HEADER HYDROLASE 19-MAR-14 4P5P TITLE X-RAY STRUCTURE OF FRANCISELLA TULARENSIS RAPID ENCYSTMENT PROTEIN 24 TITLE 2 KDA (REP24), GENE PRODUCT OF FTN_0841 COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIJ/PFPI FAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: REP24 (RAPID ENCYSTMENT PROTEIN 24 KDA); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FRANCISELLA TULARENSIS SUBSP. NOVICIDA; SOURCE 3 ORGANISM_TAXID: 401614; SOURCE 4 STRAIN: U112; SOURCE 5 GENE: FTN_0841; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PETBLUEER KEYWDS HYDROLASE, CYSTEINE PROTEASE, VIRULENCE FACTOR, FLAVODOXIN-LIKE EXPDTA X-RAY DIFFRACTION AUTHOR B.W.SEGELKE,G.K.FELD,M.H.CORZETT,N.S.OMATTAGE,A.RASLEY REVDAT 3 27-SEP-23 4P5P 1 REMARK REVDAT 2 22-NOV-17 4P5P 1 SOURCE REMARK REVDAT 1 15-APR-15 4P5P 0 JRNL AUTH B.W.SEGELKE,G.K.FELD,M.H.CORZETT,N.S.OMATTAGE,A.RASLEY JRNL TITL X-RAY STRUCTURE OF FRANCISELLA TULARENSIS RAPID ENCYSTMENT JRNL TITL 2 PROTEIN 24 KDA (REP24), GENE PRODUCT OF FTN_0841 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.380 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 31735 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.150 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.4976 - 3.4243 1.00 3017 156 0.1497 0.1593 REMARK 3 2 3.4243 - 2.7182 1.00 2862 150 0.1575 0.1942 REMARK 3 3 2.7182 - 2.3746 1.00 2822 154 0.1534 0.2137 REMARK 3 4 2.3746 - 2.1575 1.00 2777 131 0.1416 0.2104 REMARK 3 5 2.1575 - 2.0029 1.00 2768 145 0.1354 0.1773 REMARK 3 6 2.0029 - 1.8848 1.00 2762 145 0.1397 0.2159 REMARK 3 7 1.8848 - 1.7904 1.00 2715 162 0.1275 0.2108 REMARK 3 8 1.7904 - 1.7125 1.00 2726 150 0.1365 0.2170 REMARK 3 9 1.7125 - 1.6466 0.99 2711 140 0.1409 0.2077 REMARK 3 10 1.6466 - 1.5897 0.95 2590 140 0.1525 0.2309 REMARK 3 11 1.5897 - 1.5400 0.88 2396 116 0.1621 0.2578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.31 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1846 REMARK 3 ANGLE : 1.114 2525 REMARK 3 CHIRALITY : 0.042 288 REMARK 3 PLANARITY : 0.005 332 REMARK 3 DIHEDRAL : 11.730 692 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P5P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200760. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1159 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33819 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 61.151 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09500 REMARK 200 R SYM (I) : 0.09500 REMARK 200 FOR THE DATA SET : 13.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.20 REMARK 200 R MERGE FOR SHELL (I) : 0.22600 REMARK 200 R SYM FOR SHELL (I) : 0.22600 REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1U9C REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 7.1% (W/V) PEG6000, 0.1M NA-SUCCINATE REMARK 280 PH 5.5, 0.58% HEPTANOYL-N-METHYLGLUCAMIDEMG7, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 122.30267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 61.15133 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 61.15133 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 122.30267 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 61 CD OE1 NE2 REMARK 470 LYS A 80 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CSD A 132 -130.63 65.16 REMARK 500 REMARK 500 REMARK: NULL DBREF 4P5P A 1 225 UNP A0Q664 A0Q664_FRATN 1 225 SEQRES 1 A 225 MET LYS ASN VAL LEU MET VAL THR THR SER HIS ASP VAL SEQRES 2 A 225 MET GLY ASN SER ASN GLU LYS THR GLY LEU TRP LEU SER SEQRES 3 A 225 GLU LEU THR HIS PRO TYR TYR SER ILE ILE ASP LYS ASN SEQRES 4 A 225 ILE ASN ILE ASP ILE VAL SER ILE MET GLY GLY GLU ILE SEQRES 5 A 225 PRO ILE ASP PRO ASN SER VAL ALA GLN GLU ASP TYR TYR SEQRES 6 A 225 ASN ASP LYS PHE LEU ALA ASP ASP ASN LEU LYS ASN ILE SEQRES 7 A 225 MET LYS ASN SER THR SER LEU ARG ASP VAL ASN ILE LYS SEQRES 8 A 225 GLU TYR ASP ALA ILE ILE PHE ALA GLY GLY HIS GLY THR SEQRES 9 A 225 MET TRP ASP PHE PRO ASN ASN ALA ASN ILE HIS SER LYS SEQRES 10 A 225 VAL LEU ASP ILE TYR ALA LYS ASN GLY VAL ILE GLY ALA SEQRES 11 A 225 ILE CSD HIS GLY VAL ALA ALA LEU ILE ASN VAL LYS ASP SEQRES 12 A 225 ASN ASN GLY GLN ASN ILE ILE ARG ASP LYS GLU VAL THR SEQRES 13 A 225 GLY PHE SER ASN ASN GLU GLU LYS ILE VAL GLY LEU THR SEQRES 14 A 225 ASP VAL VAL PRO PHE SER LEU GLU ASP SER LEU VAL GLU SEQRES 15 A 225 ALA GLY ALA LYS TYR SER SER ALA SER GLU TRP GLN SER SEQRES 16 A 225 TYR VAL LYS SER ASP SER LYS ILE ILE THR ALA GLN ASN SEQRES 17 A 225 PRO GLN SER ALA THR ASP PHE ALA LYS ALA ILE LYS GLN SEQRES 18 A 225 SER LEU PHE ASN MODRES 4P5P CSD A 132 CYS MODIFIED RESIDUE HET CSD A 132 11 HETNAM CSD 3-SULFINOALANINE HETSYN CSD S-CYSTEINESULFINIC ACID; S-SULFINOCYSTEINE FORMUL 1 CSD C3 H7 N O4 S FORMUL 2 HOH *217(H2 O) HELIX 1 AA1 LEU A 25 ILE A 36 1 12 HELIX 2 AA2 ASP A 55 VAL A 59 5 5 HELIX 3 AA3 ASP A 63 ASP A 72 1 10 HELIX 4 AA4 ASP A 72 ASN A 81 1 10 HELIX 5 AA5 ARG A 86 VAL A 88 5 3 HELIX 6 AA6 ASN A 89 TYR A 93 5 5 HELIX 7 AA7 GLY A 103 PHE A 108 1 6 HELIX 8 AA8 ASN A 111 LYS A 124 1 14 HELIX 9 AA9 HIS A 133 ILE A 139 5 7 HELIX 10 AB1 SER A 159 VAL A 166 1 8 HELIX 11 AB2 SER A 175 ALA A 183 1 9 HELIX 12 AB3 ASN A 208 GLN A 210 5 3 HELIX 13 AB4 SER A 211 LEU A 223 1 13 SHEET 1 AA1 7 THR A 83 SER A 84 0 SHEET 2 AA1 7 ILE A 40 SER A 46 1 N SER A 46 O THR A 83 SHEET 3 AA1 7 LYS A 2 THR A 8 1 N LYS A 2 O ASN A 41 SHEET 4 AA1 7 ALA A 95 PHE A 98 1 O ILE A 97 N LEU A 5 SHEET 5 AA1 7 VAL A 127 ILE A 131 1 O GLY A 129 N PHE A 98 SHEET 6 AA1 7 ILE A 203 ALA A 206 1 O ILE A 204 N ILE A 128 SHEET 7 AA1 7 VAL A 197 ASP A 200 -1 N LYS A 198 O THR A 205 SHEET 1 AA2 2 GLU A 154 VAL A 155 0 SHEET 2 AA2 2 LYS A 186 TYR A 187 1 O LYS A 186 N VAL A 155 LINK C ILE A 131 N CSD A 132 1555 1555 1.34 LINK C CSD A 132 N HIS A 133 1555 1555 1.33 CRYST1 44.439 44.439 183.454 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022503 0.012992 0.000000 0.00000 SCALE2 0.000000 0.025984 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005451 0.00000