HEADER DE NOVO PROTEIN 13-MAR-14 4P4Y TITLE HEXAMER FORMED BY A MACROCYCLIC PEPTIDE DERIVED FROM BETA-2- TITLE 2 MICROGLOBULIN (63-69) - (ORN)YLL(PHI)YTE(ORN)KVT(MAA)TVK COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC HEXADECAPEPTIDE (ORN)YLL(PHI)YTE(ORN)KVT(MAA)TVK; COMPND 3 CHAIN: A, B, C, D, E, F, G; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS HEXAMER, AMYLOID, BETA-2-MICROGLOBULIN, MACROCYCLE, DE NOVO PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR R.K.SPENCER,H.LI,J.S.NOWICK REVDAT 6 27-DEC-23 4P4Y 1 REMARK LINK REVDAT 5 27-NOV-19 4P4Y 1 REMARK REVDAT 4 27-SEP-17 4P4Y 1 SOURCE REMARK REVDAT 3 03-JUN-15 4P4Y 1 JRNL REVDAT 2 13-MAY-15 4P4Y 1 JRNL REVDAT 1 06-MAY-15 4P4Y 0 JRNL AUTH R.K.SPENCER,A.G.KREUTZER,P.J.SALVESON,H.LI,J.S.NOWICK JRNL TITL X-RAY CRYSTALLOGRAPHIC STRUCTURES OF OLIGOMERS OF PEPTIDES JRNL TITL 2 DERIVED FROM BETA 2-MICROGLOBULIN. JRNL REF J.AM.CHEM.SOC. V. 137 6304 2015 JRNL REFN ESSN 1520-5126 JRNL PMID 25915729 JRNL DOI 10.1021/JACS.5B01673 REMARK 2 REMARK 2 RESOLUTION. 1.51 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.51 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.13 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 38062 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.175 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1907 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.1380 - 3.6362 0.91 2492 124 0.1590 0.1809 REMARK 3 2 3.6362 - 2.8867 0.92 2470 129 0.1415 0.1630 REMARK 3 3 2.8867 - 2.5219 0.94 2545 138 0.1575 0.1634 REMARK 3 4 2.5219 - 2.2914 0.94 2527 132 0.1451 0.1838 REMARK 3 5 2.2914 - 2.1272 0.94 2540 131 0.1515 0.1859 REMARK 3 6 2.1272 - 2.0018 0.94 2549 136 0.1514 0.1628 REMARK 3 7 2.0018 - 1.9016 0.96 2616 139 0.1458 0.1550 REMARK 3 8 1.9016 - 1.8188 0.96 2609 138 0.1514 0.1580 REMARK 3 9 1.8188 - 1.7488 0.97 2607 135 0.1539 0.1592 REMARK 3 10 1.7488 - 1.6884 0.98 2644 142 0.1712 0.1718 REMARK 3 11 1.6884 - 1.6356 0.99 2683 142 0.1910 0.1991 REMARK 3 12 1.6356 - 1.5889 0.99 2685 140 0.2088 0.2329 REMARK 3 13 1.5889 - 1.5471 1.00 2708 145 0.2166 0.2240 REMARK 3 14 1.5471 - 1.5090 0.93 2480 136 0.2543 0.2459 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1068 REMARK 3 ANGLE : 1.531 1446 REMARK 3 CHIRALITY : 0.082 171 REMARK 3 PLANARITY : 0.008 158 REMARK 3 DIHEDRAL : 31.469 507 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.3762 24.8433 68.4738 REMARK 3 T TENSOR REMARK 3 T11: 0.1885 T22: 0.1649 REMARK 3 T33: 0.1811 T12: -0.0362 REMARK 3 T13: -0.0006 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 4.3629 L22: 5.3305 REMARK 3 L33: 7.3233 L12: -4.3510 REMARK 3 L13: 4.4079 L23: -5.9639 REMARK 3 S TENSOR REMARK 3 S11: 0.1793 S12: 0.2202 S13: -0.3363 REMARK 3 S21: -0.4635 S22: -0.1121 S23: 0.2623 REMARK 3 S31: 0.1789 S32: 0.3244 S33: -0.1303 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5505 24.9044 72.4470 REMARK 3 T TENSOR REMARK 3 T11: 0.1671 T22: 0.2006 REMARK 3 T33: 0.2021 T12: -0.0246 REMARK 3 T13: -0.0153 T23: 0.0303 REMARK 3 L TENSOR REMARK 3 L11: 3.2480 L22: 9.0933 REMARK 3 L33: 2.8240 L12: -0.6587 REMARK 3 L13: -0.1017 L23: -0.0604 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: 0.0129 S13: -0.0828 REMARK 3 S21: -0.0325 S22: -0.0609 S23: 0.1794 REMARK 3 S31: -0.0511 S32: -0.2691 S33: 0.0523 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'C' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.9393 36.3083 75.4892 REMARK 3 T TENSOR REMARK 3 T11: 0.2304 T22: 0.1932 REMARK 3 T33: 0.1855 T12: -0.0159 REMARK 3 T13: -0.0460 T23: 0.0175 REMARK 3 L TENSOR REMARK 3 L11: 7.3303 L22: 3.0121 REMARK 3 L33: 5.0390 L12: 1.4563 REMARK 3 L13: -6.0399 L23: -1.7605 REMARK 3 S TENSOR REMARK 3 S11: 0.1535 S12: -0.0839 S13: 0.3770 REMARK 3 S21: -0.1264 S22: 0.1149 S23: 0.1228 REMARK 3 S31: -0.3701 S32: 0.0907 S33: -0.2666 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'D' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.1139 34.3870 101.8267 REMARK 3 T TENSOR REMARK 3 T11: 0.2443 T22: 0.1565 REMARK 3 T33: 0.1625 T12: -0.0402 REMARK 3 T13: 0.0056 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 5.6363 L22: 3.8927 REMARK 3 L33: 7.9087 L12: -1.8582 REMARK 3 L13: 4.6575 L23: -3.1128 REMARK 3 S TENSOR REMARK 3 S11: 0.1557 S12: -0.0404 S13: -0.3229 REMARK 3 S21: -0.0298 S22: 0.1317 S23: 0.2614 REMARK 3 S31: 0.3622 S32: -0.4409 S33: -0.3502 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'E' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.5109 37.9338 94.5649 REMARK 3 T TENSOR REMARK 3 T11: 0.2269 T22: 0.1867 REMARK 3 T33: 0.1639 T12: -0.0101 REMARK 3 T13: 0.0505 T23: 0.0376 REMARK 3 L TENSOR REMARK 3 L11: 7.7389 L22: 7.6110 REMARK 3 L33: 5.6498 L12: 3.8210 REMARK 3 L13: 2.8342 L23: 2.4409 REMARK 3 S TENSOR REMARK 3 S11: 0.0284 S12: 0.5509 S13: 0.1250 REMARK 3 S21: -0.5863 S22: 0.2330 S23: -0.6934 REMARK 3 S31: -0.3927 S32: 0.5289 S33: -0.2089 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'F' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1028 44.4071 106.7579 REMARK 3 T TENSOR REMARK 3 T11: 0.2776 T22: 0.2419 REMARK 3 T33: 0.2901 T12: -0.0138 REMARK 3 T13: -0.0788 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 6.3916 L22: 5.0696 REMARK 3 L33: 2.7896 L12: 0.4767 REMARK 3 L13: -4.1987 L23: -0.0623 REMARK 3 S TENSOR REMARK 3 S11: 0.2372 S12: -0.6834 S13: 0.3700 REMARK 3 S21: 0.5359 S22: 0.1114 S23: -1.1156 REMARK 3 S31: -0.2058 S32: 0.4376 S33: -0.1601 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'G' AND ( RESID 1 THROUGH 16 ) REMARK 3 ORIGIN FOR THE GROUP (A): -1.8393 8.5906 74.2641 REMARK 3 T TENSOR REMARK 3 T11: 0.1666 T22: 0.1670 REMARK 3 T33: 0.2163 T12: 0.0042 REMARK 3 T13: -0.0020 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 7.1630 L22: 7.5204 REMARK 3 L33: 3.4640 L12: 4.8880 REMARK 3 L13: 3.2031 L23: 5.1013 REMARK 3 S TENSOR REMARK 3 S11: -0.1611 S12: 0.2093 S13: 0.6525 REMARK 3 S21: -0.3719 S22: -0.1456 S23: 0.3133 REMARK 3 S31: -0.3804 S32: -0.0374 S33: 0.2727 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P4Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200657. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0-9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20672 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.509 REMARK 200 RESOLUTION RANGE LOW (A) : 33.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.05704 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.2600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.51 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.40930 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.170 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS BUFFER, PH 7.5; 0.2 M REMARK 280 LITHIUM SULFATE; 26% PEG 400, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 33.13000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 19.12761 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 51.54333 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 33.13000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 19.12761 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 51.54333 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 33.13000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 19.12761 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 51.54333 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 33.13000 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 19.12761 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 51.54333 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 33.13000 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 19.12761 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 51.54333 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 33.13000 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 19.12761 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 51.54333 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 38.25523 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 103.08667 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 38.25523 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 103.08667 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 38.25523 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 103.08667 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 38.25523 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 103.08667 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 38.25523 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 103.08667 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 38.25523 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 103.08667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 5850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -107.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 154.63000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -98.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 76.51046 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 206.17333 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5730 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 154.63000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 154.63000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 154.63000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL G 101 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H2 ORN F 1 O HOH F 101 1.25 REMARK 500 H2 ORN A 9 O HOH A 202 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 208 O HOH C 201 4556 1.70 REMARK 500 O HOH G 201 O HOH G 205 2555 2.11 REMARK 500 O HOH A 202 O HOH B 202 4556 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P4V RELATED DB: PDB REMARK 900 RELATED ID: 4P4W RELATED DB: PDB REMARK 900 RELATED ID: 4P4X RELATED DB: PDB REMARK 900 RELATED ID: 4P4Z RELATED DB: PDB DBREF 4P4Y A 1 16 PDB 4P4Y 4P4Y 1 16 DBREF 4P4Y B 1 16 PDB 4P4Y 4P4Y 1 16 DBREF 4P4Y C 1 16 PDB 4P4Y 4P4Y 1 16 DBREF 4P4Y D 1 16 PDB 4P4Y 4P4Y 1 16 DBREF 4P4Y E 1 16 PDB 4P4Y 4P4Y 1 16 DBREF 4P4Y F 1 16 PDB 4P4Y 4P4Y 1 16 DBREF 4P4Y G 1 16 PDB 4P4Y 4P4Y 1 16 SEQRES 1 A 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL THR MAA SEQRES 2 A 16 THR VAL LYS SEQRES 1 B 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL THR MAA SEQRES 2 B 16 THR VAL LYS SEQRES 1 C 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL THR MAA SEQRES 2 C 16 THR VAL LYS SEQRES 1 D 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL THR MAA SEQRES 2 D 16 THR VAL LYS SEQRES 1 E 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL THR MAA SEQRES 2 E 16 THR VAL LYS SEQRES 1 F 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL THR MAA SEQRES 2 F 16 THR VAL LYS SEQRES 1 G 16 ORN TYR LEU LEU PHI TYR THR GLU ORN LYS VAL THR MAA SEQRES 2 G 16 THR VAL LYS HET ORN A 1 18 HET PHI A 5 20 HET ORN A 9 18 HET MAA A 13 13 HET ORN B 1 18 HET PHI B 5 20 HET ORN B 9 18 HET MAA B 13 13 HET ORN C 1 18 HET PHI C 5 20 HET ORN C 9 18 HET MAA C 13 13 HET ORN D 1 18 HET PHI D 5 20 HET ORN D 9 18 HET MAA D 13 13 HET ORN E 1 18 HET PHI E 5 20 HET ORN E 9 18 HET MAA E 13 13 HET ORN F 1 18 HET PHI F 5 20 HET ORN F 9 18 HET MAA F 13 13 HET ORN G 1 18 HET PHI G 5 20 HET ORN G 9 18 HET MAA G 13 13 HET SO4 A 101 5 HET CL B 101 1 HET CL C 101 1 HET CL C 102 1 HET SO4 D 101 5 HET SO4 D 102 5 HET CL G 101 1 HETNAM ORN L-ORNITHINE HETNAM PHI IODO-PHENYLALANINE HETNAM MAA N-METHYL-L-ALANINE HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 1 ORN 14(C5 H12 N2 O2) FORMUL 1 PHI 7(C9 H10 I N O2) FORMUL 1 MAA 7(C4 H9 N O2) FORMUL 8 SO4 3(O4 S 2-) FORMUL 9 CL 4(CL 1-) FORMUL 15 HOH *80(H2 O) SHEET 1 AA1 4 THR A 12 LYS A 16 0 SHEET 2 AA1 4 TYR A 2 THR A 7 -1 N TYR A 6 O THR A 12 SHEET 3 AA1 4 TYR B 2 THR B 7 -1 O LEU B 3 N THR A 7 SHEET 4 AA1 4 THR B 12 LYS B 16 -1 O THR B 14 N LEU B 4 SHEET 1 AA2 2 TYR C 2 TYR C 6 0 SHEET 2 AA2 2 THR C 12 LYS C 16 -1 O THR C 12 N TYR C 6 SHEET 1 AA3 2 TYR D 2 TYR D 6 0 SHEET 2 AA3 2 THR D 12 LYS D 16 -1 O THR D 14 N LEU D 4 SHEET 1 AA4 2 TYR E 2 TYR E 6 0 SHEET 2 AA4 2 THR E 12 LYS E 16 -1 O THR E 12 N TYR E 6 SHEET 1 AA5 2 LEU F 3 TYR F 6 0 SHEET 2 AA5 2 THR F 12 VAL F 15 -1 O THR F 12 N TYR F 6 SHEET 1 AA6 2 TYR G 2 TYR G 6 0 SHEET 2 AA6 2 THR G 12 LYS G 16 -1 O THR G 12 N TYR G 6 LINK C ORN A 1 N TYR A 2 1555 1555 1.35 LINK NE ORN A 1 C LYS A 16 1555 1555 1.38 LINK C LEU A 4 N PHI A 5 1555 1555 1.32 LINK C PHI A 5 N TYR A 6 1555 1555 1.32 LINK C GLU A 8 NE ORN A 9 1555 1555 1.37 LINK C ORN A 9 N LYS A 10 1555 1555 1.36 LINK C THR A 12 N MAA A 13 1555 1555 1.33 LINK C MAA A 13 N THR A 14 1555 1555 1.34 LINK C ORN B 1 N TYR B 2 1555 1555 1.36 LINK NE ORN B 1 C LYS B 16 1555 1555 1.38 LINK C LEU B 4 N PHI B 5 1555 1555 1.33 LINK C PHI B 5 N ATYR B 6 1555 1555 1.32 LINK C PHI B 5 N BTYR B 6 1555 1555 1.33 LINK C GLU B 8 NE ORN B 9 1555 1555 1.37 LINK C ORN B 9 N LYS B 10 1555 1555 1.36 LINK C THR B 12 N MAA B 13 1555 1555 1.34 LINK C MAA B 13 N THR B 14 1555 1555 1.32 LINK C ORN C 1 N ATYR C 2 1555 1555 1.36 LINK C ORN C 1 N BTYR C 2 1555 1555 1.37 LINK NE ORN C 1 C LYS C 16 1555 1555 1.37 LINK C ALEU C 4 N PHI C 5 1555 1555 1.34 LINK C BLEU C 4 N PHI C 5 1555 1555 1.33 LINK C PHI C 5 N TYR C 6 1555 1555 1.33 LINK C GLU C 8 NE ORN C 9 1555 1555 1.37 LINK C ORN C 9 N LYS C 10 1555 1555 1.37 LINK C THR C 12 N MAA C 13 1555 1555 1.33 LINK C MAA C 13 N THR C 14 1555 1555 1.33 LINK C ORN D 1 N ATYR D 2 1555 1555 1.37 LINK C ORN D 1 N BTYR D 2 1555 1555 1.37 LINK NE ORN D 1 C LYS D 16 1555 1555 1.36 LINK C ALEU D 4 N PHI D 5 1555 1555 1.33 LINK C BLEU D 4 N PHI D 5 1555 1555 1.33 LINK C PHI D 5 N TYR D 6 1555 1555 1.33 LINK C GLU D 8 NE ORN D 9 1555 1555 1.37 LINK C ORN D 9 N LYS D 10 1555 1555 1.36 LINK C THR D 12 N MAA D 13 1555 1555 1.33 LINK C MAA D 13 N THR D 14 1555 1555 1.33 LINK C ORN E 1 N TYR E 2 1555 1555 1.37 LINK NE ORN E 1 C LYS E 16 1555 1555 1.37 LINK C LEU E 4 N PHI E 5 1555 1555 1.34 LINK C PHI E 5 N TYR E 6 1555 1555 1.33 LINK C GLU E 8 NE ORN E 9 1555 1555 1.37 LINK C ORN E 9 N LYS E 10 1555 1555 1.37 LINK C THR E 12 N MAA E 13 1555 1555 1.34 LINK C MAA E 13 N THR E 14 1555 1555 1.32 LINK C ORN F 1 N TYR F 2 1555 1555 1.38 LINK NE ORN F 1 C LYS F 16 1555 1555 1.38 LINK C LEU F 4 N PHI F 5 1555 1555 1.34 LINK C PHI F 5 N TYR F 6 1555 1555 1.32 LINK C GLU F 8 NE ORN F 9 1555 1555 1.37 LINK C ORN F 9 N LYS F 10 1555 1555 1.36 LINK C THR F 12 N MAA F 13 1555 1555 1.33 LINK C MAA F 13 N THR F 14 1555 1555 1.32 LINK C ORN G 1 N ATYR G 2 1555 1555 1.36 LINK C ORN G 1 N BTYR G 2 1555 1555 1.37 LINK NE ORN G 1 C LYS G 16 1555 1555 1.36 LINK C ALEU G 4 N PHI G 5 1555 1555 1.32 LINK C BLEU G 4 N PHI G 5 1555 1555 1.33 LINK C PHI G 5 N TYR G 6 1555 1555 1.34 LINK C GLU G 8 NE ORN G 9 1555 1555 1.37 LINK C ORN G 9 N LYS G 10 1555 1555 1.37 LINK C THR G 12 N MAA G 13 1555 1555 1.34 LINK C MAA G 13 N THR G 14 1555 1555 1.32 CRYST1 66.260 66.260 154.630 90.00 90.00 120.00 H 3 2 126 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015092 0.008713 0.000000 0.00000 SCALE2 0.000000 0.017427 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006467 0.00000 HETATM 1 N ORN A 1 9.552 35.025 61.791 1.00 27.99 N1+ ANISOU 1 N ORN A 1 4365 3266 3002 -412 -395 69 N1+ HETATM 2 CA ORN A 1 10.465 33.932 62.092 1.00 22.96 C ANISOU 2 CA ORN A 1 3638 2669 2418 -462 -363 23 C HETATM 3 CB ORN A 1 11.952 34.315 61.836 1.00 26.60 C ANISOU 3 CB ORN A 1 4104 3196 2808 -557 -348 90 C HETATM 4 CG ORN A 1 12.322 34.503 60.372 1.00 33.93 C ANISOU 4 CG ORN A 1 4999 4272 3620 -527 -327 152 C HETATM 5 CD ORN A 1 12.048 33.237 59.533 1.00 35.92 C ANISOU 5 CD ORN A 1 5254 4591 3803 -358 -324 12 C HETATM 6 NE ORN A 1 12.931 32.127 59.908 1.00 25.54 N ANISOU 6 NE ORN A 1 3894 3334 2474 -288 -273 -23 N HETATM 7 C ORN A 1 10.325 33.567 63.554 1.00 20.30 C ANISOU 7 C ORN A 1 3273 2287 2154 -413 -323 42 C HETATM 8 O ORN A 1 10.014 34.387 64.410 1.00 24.14 O ANISOU 8 O ORN A 1 3883 2714 2577 -311 -322 82 O HETATM 9 H2 ORN A 1 8.614 34.885 62.174 1.00 33.58 H1+ HETATM 10 H ORN A 1 9.416 35.175 60.789 1.00 33.58 H1+ HETATM 11 HA ORN A 1 10.131 33.078 61.494 1.00 27.56 H HETATM 12 HB2 ORN A 1 12.594 33.519 62.238 1.00 31.92 H HETATM 13 HB3 ORN A 1 12.153 35.263 62.353 1.00 31.92 H HETATM 14 HG2 ORN A 1 13.388 34.747 60.304 1.00 40.71 H HETATM 15 HG3 ORN A 1 11.740 35.336 59.961 1.00 40.71 H HETATM 16 HD2 ORN A 1 11.010 32.930 59.688 1.00 43.11 H HETATM 17 HD3 ORN A 1 12.225 33.475 58.480 1.00 43.11 H HETATM 18 HE1 ORN A 1 13.849 32.130 59.468 1.00 30.64 H