 1 AA4 7 VAL I 11 LYS I 16 0 SHEET 2 AA4 7 TYR I 2 THR I 7 -1 N LEU I 4 O ALA I 14 SHEET 3 AA4 7 VAL D 11 LYS D 16 -1 N MLE D 13 O LEU I 3 SHEET 4 AA4 7 TYR D 2 THR D 7 -1 N LEU D 4 O ALA D 14 SHEET 5 AA4 7 TYR B 2 THR B 7 -1 N PHI B 5 O LEU D 3 SHEET 6 AA4 7 TYR C 2 THR C 7 -1 O PHI C 5 N LEU B 3 SHEET 7 AA4 7 TYR D 2 THR D 7 -1 O PHI D 5 N LEU C 3 SHEET 1 AA5 2 TYR J 2 THR J 7 0 SHEET 2 AA5 2 VAL J 11 LYS J 16 -1 O ALA J 14 N LEU J 4 LINK C ORN A 1 N TYR A 2 1555 1555 1.37 LINK NE ORN A 1 C LYS A 16 1555 1555 1.38 LINK C LEU A 4 N PHI A 5 1555 1555 1.33 LINK C PHI A 5 N TYR A 6 1555 1555 1.32 LINK C GLU A 8 NE ORN A 9 1555 1555 1.38 LINK C ORN A 9 N LYS A 10 1555 1555 1.38 LINK C ALA A 12 N MLE A 13 1555 1555 1.33 LINK C MLE A 13 N ALA A 14 1555 1555 1.33 LINK C ORN B 1 N TYR B 2 1555 1555 1.36 LINK NE ORN B 1 C LYS B 16 1555 1555 1.38 LINK C LEU B 4 N PHI B 5 1555 1555 1.32 LINK C PHI B 5 N TYR B 6 1555 1555 1.33 LINK C GLU B 8 NE ORN B 9 1555 1555 1.38 LINK C ORN B 9 N LYS B 10 1555 1555 1.37 LINK C ALA B 12 N MLE B 13 1555 1555 1.33 LINK C MLE B 13 N ALA B 14 1555 1555 1.33 LINK C ORN C 1 N TYR C 2 1555 1555 1.36 LINK NE ORN C 1 C LYS C 16 1555 1555 1.38 LINK C LEU C 4 N PHI C 5 1555 1555 1.33 LINK C PHI C 5 N TYR C 6 1555 1555 1.33 LINK C GLU C 8 NE ORN C 9 1555 1555 1.38 LINK C ORN C 9 N LYS C 10 1555 1555 1.37 LINK C ALA C 12 N MLE C 13 1555 1555 1.33 LINK C MLE C 13 N ALA C 14 1555 1555 1.33 LINK C ORN D 1 N TYR D 2 1555 1555 1.37 LINK NE ORN D 1 C LYS D 16 1555 1555 1.38 LINK C LEU D 4 N PHI D 5 1555 1555 1.33 LINK C PHI D 5 N TYR D 6 1555 1555 1.33 LINK C GLU D 8 NE ORN D 9 1555 1555 1.38 LINK C ORN D 9 N LYS D 10 1555 1555 1.36 LINK C ALA D 12 N MLE D 13 1555 1555 1.33 LINK C MLE D 13 N ALA D 14 1555 1555 1.32 LINK C ORN E 1 N TYR E 2 1555 1555 1.37 LINK NE ORN E 1 C LYS E 16 1555 1555 1.38 LINK C LEU E 4 N PHI E 5 1555 1555 1.33 LINK C PHI E 5 N TYR E 6 1555 1555 1.32 LINK C GLU E 8 NE ORN E 9 1555 1555 1.38 LINK C ORN E 9 N LYS E 10 1555 1555 1.38 LINK C ALA E 12 N MLE E 13 1555 1555 1.34 LINK C MLE E 13 N ALA E 14 1555 1555 1.32 LINK C ORN F 1 N TYR F 2 1555 1555 1.37 LINK NE ORN F 1 C LYS F 16 1555 1555 1.37 LINK C LEU F 4 N PHI F 5 1555 1555 1.33 LINK C PHI F 5 N TYR F 6 1555 1555 1.32 LINK C GLU F 8 NE ORN F 9 1555 1555 1.37 LINK C ORN F 9 N LYS F 10 1555 1555 1.37 LINK C ALA F 12 N MLE F 13 1555 1555 1.33 LINK C MLE F 13 N ALA F 14 1555 1555 1.33 LINK C ORN G 1 N TYR G 2 1555 1555 1.36 LINK NE ORN G 1 C LYS G 16 1555 1555 1.38 LINK C LEU G 4 N PHI G 5 1555 1555 1.32 LINK C PHI G 5 N TYR G 6 1555 1555 1.33 LINK C GLU G 8 NE ORN G 9 1555 1555 1.38 LINK C ORN G 9 N LYS G 10 1555 1555 1.37 LINK C ALA G 12 N MLE G 13 1555 1555 1.33 LINK C MLE G 13 N ALA G 14 1555 1555 1.33 LINK C ORN H 1 N TYR H 2 1555 1555 1.37 LINK NE ORN H 1 C LYS H 16 1555 1555 1.37 LINK C LEU H 4 N PHI H 5 1555 1555 1.33 LINK C PHI H 5 N TYR H 6 1555 1555 1.32 LINK C GLU H 8 NE ORN H 9 1555 1555 1.37 LINK C ORN H 9 N LYS H 10 1555 1555 1.37 LINK C ALA H 12 N MLE H 13 1555 1555 1.33 LINK C MLE H 13 N ALA H 14 1555 1555 1.33 LINK C ORN I 1 N TYR I 2 1555 1555 1.37 LINK NE ORN I 1 C LYS I 16 1555 1555 1.38 LINK C LEU I 4 N PHI I 5 1555 1555 1.33 LINK C PHI I 5 N TYR I 6 1555 1555 1.32 LINK C GLU I 8 NE ORN I 9 1555 1555 1.38 LINK C ORN I 9 N LYS I 10 1555 1555 1.38 LINK C ALA I 12 N MLE I 13 1555 1555 1.34 LINK C MLE I 13 N ALA I 14 1555 1555 1.32 LINK C ORN J 1 N TYR J 2 1555 1555 1.37 LINK NE ORN J 1 C LYS J 16 1555 1555 1.38 LINK C LEU J 4 N PHI J 5 1555 1555 1.32 LINK C PHI J 5 N TYR J 6 1555 1555 1.33 LINK C GLU J 8 NE ORN J 9 1555 1555 1.38 LINK C ORN J 9 N LYS J 10 1555 1555 1.38 LINK C ALA J 12 N MLE J 13 1555 1555 1.33 LINK C MLE J 13 N ALA J 14 1555 1555 1.32 LINK C ORN K 1 N TYR K 2 1555 1555 1.38 LINK NE ORN K 1 C LYS K 16 1555 1555 1.38 LINK C LEU K 4 N PHI K 5 1555 1555 1.33 LINK C PHI K 5 N TYR K 6 1555 1555 1.33 LINK C GLU K 8 NE ORN K 9 1555 1555 1.38 LINK C ORN K 9 N LYS K 10 1555 1555 1.38 LINK C ALA K 12 N MLE K 13 1555 1555 1.33 LINK C MLE K 13 N ALA K 14 1555 1555 1.33 LINK C ORN L 1 N TYR L 2 1555 1555 1.37 LINK NE ORN L 1 C LYS L 16 1555 1555 1.38 LINK C LEU L 4 N PHI L 5 1555 1555 1.32 LINK C PHI L 5 N TYR L 6 1555 1555 1.32 LINK C GLU L 8 NE ORN L 9 1555 1555 1.38 LINK C ORN L 9 N LYS L 10 1555 1555 1.38 LINK C ALA L 12 N MLE L 13 1555 1555 1.34 LINK C MLE L 13 N ALA L 14 1555 1555 1.33 CRYST1 61.343 61.343 113.963 90.00 90.00 90.00 P 41 2 2 96 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016302 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016302 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008775 0.00000 HETATM 1 N ORN A 1 11.699 6.258 0.519 1.00 40.48 N1+ ANISOU 1 N ORN A 1 4048 6802 4530 -386 -650 2239 N1+ HETATM 2 CA ORN A 1 10.333 6.717 0.394 1.00 37.54 C ANISOU 2 CA ORN A 1 3917 6190 4157 -526 -613 2026 C HETATM 3 CB ORN A 1 9.374 5.609 0.783 1.00 35.54 C ANISOU 3 CB ORN A 1 4094 5716 3694 -372 -541 1726 C HETATM 4 CG ORN A 1 9.321 4.473 -0.284 1.00 42.03 C ANISOU 4 CG ORN A 1 5151 6384 4433 -152 -355 1671 C HETATM 5 CD ORN A 1 8.429 4.822 -1.505 1.00 36.77 C ANISOU 5 CD ORN A 1 4576 5594 3802 -167 -257 1578 C HETATM 6 NE ORN A 1 7.064 4.990 -1.094 1.00 34.23 N ANISOU 6 NE ORN A 1 4380 5172 3454 -282 -292 1406 N HETATM 7 C ORN A 1 10.110 8.012 1.227 1.00 40.28 C ANISOU 7 C ORN A 1 4104 6587 4614 -838 -856 2060 C HETATM 8 O ORN A 1 11.015 8.518 1.908 1.00 45.50 O ANISOU 8 O ORN A 1 4471 7418 5399 -931 -1105 2103 O HETATM 9 H2 ORN A 1 11.887 5.786 1.406 1.00 48.58 H1+ HETATM 10 H ORN A 1 12.386 7.014 0.463 1.00 48.58 H1+ HETATM 11 HA ORN A 1 10.221 6.996 -0.658 1.00 45.05 H HETATM 12 HB2 ORN A 1 8.361 6.024 0.885 1.00 42.65 H HETATM 13 HB3 ORN A 1 9.708 5.171 1.734 1.00 42.65 H HETATM 14 HG2 ORN A 1 10.340 4.269 -0.633 1.00 50.43 H HETATM 15 HG3 ORN A 1 8.923 3.568 0.188 1.00 50.43 H HETATM 16 HD2 ORN A 1 8.788 5.752 -1.955 1.00 44.13 H HETATM 17 HD3 ORN A 1 8.478 3.997 -2.223 1.00 44.13 H HETATM 18 HE1 ORN A 1 6.535 4.132 -0.954 1.00 41.07 H