HEADER LYASE/LYASE INHIBITOR 25-MAR-14 4P6P TITLE STRUCTURE OF RIBB COMPLEXED WITH INHIBITOR (4PEH) AND METAL IONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3,4-DIHYDROXY-2-BUTANONE 4-PHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DHBP SYNTHASE; COMPND 5 EC: 4.1.99.12; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE SEROTYPE O1; SOURCE 3 ORGANISM_TAXID: 243277; SOURCE 4 STRAIN: ATCC 39315 / EL TOR INABA N16961; SOURCE 5 GENE: RIBB, VC_A1060; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28C KEYWDS RIBB, RIBOFLVAIN, LIGAND, COMPLEX, CRYSTAL, LYASE-LYASE INHIBITOR KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Z.ISLAM,A.KUMAR,S.SINGH,L.SALMON,S.KARTHIKEYAN REVDAT 6 27-SEP-23 4P6P 1 REMARK LINK REVDAT 5 22-NOV-17 4P6P 1 SOURCE JRNL REMARK REVDAT 4 13-MAY-15 4P6P 1 JRNL REVDAT 3 29-APR-15 4P6P 1 AUTHOR REVDAT 2 01-APR-15 4P6P 1 JRNL REVDAT 1 25-MAR-15 4P6P 0 JRNL AUTH Z.ISLAM,A.KUMAR,S.SINGH,L.SALMON,S.KARTHIKEYAN JRNL TITL STRUCTURAL BASIS FOR COMPETITIVE INHIBITION OF JRNL TITL 2 3,4-DIHYDROXY-2-BUTANONE-4-PHOSPHATE SYNTHASE FROM VIBRIO JRNL TITL 3 CHOLERAE. JRNL REF J.BIOL.CHEM. V. 290 11293 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25792735 JRNL DOI 10.1074/JBC.M114.611830 REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1615) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 33363 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.147 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7172 - 4.2502 1.00 2806 146 0.1466 0.1814 REMARK 3 2 4.2502 - 3.3790 1.00 2701 146 0.1345 0.1744 REMARK 3 3 3.3790 - 2.9535 1.00 2658 149 0.1459 0.1869 REMARK 3 4 2.9535 - 2.6842 1.00 2671 144 0.1552 0.2046 REMARK 3 5 2.6842 - 2.4922 1.00 2603 140 0.1531 0.2014 REMARK 3 6 2.4922 - 2.3455 1.00 2671 117 0.1509 0.1920 REMARK 3 7 2.3455 - 2.2282 1.00 2614 153 0.1393 0.1971 REMARK 3 8 2.2282 - 2.1313 1.00 2631 124 0.1360 0.1924 REMARK 3 9 2.1313 - 2.0494 1.00 2622 142 0.1336 0.1818 REMARK 3 10 2.0494 - 1.9787 1.00 2562 150 0.1417 0.1903 REMARK 3 11 1.9787 - 1.9169 1.00 2630 149 0.1446 0.2101 REMARK 3 12 1.9169 - 1.8622 0.97 2501 133 0.1554 0.2306 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 13.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3379 REMARK 3 ANGLE : 1.052 4599 REMARK 3 CHIRALITY : 0.045 551 REMARK 3 PLANARITY : 0.005 611 REMARK 3 DIHEDRAL : 14.028 1285 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P6P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200826. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MIRROR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33367 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.07100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4P6C REMARK 200 REMARK 200 REMARK: ROD SHAPED REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG3350, NA2HPO4, PH 9.1, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.03950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.81700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.40250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 48.81700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.03950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.40250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -335.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 218 REMARK 465 MET B -18 REMARK 465 GLY B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 LEU B 217 REMARK 465 ALA B 218 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS B 104 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 216 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 458 O HOH B 459 4455 2.14 REMARK 500 O HOH A 431 O HOH B 464 1655 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 38 -106.66 -98.77 REMARK 500 CYS A 63 -167.17 -115.65 REMARK 500 THR A 107 -90.61 -106.41 REMARK 500 ARG A 152 52.22 -90.30 REMARK 500 ARG B 38 -109.02 -102.18 REMARK 500 CYS B 63 -168.11 -116.11 REMARK 500 ASN B 87 79.24 -110.18 REMARK 500 THR B 107 -89.73 -114.61 REMARK 500 ARG B 152 48.68 -91.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 39 OE2 REMARK 620 2 HIS A 154 ND1 99.7 REMARK 620 3 RES A 301 O7 97.8 98.0 REMARK 620 4 RES A 301 O3 166.5 87.4 92.4 REMARK 620 5 RES A 301 O2 90.8 158.0 99.7 78.9 REMARK 620 6 HOH A 455 O 81.9 82.0 179.8 87.8 80.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 39 OE1 REMARK 620 2 RES A 301 O2 98.2 REMARK 620 3 RES A 301 O1 175.6 77.5 REMARK 620 4 HOH A 475 O 90.3 90.0 90.3 REMARK 620 5 HOH A 487 O 90.0 99.6 90.2 170.2 REMARK 620 6 HOH B 538 O 92.3 167.3 92.1 82.7 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 77 OD2 REMARK 620 2 HOH A 434 O 104.9 REMARK 620 3 HOH A 437 O 100.3 109.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 469 O REMARK 620 2 GLU B 39 OE2 97.0 REMARK 620 3 RES B 301 O2 167.6 95.4 REMARK 620 4 RES B 301 O1 90.1 172.6 77.5 REMARK 620 5 HOH B 482 O 90.1 90.1 91.2 92.2 REMARK 620 6 HOH B 490 O 82.5 87.5 96.8 91.2 171.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 18 OE2 REMARK 620 2 HOH B 402 O 116.0 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 39 OE1 REMARK 620 2 HIS B 154 ND1 98.4 REMARK 620 3 RES B 301 O7 99.1 99.4 REMARK 620 4 RES B 301 O3 165.7 86.4 93.3 REMARK 620 5 RES B 301 O2 94.7 141.7 113.9 73.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 309 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 191 OE2 REMARK 620 2 HOH B 401 O 84.9 REMARK 620 3 HOH B 460 O 123.0 135.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 307 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 214 OD1 REMARK 620 2 ASP B 214 OD2 58.0 REMARK 620 3 HOH B 438 O 143.2 85.4 REMARK 620 4 HOH B 445 O 85.7 119.4 111.6 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RES A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RES B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 309 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P6C RELATED DB: PDB REMARK 900 RELATED ID: 4P6D RELATED DB: PDB REMARK 900 RELATED ID: 4P77 RELATED DB: PDB DBREF 4P6P A 1 218 UNP Q9KKP2 RIBB_VIBCH 1 218 DBREF 4P6P B 1 218 UNP Q9KKP2 RIBB_VIBCH 1 218 SEQADV 4P6P MET A -18 UNP Q9KKP2 INITIATING METHIONINE SEQADV 4P6P GLY A -17 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P SER A -16 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS A -15 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS A -14 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS A -13 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS A -12 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS A -11 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS A -10 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P SER A -9 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P SER A -8 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P GLY A -7 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P LEU A -6 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P VAL A -5 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P PRO A -4 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P ARG A -3 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P GLY A -2 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P SER A -1 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS A 0 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P MET B -18 UNP Q9KKP2 INITIATING METHIONINE SEQADV 4P6P GLY B -17 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P SER B -16 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS B -15 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS B -14 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS B -13 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS B -12 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS B -11 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS B -10 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P SER B -9 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P SER B -8 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P GLY B -7 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P LEU B -6 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P VAL B -5 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P PRO B -4 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P ARG B -3 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P GLY B -2 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P SER B -1 UNP Q9KKP2 EXPRESSION TAG SEQADV 4P6P HIS B 0 UNP Q9KKP2 EXPRESSION TAG SEQRES 1 A 237 MET GLY SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 A 237 VAL PRO ARG GLY SER HIS MET ASN GLN SER SER LEU LEU SEQRES 3 A 237 ALA GLU PHE GLY ASP PRO ILE THR ARG VAL GLU ASN ALA SEQRES 4 A 237 LEU GLN ALA LEU ARG GLU GLY ARG GLY VAL LEU LEU LEU SEQRES 5 A 237 ASP ASP GLU ASP ARG GLU ASN GLU GLY ASP ILE ILE TYR SEQRES 6 A 237 ALA VAL GLU SER LEU THR THR ALA GLN MET ALA LEU MET SEQRES 7 A 237 ILE ARG GLU CYS SER GLY ILE VAL CYS LEU CYS LEU THR SEQRES 8 A 237 GLU ALA GLN ALA ASP ARG LEU ALA LEU PRO PRO MET VAL SEQRES 9 A 237 VAL ASN ASN ASN SER ALA ASN GLN THR ALA PHE THR VAL SEQRES 10 A 237 SER ILE GLU ALA LYS HIS GLY VAL THR THR GLY VAL SER SEQRES 11 A 237 ALA GLN ASP ARG VAL THR THR ILE LYS THR ALA ALA ASN SEQRES 12 A 237 PRO GLN ALA LYS PRO GLU ASP LEU ALA ARG PRO GLY HIS SEQRES 13 A 237 VAL PHE PRO LEU ARG ALA ARG ALA GLY GLY VAL LEU ALA SEQRES 14 A 237 ARG ARG GLY HIS THR GLU GLY THR VAL ASP LEU MET GLN SEQRES 15 A 237 MET ALA GLY LEU GLN PRO ALA GLY VAL LEU CYS GLU LEU SEQRES 16 A 237 THR ASN PRO ASP GLY SER MET ALA LYS THR PRO GLU ILE SEQRES 17 A 237 ILE GLU PHE GLY LYS LEU HIS ASN MET PRO VAL LEU THR SEQRES 18 A 237 ILE GLU ASP MET VAL GLN TYR ARG ILE GLN PHE ASP LEU SEQRES 19 A 237 LYS LEU ALA SEQRES 1 B 237 MET GLY SER HIS HIS HIS HIS HIS HIS SER SER GLY LEU SEQRES 2 B 237 VAL PRO ARG GLY SER HIS MET ASN GLN SER SER LEU LEU SEQRES 3 B 237 ALA GLU PHE GLY ASP PRO ILE THR ARG VAL GLU ASN ALA SEQRES 4 B 237 LEU GLN ALA LEU ARG GLU GLY ARG GLY VAL LEU LEU LEU SEQRES 5 B 237 ASP ASP GLU ASP ARG GLU ASN GLU GLY ASP ILE ILE TYR SEQRES 6 B 237 ALA VAL GLU SER LEU THR THR ALA GLN MET ALA LEU MET SEQRES 7 B 237 ILE ARG GLU CYS SER GLY ILE VAL CYS LEU CYS LEU THR SEQRES 8 B 237 GLU ALA GLN ALA ASP ARG LEU ALA LEU PRO PRO MET VAL SEQRES 9 B 237 VAL ASN ASN ASN SER ALA ASN GLN THR ALA PHE THR VAL SEQRES 10 B 237 SER ILE GLU ALA LYS HIS GLY VAL THR THR GLY VAL SER SEQRES 11 B 237 ALA GLN ASP ARG VAL THR THR ILE LYS THR ALA ALA ASN SEQRES 12 B 237 PRO GLN ALA LYS PRO GLU ASP LEU ALA ARG PRO GLY HIS SEQRES 13 B 237 VAL PHE PRO LEU ARG ALA ARG ALA GLY GLY VAL LEU ALA SEQRES 14 B 237 ARG ARG GLY HIS THR GLU GLY THR VAL ASP LEU MET GLN SEQRES 15 B 237 MET ALA GLY LEU GLN PRO ALA GLY VAL LEU CYS GLU LEU SEQRES 16 B 237 THR ASN PRO ASP GLY SER MET ALA LYS THR PRO GLU ILE SEQRES 17 B 237 ILE GLU PHE GLY LYS LEU HIS ASN MET PRO VAL LEU THR SEQRES 18 B 237 ILE GLU ASP MET VAL GLN TYR ARG ILE GLN PHE ASP LEU SEQRES 19 B 237 LYS LEU ALA HET RES A 301 14 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET RES B 301 14 HET ZN B 302 1 HET ZN B 303 1 HET ZN B 304 1 HET ZN B 305 1 HET ZN B 306 1 HET ZN B 307 1 HET ZN B 308 1 HET ZN B 309 1 HETNAM RES 4-PHOSPHO-D-ERYTHRONOHYDROXAMIC ACID HETNAM ZN ZINC ION FORMUL 3 RES 2(C4 H10 N O8 P) FORMUL 4 ZN 11(ZN 2+) FORMUL 16 HOH *416(H2 O) HELIX 1 AA1 ASN A 2 ALA A 8 1 7 HELIX 2 AA2 GLU A 9 GLY A 11 5 3 HELIX 3 AA3 ASP A 12 GLU A 26 1 15 HELIX 4 AA4 GLU A 49 LEU A 51 5 3 HELIX 5 AA5 THR A 52 CYS A 63 1 12 HELIX 6 AA6 THR A 72 LEU A 79 1 8 HELIX 7 AA7 SER A 111 ASN A 124 1 14 HELIX 8 AA8 LYS A 128 GLU A 130 5 3 HELIX 9 AA9 GLY A 146 ALA A 150 5 5 HELIX 10 AB1 GLY A 153 GLY A 166 1 14 HELIX 11 AB2 LYS A 185 ASN A 197 1 13 HELIX 12 AB3 ILE A 203 PHE A 213 1 11 HELIX 13 AB4 ASN B 2 LEU B 7 1 6 HELIX 14 AB5 ALA B 8 GLY B 11 5 4 HELIX 15 AB6 ASP B 12 GLU B 26 1 15 HELIX 16 AB7 THR B 52 CYS B 63 1 12 HELIX 17 AB8 THR B 72 LEU B 79 1 8 HELIX 18 AB9 SER B 111 ASN B 124 1 14 HELIX 19 AC1 LYS B 128 GLU B 130 5 3 HELIX 20 AC2 GLY B 146 ALA B 150 5 5 HELIX 21 AC3 GLY B 153 GLY B 166 1 14 HELIX 22 AC4 LYS B 185 HIS B 196 1 12 HELIX 23 AC5 ILE B 203 LEU B 215 1 13 SHEET 1 AA1 7 ILE A 100 ALA A 102 0 SHEET 2 AA1 7 LEU A 132 ARG A 142 -1 O ALA A 133 N GLU A 101 SHEET 3 AA1 7 CYS A 68 LEU A 71 1 N LEU A 71 O LEU A 141 SHEET 4 AA1 7 GLY A 171 GLU A 175 -1 O GLY A 171 N CYS A 70 SHEET 5 AA1 7 GLY A 42 ALA A 47 -1 N TYR A 46 O VAL A 172 SHEET 6 AA1 7 VAL A 30 LEU A 33 -1 N VAL A 30 O ILE A 45 SHEET 7 AA1 7 VAL A 200 THR A 202 1 O LEU A 201 N LEU A 33 SHEET 1 AA2 7 ILE B 100 ALA B 102 0 SHEET 2 AA2 7 LEU B 132 ARG B 142 -1 O ALA B 133 N GLU B 101 SHEET 3 AA2 7 CYS B 68 LEU B 71 1 N LEU B 69 O LEU B 141 SHEET 4 AA2 7 GLY B 171 GLU B 175 -1 O GLY B 171 N CYS B 70 SHEET 5 AA2 7 GLY B 42 ALA B 47 -1 N TYR B 46 O VAL B 172 SHEET 6 AA2 7 VAL B 30 LEU B 33 -1 N VAL B 30 O ILE B 45 SHEET 7 AA2 7 VAL B 200 THR B 202 1 O LEU B 201 N LEU B 33 LINK OE2 GLU A 39 ZN ZN A 302 1555 1555 2.11 LINK OE1 GLU A 39 ZN ZN A 303 1555 1555 1.90 LINK OD2 ASP A 77 ZN ZN A 304 1555 1555 2.15 LINK ND1 HIS A 154 ZN ZN A 302 1555 1555 2.16 LINK O7 RES A 301 ZN ZN A 302 1555 1555 1.94 LINK O3 RES A 301 ZN ZN A 302 1555 1555 2.31 LINK O2 RES A 301 ZN ZN A 302 1555 1555 2.03 LINK O2 RES A 301 ZN ZN A 303 1555 1555 1.91 LINK O1 RES A 301 ZN ZN A 303 1555 1555 2.16 LINK ZN ZN A 302 O HOH A 455 1555 1555 2.70 LINK ZN ZN A 303 O HOH A 475 1555 1555 2.18 LINK ZN ZN A 303 O HOH A 487 1555 1555 2.12 LINK ZN ZN A 303 O HOH B 538 1555 1555 2.12 LINK ZN ZN A 304 O HOH A 434 1555 1555 2.33 LINK ZN ZN A 304 O HOH A 437 1555 3544 2.53 LINK O HOH A 469 ZN ZN B 303 1555 1555 2.01 LINK OE2 GLU B 18 ZN ZN B 304 1555 1555 1.98 LINK OE1 GLU B 39 ZN ZN B 302 1555 1555 2.02 LINK OE2 GLU B 39 ZN ZN B 303 1555 1555 1.97 LINK ND1 HIS B 154 ZN ZN B 302 1555 1555 2.14 LINK OE2 GLU B 191 ZN ZN B 309 1555 1555 2.60 LINK NE2 HIS B 196 ZN ZN B 308 1555 1555 2.13 LINK OD1 ASP B 214 ZN ZN B 307 1555 1555 2.41 LINK OD2 ASP B 214 ZN ZN B 307 1555 1555 2.09 LINK O7 RES B 301 ZN ZN B 302 1555 1555 1.97 LINK O3 RES B 301 ZN ZN B 302 1555 1555 2.31 LINK O2 RES B 301 ZN ZN B 302 1555 1555 1.98 LINK O2 RES B 301 ZN ZN B 303 1555 1555 2.08 LINK O1 RES B 301 ZN ZN B 303 1555 1555 2.21 LINK ZN ZN B 303 O HOH B 482 1555 1555 2.08 LINK ZN ZN B 303 O HOH B 490 1555 1555 2.22 LINK ZN ZN B 304 O HOH B 402 1555 4455 2.08 LINK ZN ZN B 307 O HOH B 438 1555 1555 2.12 LINK ZN ZN B 307 O HOH B 445 1555 1555 2.04 LINK ZN ZN B 309 O HOH B 401 1555 1555 2.31 LINK ZN ZN B 309 O HOH B 460 1555 1555 2.11 CISPEP 1 ARG A 134 PRO A 135 0 -1.18 CISPEP 2 ARG B 134 PRO B 135 0 -1.32 SITE 1 AC1 21 ARG A 38 GLU A 39 ASP A 43 CYS A 68 SITE 2 AC1 21 THR A 94 PHE A 96 ARG A 151 GLY A 153 SITE 3 AC1 21 HIS A 154 THR A 155 LEU A 173 GLU A 175 SITE 4 AC1 21 ZN A 302 ZN A 303 HOH A 455 HOH A 475 SITE 5 AC1 21 HOH A 487 HOH A 497 HOH A 511 HIS B 137 SITE 6 AC1 21 HOH B 538 SITE 1 AC2 5 GLU A 39 HIS A 154 RES A 301 ZN A 303 SITE 2 AC2 5 HOH A 455 SITE 1 AC3 6 GLU A 39 RES A 301 ZN A 302 HOH A 475 SITE 2 AC3 6 HOH A 487 HOH B 538 SITE 1 AC4 3 ASP A 77 HOH A 434 HOH A 437 SITE 1 AC5 21 HIS A 137 HOH A 469 ARG B 38 GLU B 39 SITE 2 AC5 21 ASP B 43 CYS B 68 THR B 94 PHE B 96 SITE 3 AC5 21 ARG B 151 GLY B 153 HIS B 154 THR B 155 SITE 4 AC5 21 LEU B 173 GLU B 175 ZN B 302 ZN B 303 SITE 5 AC5 21 HOH B 477 HOH B 482 HOH B 490 HOH B 509 SITE 6 AC5 21 HOH B 557 SITE 1 AC6 5 GLU B 39 HIS B 154 RES B 301 ZN B 303 SITE 2 AC6 5 HOH B 477 SITE 1 AC7 6 HOH A 469 GLU B 39 RES B 301 ZN B 302 SITE 2 AC7 6 HOH B 482 HOH B 490 SITE 1 AC8 5 GLU B 18 THR B 186 ZN B 305 ZN B 306 SITE 2 AC8 5 HOH B 402 SITE 1 AC9 4 GLN B 3 GLU B 18 THR B 186 ZN B 304 SITE 1 AD1 5 GLU B 18 ASN B 40 LYS B 185 THR B 186 SITE 2 AD1 5 ZN B 304 SITE 1 AD2 4 HIS B 0 ASP B 214 HOH B 438 HOH B 445 SITE 1 AD3 4 GLU B 62 PHE B 192 HIS B 196 HOH B 453 SITE 1 AD4 3 GLU B 191 HOH B 401 HOH B 460 CRYST1 52.079 76.805 97.634 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019202 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013020 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010242 0.00000