HEADER LUMINESCENT PROTEIN 26-MAR-14 4P76 TITLE CELLULAR RESPONSE TO A CRYSTAL-FORMING PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOCONVERTIBLE FLUORESCENT PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FAVIA FAVUS; SOURCE 3 ORGANISM_COMMON: HEAD CORAL; SOURCE 4 ORGANISM_TAXID: 102203; SOURCE 5 GENE: KIKGR; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS LUMINESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.TSUTSUI,Y.JINNO,K.SHODA,A.TOMITA,M.MATSUDA,E.YAMASHITA,H.KATAYAMA, AUTHOR 2 A.NAKAGAWA,A.MIYAWAKI REVDAT 3 15-NOV-23 4P76 1 LINK ATOM REVDAT 2 22-JAN-20 4P76 1 SOURCE JRNL REMARK REVDAT 1 29-APR-15 4P76 0 JRNL AUTH H.TSUTSUI,Y.JINNO,K.SHODA,A.TOMITA,M.MATSUDA,E.YAMASHITA, JRNL AUTH 2 H.KATAYAMA,A.NAKAGAWA,A.MIYAWAKI JRNL TITL A DIFFRACTION-QUALITY PROTEIN CRYSTAL PROCESSED AS AN JRNL TITL 2 AUTOPHAGIC CARGO JRNL REF MOL.CELL V. 58 186 2015 JRNL REFN ISSN 1097-2765 JRNL PMID 25773597 JRNL DOI 10.1016/J.MOLCEL.2015.02.007 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 11052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.700 REMARK 3 FREE R VALUE TEST SET COUNT : 539 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 REFLECTION IN BIN (WORKING SET) : 805 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 35 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3565 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.67 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.19000 REMARK 3 B22 (A**2) : 2.42000 REMARK 3 B33 (A**2) : -2.23000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.421 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.280 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.092 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3657 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4940 ; 1.767 ; 1.963 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 6.518 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 173 ;31.234 ;24.335 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 622 ;18.166 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;18.779 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 514 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2815 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1768 ; 1.026 ; 1.795 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2204 ; 1.774 ; 2.687 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1889 ; 1.760 ; 1.899 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5355 ; 4.383 ;14.642 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 2 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 114 3 REMARK 3 1 B 3 B 114 3 REMARK 3 2 A 118 A 225 3 REMARK 3 2 B 118 B 224 3 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 881 ; 0.08 ; 5.00 REMARK 3 TIGHT THERMAL 1 A (A**2): 866 ; 1.52 ; 0.50 REMARK 3 LOOSE THERMAL 1 A (A**2): 881 ; 2.02 ; 10.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4P76 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 10-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200803. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11052 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.16100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 0.47000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.92 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, TEMPERATURE 310K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 24.93100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.21300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.93100 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.21300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 84.42600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LYS A 228 REMARK 465 MET B 1 REMARK 465 VAL B 2 REMARK 465 ARG B 225 REMARK 465 LEU B 226 REMARK 465 ALA B 227 REMARK 465 LYS B 228 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N VAL A 2 O HOH A 301 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 92 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 123 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 138 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 138 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 153 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 153 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 178 NE - CZ - NH1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 178 NE - CZ - NH2 ANGL. DEV. = -5.1 DEGREES REMARK 500 ARG B 92 NE - CZ - NH1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG B 92 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG B 123 NE - CZ - NH1 ANGL. DEV. = -4.2 DEGREES REMARK 500 ARG B 123 NE - CZ - NH2 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 138 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG B 138 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG B 153 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG B 153 NE - CZ - NH2 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 178 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG B 178 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 115 171.20 -57.25 REMARK 500 SER A 203 136.41 -174.54 REMARK 500 SER B 203 140.35 -177.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA B 301 DBREF 4P76 A 3 228 UNP Q53UG8 Q53UG8_FAVFA 2 227 DBREF 4P76 B 3 228 UNP Q53UG8 Q53UG8_FAVFA 2 227 SEQADV 4P76 MET A 1 UNP Q53UG8 CLONING ARTIFACT SEQADV 4P76 VAL A 2 UNP Q53UG8 CLONING ARTIFACT SEQADV 4P76 CR8 A 65 UNP Q53UG8 HIS 62 CHROMOPHORE SEQADV 4P76 CR8 A 65 UNP Q53UG8 TYR 63 CHROMOPHORE SEQADV 4P76 CR8 A 65 UNP Q53UG8 GLY 64 CHROMOPHORE SEQADV 4P76 SER A 198 UNP Q53UG8 GLN 197 ENGINEERED MUTATION SEQADV 4P76 MET B 1 UNP Q53UG8 CLONING ARTIFACT SEQADV 4P76 VAL B 2 UNP Q53UG8 CLONING ARTIFACT SEQADV 4P76 CR8 B 65 UNP Q53UG8 HIS 62 CHROMOPHORE SEQADV 4P76 CR8 B 65 UNP Q53UG8 TYR 63 CHROMOPHORE SEQADV 4P76 CR8 B 65 UNP Q53UG8 GLY 64 CHROMOPHORE SEQADV 4P76 SER B 198 UNP Q53UG8 GLN 197 ENGINEERED MUTATION SEQRES 1 A 226 MET VAL SER VAL ILE THR SER GLU MET LYS ILE GLU LEU SEQRES 2 A 226 ARG MET GLU GLY ALA VAL ASN GLY HIS LYS PHE VAL ILE SEQRES 3 A 226 THR GLY LYS GLY SER GLY GLN PRO PHE GLU GLY ILE GLN SEQRES 4 A 226 ASN VAL ASP LEU THR VAL ILE GLU GLY GLY PRO LEU PRO SEQRES 5 A 226 PHE ALA PHE ASP ILE LEU THR THR ALA PHE CR8 ASN ARG SEQRES 6 A 226 VAL PHE VAL GLU TYR PRO GLU GLU ILE VAL ASP TYR PHE SEQRES 7 A 226 LYS GLN SER PHE PRO GLU GLY TYR SER TRP GLU ARG SER SEQRES 8 A 226 MET SER TYR GLU ASP GLY GLY ILE CYS LEU ALA THR ASN SEQRES 9 A 226 ASN ILE THR MET LYS LYS ASP GLY SER ASN CYS PHE VAL SEQRES 10 A 226 ASN GLU ILE ARG PHE ASP GLY VAL ASN PHE PRO ALA ASN SEQRES 11 A 226 GLY PRO VAL MET GLN ARG LYS THR VAL LYS TRP GLU PRO SEQRES 12 A 226 SER THR GLU LYS MET TYR VAL ARG ASP GLY VAL LEU LYS SEQRES 13 A 226 GLY ASP VAL ASN MET ALA LEU LEU LEU GLN GLY GLY GLY SEQRES 14 A 226 HIS TYR ARG CYS ASP PHE ARG THR THR TYR LYS ALA LYS SEQRES 15 A 226 LYS VAL VAL GLN LEU PRO ASP TYR HIS PHE VAL ASP HIS SEQRES 16 A 226 SER MET GLU ILE THR SER HIS ASP LYS ASP TYR ASN LYS SEQRES 17 A 226 VAL LYS LEU TYR GLU HIS ALA LYS ALA HIS SER GLY LEU SEQRES 18 A 226 PRO ARG LEU ALA LYS SEQRES 1 B 226 MET VAL SER VAL ILE THR SER GLU MET LYS ILE GLU LEU SEQRES 2 B 226 ARG MET GLU GLY ALA VAL ASN GLY HIS LYS PHE VAL ILE SEQRES 3 B 226 THR GLY LYS GLY SER GLY GLN PRO PHE GLU GLY ILE GLN SEQRES 4 B 226 ASN VAL ASP LEU THR VAL ILE GLU GLY GLY PRO LEU PRO SEQRES 5 B 226 PHE ALA PHE ASP ILE LEU THR THR ALA PHE CR8 ASN ARG SEQRES 6 B 226 VAL PHE VAL GLU TYR PRO GLU GLU ILE VAL ASP TYR PHE SEQRES 7 B 226 LYS GLN SER PHE PRO GLU GLY TYR SER TRP GLU ARG SER SEQRES 8 B 226 MET SER TYR GLU ASP GLY GLY ILE CYS LEU ALA THR ASN SEQRES 9 B 226 ASN ILE THR MET LYS LYS ASP GLY SER ASN CYS PHE VAL SEQRES 10 B 226 ASN GLU ILE ARG PHE ASP GLY VAL ASN PHE PRO ALA ASN SEQRES 11 B 226 GLY PRO VAL MET GLN ARG LYS THR VAL LYS TRP GLU PRO SEQRES 12 B 226 SER THR GLU LYS MET TYR VAL ARG ASP GLY VAL LEU LYS SEQRES 13 B 226 GLY ASP VAL ASN MET ALA LEU LEU LEU GLN GLY GLY GLY SEQRES 14 B 226 HIS TYR ARG CYS ASP PHE ARG THR THR TYR LYS ALA LYS SEQRES 15 B 226 LYS VAL VAL GLN LEU PRO ASP TYR HIS PHE VAL ASP HIS SEQRES 16 B 226 SER MET GLU ILE THR SER HIS ASP LYS ASP TYR ASN LYS SEQRES 17 B 226 VAL LYS LEU TYR GLU HIS ALA LYS ALA HIS SER GLY LEU SEQRES 18 B 226 PRO ARG LEU ALA LYS MODRES 4P76 CR8 A 65 HIS CHROMOPHORE MODRES 4P76 CR8 A 65 TYR CHROMOPHORE MODRES 4P76 CR8 A 65 GLY CHROMOPHORE MODRES 4P76 CR8 B 65 HIS CHROMOPHORE MODRES 4P76 CR8 B 65 TYR CHROMOPHORE MODRES 4P76 CR8 B 65 GLY CHROMOPHORE HET CR8 A 65 25 HET CR8 B 65 25 HET NA B 301 1 HETNAM CR8 2-[1-AMINO-2-(1H-IMIDAZOL-5-YL)ETHYL]-1- HETNAM 2 CR8 (CARBOXYMETHYL)-4-[(4-OXOCYCLOHEXA-2,5-DIEN-1- HETNAM 3 CR8 YLIDENE)METHYL]-1H-IMIDAZOL-5-OLATE HETNAM NA SODIUM ION HETSYN CR8 CHROMOPHORE (HIS-TYR-GLY) FORMUL 1 CR8 2(C17 H16 N5 O4 1-) FORMUL 3 NA NA 1+ FORMUL 4 HOH *43(H2 O) HELIX 1 AA1 ALA A 54 THR A 59 5 6 HELIX 2 AA2 PHE B 55 THR B 60 1 6 SHEET 1 AA113 THR A 140 TRP A 143 0 SHEET 2 AA113 VAL A 156 LEU A 167 -1 O LEU A 166 N VAL A 141 SHEET 3 AA113 HIS A 172 ALA A 183 -1 O CYS A 175 N MET A 163 SHEET 4 AA113 TYR A 88 TYR A 96 -1 N SER A 89 O LYS A 182 SHEET 5 AA113 ILE A 101 MET A 110 -1 O ALA A 104 N ARG A 92 SHEET 6 AA113 CYS A 117 VAL A 127 -1 O VAL A 119 N THR A 109 SHEET 7 AA113 MET A 9 VAL A 19 1 N ARG A 14 O ILE A 122 SHEET 8 AA113 HIS A 22 GLY A 32 -1 O ILE A 26 N MET A 15 SHEET 9 AA113 ILE A 38 GLU A 47 -1 O ASN A 40 N SER A 31 SHEET 10 AA113 LYS A 210 HIS A 220 -1 O VAL A 211 N LEU A 43 SHEET 11 AA113 HIS A 193 HIS A 204 -1 N SER A 203 O LYS A 212 SHEET 12 AA113 SER A 146 ARG A 153 -1 N SER A 146 O HIS A 197 SHEET 13 AA113 VAL A 156 LEU A 167 -1 O LYS A 158 N TYR A 151 SHEET 1 AA213 THR B 140 TRP B 143 0 SHEET 2 AA213 VAL B 156 LEU B 167 -1 O LEU B 166 N VAL B 141 SHEET 3 AA213 HIS B 172 ALA B 183 -1 O CYS B 175 N MET B 163 SHEET 4 AA213 TYR B 88 TYR B 96 -1 N SER B 89 O LYS B 182 SHEET 5 AA213 ILE B 101 MET B 110 -1 O ALA B 104 N ARG B 92 SHEET 6 AA213 CYS B 117 VAL B 127 -1 O VAL B 119 N THR B 109 SHEET 7 AA213 MET B 9 VAL B 19 1 N ARG B 14 O ILE B 122 SHEET 8 AA213 HIS B 22 GLY B 32 -1 O ILE B 26 N MET B 15 SHEET 9 AA213 ILE B 38 GLU B 47 -1 O ASN B 40 N SER B 31 SHEET 10 AA213 LYS B 210 HIS B 220 -1 O VAL B 211 N LEU B 43 SHEET 11 AA213 HIS B 193 HIS B 204 -1 N SER B 203 O LYS B 212 SHEET 12 AA213 SER B 146 ARG B 153 -1 N MET B 150 O HIS B 193 SHEET 13 AA213 VAL B 156 LEU B 167 -1 O LYS B 158 N TYR B 151 LINK C PHE A 62 N1 CR8 A 65 1555 1555 1.34 LINK C3 CR8 A 65 N ASN A 66 1555 1555 1.32 LINK C PHE B 62 N1 CR8 B 65 1555 1555 1.34 LINK C3 CR8 B 65 N ASN B 66 1555 1555 1.33 LINK OH TYR B 214 NA NA B 301 1555 1555 3.14 CISPEP 1 GLY A 49 PRO A 50 0 -8.10 CISPEP 2 PHE A 84 PRO A 85 0 11.07 CISPEP 3 GLY B 49 PRO B 50 0 -7.19 CISPEP 4 PHE B 84 PRO B 85 0 8.00 SITE 1 AC1 3 VAL B 4 ILE B 38 TYR B 214 CRYST1 49.862 84.426 118.218 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011845 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008459 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.988041 -0.154171 0.002376 6.35911 1 MTRIX2 2 -0.154153 0.988027 0.006332 0.24793 1 MTRIX3 2 -0.003324 0.005890 -0.999977 59.15041 1