HEADER    DE NOVO PROTEIN                         25-MAR-14   4P6J              
TITLE     CRYSTAL STRUCTURE OF THE COMPUTATIONALLY DESIGNED TRANSMEMBRANE       
TITLE    2 METALLOTRANSPORTER WITH 4-BROMOPHENYLALANINE IN OCTYL GLUCOSIDE      
COMPND    MOL_ID: 1;                                                            
COMPND   2 MOLECULE: COMPUTATIONALLY DESIGNED TRANSPORTER OF ZN(II) AND PROTON; 
COMPND   3 CHAIN: A, B;                                                         
COMPND   4 ENGINEERED: YES                                                      
SOURCE    MOL_ID: 1;                                                            
SOURCE   2 SYNTHETIC: YES;                                                      
SOURCE   3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT;                            
SOURCE   4 ORGANISM_TAXID: 32630                                                
KEYWDS    TRANSMEMBRANE, TRANSPORTER, DE-NOVO DESIGNED, 4-BROMOPHENYLALANINE,   
KEYWDS   2 DE NOVO PROTEIN                                                      
EXPDTA    X-RAY DIFFRACTION                                                     
AUTHOR    N.H.JOH,R.ACHARYA,W.F.DEGRADO                                         
REVDAT   7   27-DEC-23 4P6J    1       REMARK                                   
REVDAT   6   11-DEC-19 4P6J    1       REMARK                                   
REVDAT   5   01-NOV-17 4P6J    1       REMARK                                   
REVDAT   4   20-SEP-17 4P6J    1       SOURCE JRNL   REMARK                     
REVDAT   3   14-JAN-15 4P6J    1       DBREF                                    
REVDAT   2   31-DEC-14 4P6J    1       JRNL                                     
REVDAT   1   24-DEC-14 4P6J    0                                                
JRNL        AUTH   N.H.JOH,T.WANG,M.P.BHATE,R.ACHARYA,Y.WU,M.GRABE,M.HONG,      
JRNL        AUTH 2 G.GRIGORYAN,W.F.DEGRADO                                      
JRNL        TITL   DE NOVO DESIGN OF A TRANSMEMBRANE ZN2+-TRANSPORTING          
JRNL        TITL 2 FOUR-HELIX BUNDLE.                                           
JRNL        REF    SCIENCE                       V. 346  1520 2014              
JRNL        REFN                   ESSN 1095-9203                               
JRNL        PMID   25525248                                                     
JRNL        DOI    10.1126/SCIENCE.1261172                                      
REMARK   2                                                                      
REMARK   2 RESOLUTION.    2.80 ANGSTROMS.                                       
REMARK   3                                                                      
REMARK   3 REFINEMENT.                                                          
REMARK   3   PROGRAM     : PHENIX (PHENIX.REFINE: 1.8.4_1496)                   
REMARK   3   AUTHORS     : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN            
REMARK   3               : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,           
REMARK   3               : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,            
REMARK   3               : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,              
REMARK   3               : REETAL PAI,RANDY READ,JANE RICHARDSON,               
REMARK   3               : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,           
REMARK   3               : NICHOLAS SAUTER,JACOB SMITH,LAURENT                  
REMARK   3               : STORONI,TOM TERWILLIGER,PETER ZWART                  
REMARK   3                                                                      
REMARK   3    REFINEMENT TARGET : ML                                            
REMARK   3                                                                      
REMARK   3  DATA USED IN REFINEMENT.                                            
REMARK   3   RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80                           
REMARK   3   RESOLUTION RANGE LOW  (ANGSTROMS) : 34.79                          
REMARK   3   MIN(FOBS/SIGMA_FOBS)              : 1.620                          
REMARK   3   COMPLETENESS FOR RANGE        (%) : 99.9                           
REMARK   3   NUMBER OF REFLECTIONS             : 2615                           
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT.                                     
REMARK   3   R VALUE     (WORKING + TEST SET) : 0.249                           
REMARK   3   R VALUE            (WORKING SET) : 0.248                           
REMARK   3   FREE R VALUE                     : 0.272                           
REMARK   3   FREE R VALUE TEST SET SIZE   (%) : 4.550                           
REMARK   3   FREE R VALUE TEST SET COUNT      : 119                             
REMARK   3                                                                      
REMARK   3  FIT TO DATA USED IN REFINEMENT (IN BINS).                           
REMARK   3   BIN  RESOLUTION RANGE  COMPL.    NWORK NFREE   RWORK  RFREE        
REMARK   3                                                                      
REMARK   3  BULK SOLVENT MODELLING.                                             
REMARK   3   METHOD USED        : FLAT BULK SOLVENT MODEL                       
REMARK   3   SOLVENT RADIUS     : 1.11                                          
REMARK   3   SHRINKAGE RADIUS   : 0.90                                          
REMARK   3   K_SOL              : NULL                                          
REMARK   3   B_SOL              : NULL                                          
REMARK   3                                                                      
REMARK   3  ERROR ESTIMATES.                                                    
REMARK   3   COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED)     : 0.000            
REMARK   3   PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 32.220           
REMARK   3                                                                      
REMARK   3  B VALUES.                                                           
REMARK   3   FROM WILSON PLOT           (A**2) : NULL                           
REMARK   3   MEAN B VALUE      (OVERALL, A**2) : NULL                           
REMARK   3   OVERALL ANISOTROPIC B VALUE.                                       
REMARK   3    B11 (A**2) : NULL                                                 
REMARK   3    B22 (A**2) : NULL                                                 
REMARK   3    B33 (A**2) : NULL                                                 
REMARK   3    B12 (A**2) : NULL                                                 
REMARK   3    B13 (A**2) : NULL                                                 
REMARK   3    B23 (A**2) : NULL                                                 
REMARK   3                                                                      
REMARK   3  TWINNING INFORMATION.                                               
REMARK   3   FRACTION: NULL                                                     
REMARK   3   OPERATOR: NULL                                                     
REMARK   3                                                                      
REMARK   3  DEVIATIONS FROM IDEAL VALUES.                                       
REMARK   3                 RMSD          COUNT                                  
REMARK   3   BOND      :  0.002            438                                  
REMARK   3   ANGLE     :  0.452            594                                  
REMARK   3   CHIRALITY :  0.020             64                                  
REMARK   3   PLANARITY :  0.001             70                                  
REMARK   3   DIHEDRAL  : 10.337            144                                  
REMARK   3                                                                      
REMARK   3  TLS DETAILS                                                         
REMARK   3   NUMBER OF TLS GROUPS  : NULL                                       
REMARK   3                                                                      
REMARK   3  NCS DETAILS                                                         
REMARK   3   NUMBER OF NCS GROUPS : NULL                                        
REMARK   3                                                                      
REMARK   3  OTHER REFINEMENT REMARKS: NULL                                      
REMARK   4                                                                      
REMARK   4 4P6J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11                         
REMARK 100                                                                      
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-14.                  
REMARK 100 THE DEPOSITION ID IS D_1000200153.                                   
REMARK 200                                                                      
REMARK 200 EXPERIMENTAL DETAILS                                                 
REMARK 200  EXPERIMENT TYPE                : X-RAY DIFFRACTION                  
REMARK 200  DATE OF DATA COLLECTION        : 16-JUN-12                          
REMARK 200  TEMPERATURE           (KELVIN) : 100                                
REMARK 200  PH                             : NULL                               
REMARK 200  NUMBER OF CRYSTALS USED        : NULL                               
REMARK 200                                                                      
REMARK 200  SYNCHROTRON              (Y/N) : Y                                  
REMARK 200  RADIATION SOURCE               : ALS                                
REMARK 200  BEAMLINE                       : 8.3.1                              
REMARK 200  X-RAY GENERATOR MODEL          : NULL                               
REMARK 200  MONOCHROMATIC OR LAUE    (M/L) : M                                  
REMARK 200  WAVELENGTH OR RANGE        (A) : 0.919962                           
REMARK 200  MONOCHROMATOR                  : NULL                               
REMARK 200  OPTICS                         : NULL                               
REMARK 200                                                                      
REMARK 200  DETECTOR TYPE                  : CCD                                
REMARK 200  DETECTOR MANUFACTURER          : ADSC QUANTUM 315R                  
REMARK 200  INTENSITY-INTEGRATION SOFTWARE : NULL                               
REMARK 200  DATA SCALING SOFTWARE          : NULL                               
REMARK 200                                                                      
REMARK 200  NUMBER OF UNIQUE REFLECTIONS   : 2713                               
REMARK 200  RESOLUTION RANGE HIGH      (A) : 2.800                              
REMARK 200  RESOLUTION RANGE LOW       (A) : 50.000                             
REMARK 200  REJECTION CRITERIA  (SIGMA(I)) : NULL                               
REMARK 200                                                                      
REMARK 200 OVERALL.                                                             
REMARK 200  COMPLETENESS FOR RANGE     (%) : 99.9                               
REMARK 200  DATA REDUNDANCY                : 6.200                              
REMARK 200  R MERGE                    (I) : NULL                               
REMARK 200  R SYM                      (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR THE DATA SET  : 10.6000                            
REMARK 200                                                                      
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.                                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL                     
REMARK 200  HIGHEST RESOLUTION SHELL, RANGE LOW  (A) : NULL                     
REMARK 200  COMPLETENESS FOR SHELL     (%) : NULL                               
REMARK 200  DATA REDUNDANCY IN SHELL       : NULL                               
REMARK 200  R MERGE FOR SHELL          (I) : NULL                               
REMARK 200  R SYM FOR SHELL            (I) : NULL                               
REMARK 200  <I/SIGMA(I)> FOR SHELL         : NULL                               
REMARK 200                                                                      
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH                              
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL                         
REMARK 200 SOFTWARE USED: NULL                                                  
REMARK 200 STARTING MODEL: NULL                                                 
REMARK 200                                                                      
REMARK 200 REMARK: NULL                                                         
REMARK 280                                                                      
REMARK 280 CRYSTAL                                                              
REMARK 280 SOLVENT CONTENT, VS   (%): 46.01                                     
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28                     
REMARK 280                                                                      
REMARK 280 CRYSTALLIZATION CONDITIONS: 1:1 (VOL.) MIXTURE OF OG-BOUND ROCKER    
REMARK 280  WITH A PARA-BROMO-PHENYLALANINE AT POSITION 2 (ROCKER BR-PHE2)      
REMARK 280  (1 MM PEPTIDE, 2 MM ZNSO4, 50 MM OG) AND THE WELL SOLUTION (20      
REMARK 280  MM LI2SO4, 50 MM SODIUM CITRATE (PH 5.6), 21 % (W/V) PEG1000),      
REMARK 280  INVERTED ABOVE THE WELL SOLUTION AND INCUBATED AT ROOM              
REMARK 280  TEMPERATURE OVER TWO WEEKS, VAPOR DIFFUSION, HANGING DROP,          
REMARK 280  TEMPERATURE 298K                                                    
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY                                            
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2                        
REMARK 290                                                                      
REMARK 290      SYMOP   SYMMETRY                                                
REMARK 290     NNNMMM   OPERATOR                                                
REMARK 290       1555   X,Y,Z                                                   
REMARK 290       2555   -X,-Y,Z+1/2                                             
REMARK 290       3555   -Y+1/2,X+1/2,Z+3/4                                      
REMARK 290       4555   Y+1/2,-X+1/2,Z+1/4                                      
REMARK 290       5555   -X+1/2,Y+1/2,-Z+3/4                                     
REMARK 290       6555   X+1/2,-Y+1/2,-Z+1/4                                     
REMARK 290       7555   Y,X,-Z                                                  
REMARK 290       8555   -Y,-X,-Z+1/2                                            
REMARK 290                                                                      
REMARK 290     WHERE NNN -> OPERATOR NUMBER                                     
REMARK 290           MMM -> TRANSLATION VECTOR                                  
REMARK 290                                                                      
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS                            
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM             
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY                
REMARK 290 RELATED MOLECULES.                                                   
REMARK 290   SMTRY1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 290   SMTRY1   2 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY2   2  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY3   2  0.000000  0.000000  1.000000       31.99500            
REMARK 290   SMTRY1   3  0.000000 -1.000000  0.000000       20.72500            
REMARK 290   SMTRY2   3  1.000000  0.000000  0.000000       20.72500            
REMARK 290   SMTRY3   3  0.000000  0.000000  1.000000       47.99250            
REMARK 290   SMTRY1   4  0.000000  1.000000  0.000000       20.72500            
REMARK 290   SMTRY2   4 -1.000000  0.000000  0.000000       20.72500            
REMARK 290   SMTRY3   4  0.000000  0.000000  1.000000       15.99750            
REMARK 290   SMTRY1   5 -1.000000  0.000000  0.000000       20.72500            
REMARK 290   SMTRY2   5  0.000000  1.000000  0.000000       20.72500            
REMARK 290   SMTRY3   5  0.000000  0.000000 -1.000000       47.99250            
REMARK 290   SMTRY1   6  1.000000  0.000000  0.000000       20.72500            
REMARK 290   SMTRY2   6  0.000000 -1.000000  0.000000       20.72500            
REMARK 290   SMTRY3   6  0.000000  0.000000 -1.000000       15.99750            
REMARK 290   SMTRY1   7  0.000000  1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   7  1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   7  0.000000  0.000000 -1.000000        0.00000            
REMARK 290   SMTRY1   8  0.000000 -1.000000  0.000000        0.00000            
REMARK 290   SMTRY2   8 -1.000000  0.000000  0.000000        0.00000            
REMARK 290   SMTRY3   8  0.000000  0.000000 -1.000000       31.99500            
REMARK 290                                                                      
REMARK 290 REMARK: NULL                                                         
REMARK 300                                                                      
REMARK 300 BIOMOLECULE: 1                                                       
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM                
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN                  
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON               
REMARK 300 BURIED SURFACE AREA.                                                 
REMARK 300 REMARK: THE BIOLOGICAL UNIT WAS DETERMINED BY COMBINED APPROACH OF   
REMARK 300 COMPUTATIONAL DESIGN, ANALYTICAL ULTRACENTRIFUGATION AND 19F-CODEX   
REMARK 300 VIA SOLID-STATE NMR. AS PER THE AUTHORS THIS TETRAMERIC ASSEMBLY IS  
REMARK 300 REPORTED IN THE SEPARATE PDB FOR SOLID-STATE NMR MODEL ACCOMPANYING  
REMARK 300 THE PAPER CITING THIS PDB.                                           
REMARK 350                                                                      
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN           
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE                
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS          
REMARK 350 GIVEN BELOW.  BOTH NON-CRYSTALLOGRAPHIC AND                          
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.                               
REMARK 350                                                                      
REMARK 350 BIOMOLECULE: 1                                                       
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC                           
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC                    
REMARK 350 SOFTWARE USED: PISA                                                  
REMARK 350 TOTAL BURIED SURFACE AREA: 1600 ANGSTROM**2                          
REMARK 350 SURFACE AREA OF THE COMPLEX: 4280 ANGSTROM**2                        
REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL                        
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B                                  
REMARK 350   BIOMT1   1  1.000000  0.000000  0.000000        0.00000            
REMARK 350   BIOMT2   1  0.000000  1.000000  0.000000        0.00000            
REMARK 350   BIOMT3   1  0.000000  0.000000  1.000000        0.00000            
REMARK 800                                                                      
REMARK 800 SITE                                                                 
REMARK 800 SITE_IDENTIFIER: AC1                                                 
REMARK 800 EVIDENCE_CODE: SOFTWARE                                              
REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 B 101                 
REMARK 900                                                                      
REMARK 900 RELATED ENTRIES                                                      
REMARK 900 RELATED ID: 4P6K   RELATED DB: PDB                                   
REMARK 900 RELATED ID: 4P6L   RELATED DB: PDB                                   
DBREF  4P6J A    1    26  PDB    4P6J     4P6J             1     26             
DBREF  4P6J B    1    26  PDB    4P6J     4P6J             1     26             
SEQRES   1 A   26  TYR 4BF LYS GLU ILE ALA HIS ALA LEU PHE SER ALA LEU          
SEQRES   2 A   26  PHE ALA LEU SER GLU LEU TYR ILE ALA VAL ARG TYR NH2          
SEQRES   1 B   26  TYR 4BF LYS GLU ILE ALA HIS ALA LEU PHE SER ALA LEU          
SEQRES   2 B   26  PHE ALA LEU SER GLU LEU TYR ILE ALA VAL ARG TYR NH2          
HET    4BF  A   2      12                                                       
HET    NH2  A  26       1                                                       
HET    4BF  B   2      12                                                       
HET    NH2  B  26       1                                                       
HET    SO4  B 101       5                                                       
HETNAM     4BF 4-BROMO-L-PHENYLALANINE                                          
HETNAM     NH2 AMINO GROUP                                                      
HETNAM     SO4 SULFATE ION                                                      
HETSYN     4BF P-BROMO-L-PHENYLALANINE                                          
FORMUL   1  4BF    2(C9 H10 BR N O2)                                            
FORMUL   1  NH2    2(H2 N)                                                      
FORMUL   3  SO4    O4 S 2-                                                      
HELIX    1 AA1 TYR A    1  TYR A   25  1                                  25    
HELIX    2 AA2 4BF B    2  TYR B   25  1                                  24    
LINK         C   TYR A   1                 N   4BF A   2     1555   1555  1.33  
LINK         C   4BF A   2                 N   LYS A   3     1555   1555  1.33  
LINK         C   TYR A  25                 N   NH2 A  26     1555   1555  1.33  
LINK         C   TYR B   1                 N   4BF B   2     1555   1555  1.33  
LINK         C   4BF B   2                 N   LYS B   3     1555   1555  1.33  
LINK         C   TYR B  25                 N   NH2 B  26     1555   1555  1.33  
SITE     1 AC1  3 TYR B   1  4BF B   2  LYS B   3                               
CRYST1   41.450   41.450   63.990  90.00  90.00  90.00 P 43 21 2    16          
ORIGX1      1.000000  0.000000  0.000000        0.00000                         
ORIGX2      0.000000  1.000000  0.000000        0.00000                         
ORIGX3      0.000000  0.000000  1.000000        0.00000                         
SCALE1      0.024125  0.000000  0.000000        0.00000                         
SCALE2      0.000000  0.024125  0.000000        0.00000                         
SCALE3      0.000000  0.000000  0.015627        0.00000