HEADER TRANSFERASE 27-MAR-14 4P7G TITLE RAT APO-COMT, PHOSPHATE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATECHOL O-METHYLTRANSFERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: UNP RESIDUES 44-264; COMPND 5 EC: 2.1.1.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: COMT; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS METHYLTRANSFERASE, NEUROTRANSMITTER DEGRADATION, TRANSFERASE, KEYWDS 2 ALTERNATIVE INITIATION, CATECHOLAMINE METABOLISM, CELL MEMBRANE, KEYWDS 3 METAL-BINDING, PHOSPHOPROTEIN, S-ADENOSYL-L-METHIONINE, SIGNAL- KEYWDS 4 ANCHOR, TRANSMEMBRANE ANCHOR, ENZYME MECHANISM, CONFORMATIONAL KEYWDS 5 CHANGE EXPDTA X-RAY DIFFRACTION AUTHOR A.EHLER,J.BENZ,D.SCHLATTER,M.G.RUDOLPH REVDAT 3 27-DEC-23 4P7G 1 SOURCE REMARK LINK REVDAT 2 13-AUG-14 4P7G 1 JRNL REVDAT 1 18-JUN-14 4P7G 0 JRNL AUTH A.EHLER,J.BENZ,D.SCHLATTER,M.G.RUDOLPH JRNL TITL MAPPING THE CONFORMATIONAL SPACE ACCESSIBLE TO JRNL TITL 2 CATECHOL-O-METHYLTRANSFERASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 2163 2014 JRNL REFN ESSN 1399-0047 JRNL PMID 25084335 JRNL DOI 10.1107/S1399004714012917 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.4 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 3 NUMBER OF REFLECTIONS : 36241 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.980 REMARK 3 FREE R VALUE TEST SET COUNT : 1804 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 18 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.65 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.58 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2225 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.4464 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2106 REMARK 3 BIN R VALUE (WORKING SET) : 0.4453 REMARK 3 BIN FREE R VALUE : 0.4651 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.35 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 119 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6725 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 96 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 70.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19450 REMARK 3 B22 (A**2) : 0.19450 REMARK 3 B33 (A**2) : -0.38900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.486 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.503 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.281 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.482 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.281 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.930 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.901 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6868 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 9308 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2411 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 184 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 971 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6868 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 875 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7764 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.11 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.66 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.68 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): -22.0947 -0.7463 18.1479 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.1549 REMARK 3 T33: -0.3152 T12: 0.2716 REMARK 3 T13: -0.0430 T23: -0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.1343 L22: 2.7307 REMARK 3 L33: 2.4070 L12: -0.2345 REMARK 3 L13: 0.5023 L23: -1.4004 REMARK 3 S TENSOR REMARK 3 S11: -0.1685 S12: -0.1681 S13: -0.0189 REMARK 3 S21: 0.2554 S22: 0.0619 S23: -0.2753 REMARK 3 S31: -0.2551 S32: -0.2526 S33: 0.1066 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|* } REMARK 3 ORIGIN FOR THE GROUP (A): -22.8719 -5.1599 -14.3233 REMARK 3 T TENSOR REMARK 3 T11: -0.0679 T22: 0.2505 REMARK 3 T33: -0.3433 T12: 0.1656 REMARK 3 T13: -0.0652 T23: -0.0213 REMARK 3 L TENSOR REMARK 3 L11: 2.2340 L22: 1.4800 REMARK 3 L33: 2.9664 L12: -0.4286 REMARK 3 L13: -0.9821 L23: -0.1500 REMARK 3 S TENSOR REMARK 3 S11: 0.0418 S12: 0.1229 S13: -0.1351 REMARK 3 S21: -0.2376 S22: -0.1004 S23: -0.0900 REMARK 3 S31: -0.2305 S32: -0.1522 S33: 0.0586 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: { C|* } REMARK 3 ORIGIN FOR THE GROUP (A): -0.8309 -23.4528 47.0985 REMARK 3 T TENSOR REMARK 3 T11: 0.0125 T22: 0.1689 REMARK 3 T33: -0.3367 T12: 0.1089 REMARK 3 T13: 0.0049 T23: 0.0473 REMARK 3 L TENSOR REMARK 3 L11: 2.3754 L22: 1.3667 REMARK 3 L33: 2.9313 L12: -0.2144 REMARK 3 L13: 0.9561 L23: -0.3505 REMARK 3 S TENSOR REMARK 3 S11: 0.1717 S12: -0.0133 S13: 0.0309 REMARK 3 S21: -0.0438 S22: -0.0782 S23: 0.0140 REMARK 3 S31: 0.0457 S32: 0.0089 S33: -0.0935 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: { D|* } REMARK 3 ORIGIN FOR THE GROUP (A): -5.7217 -13.4611 78.7115 REMARK 3 T TENSOR REMARK 3 T11: 0.0396 T22: 0.2198 REMARK 3 T33: -0.4032 T12: -0.0983 REMARK 3 T13: 0.0401 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.3674 L22: 4.0358 REMARK 3 L33: 2.3598 L12: 1.1172 REMARK 3 L13: -0.2132 L23: 1.7529 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: -0.2432 S13: 0.2929 REMARK 3 S21: 0.3908 S22: -0.0394 S23: 0.1181 REMARK 3 S31: -0.0062 S32: 0.1227 S33: -0.0319 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P7G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36241 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 48.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 4.900 REMARK 200 R MERGE (I) : 0.23468 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.1347 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.64460 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.536 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SEE MANUSCRIPT, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 262.29200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.14600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.14600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 262.29200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 44 REMARK 465 PRO A 258 REMARK 465 SER A 259 REMARK 465 SER A 260 REMARK 465 PRO A 261 REMARK 465 ASP A 262 REMARK 465 LYS A 263 REMARK 465 SER A 264 REMARK 465 MET B 44 REMARK 465 SER B 259 REMARK 465 SER B 260 REMARK 465 PRO B 261 REMARK 465 ASP B 262 REMARK 465 LYS B 263 REMARK 465 SER B 264 REMARK 465 MET C 44 REMARK 465 SER C 259 REMARK 465 SER C 260 REMARK 465 PRO C 261 REMARK 465 ASP C 262 REMARK 465 LYS C 263 REMARK 465 SER C 264 REMARK 465 MET D 44 REMARK 465 SER D 259 REMARK 465 SER D 260 REMARK 465 PRO D 261 REMARK 465 ASP D 262 REMARK 465 LYS D 263 REMARK 465 SER D 264 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 83 -70.34 -48.74 REMARK 500 ASN A 84 61.66 -152.20 REMARK 500 ALA A 88 -81.23 -80.39 REMARK 500 TYR A 111 -79.64 -126.63 REMARK 500 ASP A 176 -66.83 -93.20 REMARK 500 HIS A 185 -48.31 57.62 REMARK 500 LEU A 241 -134.67 57.03 REMARK 500 ASN B 84 55.68 -155.32 REMARK 500 ALA B 88 -71.55 -82.15 REMARK 500 TYR B 111 -78.89 -125.65 REMARK 500 ASP B 176 -65.95 -92.59 REMARK 500 HIS B 185 -54.56 67.20 REMARK 500 VAL B 214 49.22 -97.53 REMARK 500 LEU B 241 -134.18 54.83 REMARK 500 ASN C 84 55.96 -152.22 REMARK 500 TYR C 111 -78.67 -124.64 REMARK 500 ASP C 176 -65.51 -92.30 REMARK 500 HIS C 185 -52.46 66.87 REMARK 500 LEU C 241 -133.25 58.21 REMARK 500 MET D 83 -70.06 -39.80 REMARK 500 ASN D 84 55.54 -154.13 REMARK 500 TYR D 111 -77.68 -126.21 REMARK 500 ASP D 176 -66.14 -93.14 REMARK 500 HIS D 185 -54.83 66.52 REMARK 500 LEU D 241 -133.56 56.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 226 O REMARK 620 2 ARG A 227 O 81.7 REMARK 620 3 SER A 229 O 82.9 103.6 REMARK 620 4 PHE A 232 O 96.6 166.4 89.5 REMARK 620 5 GLU B 242 O 157.0 78.0 91.4 105.6 REMARK 620 6 HOH B 419 O 85.6 73.2 168.5 93.2 98.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 301 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 242 O REMARK 620 2 HOH A 428 O 108.5 REMARK 620 3 VAL B 226 O 158.9 90.1 REMARK 620 4 ARG B 227 O 84.7 92.0 84.8 REMARK 620 5 SER B 229 O 85.1 164.6 77.9 96.4 REMARK 620 6 PHE B 232 O 109.4 82.4 82.3 165.8 86.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 C 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 D 300 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P7K RELATED DB: PDB REMARK 900 RELATED ID: 4P7F RELATED DB: PDB REMARK 900 RELATED ID: 4P7J RELATED DB: PDB DBREF 4P7G A 44 264 UNP P22734 COMT_RAT 44 264 DBREF 4P7G B 44 264 UNP P22734 COMT_RAT 44 264 DBREF 4P7G C 44 264 UNP P22734 COMT_RAT 44 264 DBREF 4P7G D 44 264 UNP P22734 COMT_RAT 44 264 SEQRES 1 A 221 MET GLY ASP THR LYS GLU GLN ARG ILE LEU ARG TYR VAL SEQRES 2 A 221 GLN GLN ASN ALA LYS PRO GLY ASP PRO GLN SER VAL LEU SEQRES 3 A 221 GLU ALA ILE ASP THR TYR CYS THR GLN LYS GLU TRP ALA SEQRES 4 A 221 MET ASN VAL GLY ASP ALA LYS GLY GLN ILE MET ASP ALA SEQRES 5 A 221 VAL ILE ARG GLU TYR SER PRO SER LEU VAL LEU GLU LEU SEQRES 6 A 221 GLY ALA TYR CYS GLY TYR SER ALA VAL ARG MET ALA ARG SEQRES 7 A 221 LEU LEU GLN PRO GLY ALA ARG LEU LEU THR MET GLU MET SEQRES 8 A 221 ASN PRO ASP TYR ALA ALA ILE THR GLN GLN MET LEU ASN SEQRES 9 A 221 PHE ALA GLY LEU GLN ASP LYS VAL THR ILE LEU ASN GLY SEQRES 10 A 221 ALA SER GLN ASP LEU ILE PRO GLN LEU LYS LYS LYS TYR SEQRES 11 A 221 ASP VAL ASP THR LEU ASP MET VAL PHE LEU ASP HIS TRP SEQRES 12 A 221 LYS ASP ARG TYR LEU PRO ASP THR LEU LEU LEU GLU LYS SEQRES 13 A 221 CYS GLY LEU LEU ARG LYS GLY THR VAL LEU LEU ALA ASP SEQRES 14 A 221 ASN VAL ILE VAL PRO GLY THR PRO ASP PHE LEU ALA TYR SEQRES 15 A 221 VAL ARG GLY SER SER SER PHE GLU CYS THR HIS TYR SER SEQRES 16 A 221 SER TYR LEU GLU TYR MET LYS VAL VAL ASP GLY LEU GLU SEQRES 17 A 221 LYS ALA ILE TYR GLN GLY PRO SER SER PRO ASP LYS SER SEQRES 1 B 221 MET GLY ASP THR LYS GLU GLN ARG ILE LEU ARG TYR VAL SEQRES 2 B 221 GLN GLN ASN ALA LYS PRO GLY ASP PRO GLN SER VAL LEU SEQRES 3 B 221 GLU ALA ILE ASP THR TYR CYS THR GLN LYS GLU TRP ALA SEQRES 4 B 221 MET ASN VAL GLY ASP ALA LYS GLY GLN ILE MET ASP ALA SEQRES 5 B 221 VAL ILE ARG GLU TYR SER PRO SER LEU VAL LEU GLU LEU SEQRES 6 B 221 GLY ALA TYR CYS GLY TYR SER ALA VAL ARG MET ALA ARG SEQRES 7 B 221 LEU LEU GLN PRO GLY ALA ARG LEU LEU THR MET GLU MET SEQRES 8 B 221 ASN PRO ASP TYR ALA ALA ILE THR GLN GLN MET LEU ASN SEQRES 9 B 221 PHE ALA GLY LEU GLN ASP LYS VAL THR ILE LEU ASN GLY SEQRES 10 B 221 ALA SER GLN ASP LEU ILE PRO GLN LEU LYS LYS LYS TYR SEQRES 11 B 221 ASP VAL ASP THR LEU ASP MET VAL PHE LEU ASP HIS TRP SEQRES 12 B 221 LYS ASP ARG TYR LEU PRO ASP THR LEU LEU LEU GLU LYS SEQRES 13 B 221 CYS GLY LEU LEU ARG LYS GLY THR VAL LEU LEU ALA ASP SEQRES 14 B 221 ASN VAL ILE VAL PRO GLY THR PRO ASP PHE LEU ALA TYR SEQRES 15 B 221 VAL ARG GLY SER SER SER PHE GLU CYS THR HIS TYR SER SEQRES 16 B 221 SER TYR LEU GLU TYR MET LYS VAL VAL ASP GLY LEU GLU SEQRES 17 B 221 LYS ALA ILE TYR GLN GLY PRO SER SER PRO ASP LYS SER SEQRES 1 C 221 MET GLY ASP THR LYS GLU GLN ARG ILE LEU ARG TYR VAL SEQRES 2 C 221 GLN GLN ASN ALA LYS PRO GLY ASP PRO GLN SER VAL LEU SEQRES 3 C 221 GLU ALA ILE ASP THR TYR CYS THR GLN LYS GLU TRP ALA SEQRES 4 C 221 MET ASN VAL GLY ASP ALA LYS GLY GLN ILE MET ASP ALA SEQRES 5 C 221 VAL ILE ARG GLU TYR SER PRO SER LEU VAL LEU GLU LEU SEQRES 6 C 221 GLY ALA TYR CYS GLY TYR SER ALA VAL ARG MET ALA ARG SEQRES 7 C 221 LEU LEU GLN PRO GLY ALA ARG LEU LEU THR MET GLU MET SEQRES 8 C 221 ASN PRO ASP TYR ALA ALA ILE THR GLN GLN MET LEU ASN SEQRES 9 C 221 PHE ALA GLY LEU GLN ASP LYS VAL THR ILE LEU ASN GLY SEQRES 10 C 221 ALA SER GLN ASP LEU ILE PRO GLN LEU LYS LYS LYS TYR SEQRES 11 C 221 ASP VAL ASP THR LEU ASP MET VAL PHE LEU ASP HIS TRP SEQRES 12 C 221 LYS ASP ARG TYR LEU PRO ASP THR LEU LEU LEU GLU LYS SEQRES 13 C 221 CYS GLY LEU LEU ARG LYS GLY THR VAL LEU LEU ALA ASP SEQRES 14 C 221 ASN VAL ILE VAL PRO GLY THR PRO ASP PHE LEU ALA TYR SEQRES 15 C 221 VAL ARG GLY SER SER SER PHE GLU CYS THR HIS TYR SER SEQRES 16 C 221 SER TYR LEU GLU TYR MET LYS VAL VAL ASP GLY LEU GLU SEQRES 17 C 221 LYS ALA ILE TYR GLN GLY PRO SER SER PRO ASP LYS SER SEQRES 1 D 221 MET GLY ASP THR LYS GLU GLN ARG ILE LEU ARG TYR VAL SEQRES 2 D 221 GLN GLN ASN ALA LYS PRO GLY ASP PRO GLN SER VAL LEU SEQRES 3 D 221 GLU ALA ILE ASP THR TYR CYS THR GLN LYS GLU TRP ALA SEQRES 4 D 221 MET ASN VAL GLY ASP ALA LYS GLY GLN ILE MET ASP ALA SEQRES 5 D 221 VAL ILE ARG GLU TYR SER PRO SER LEU VAL LEU GLU LEU SEQRES 6 D 221 GLY ALA TYR CYS GLY TYR SER ALA VAL ARG MET ALA ARG SEQRES 7 D 221 LEU LEU GLN PRO GLY ALA ARG LEU LEU THR MET GLU MET SEQRES 8 D 221 ASN PRO ASP TYR ALA ALA ILE THR GLN GLN MET LEU ASN SEQRES 9 D 221 PHE ALA GLY LEU GLN ASP LYS VAL THR ILE LEU ASN GLY SEQRES 10 D 221 ALA SER GLN ASP LEU ILE PRO GLN LEU LYS LYS LYS TYR SEQRES 11 D 221 ASP VAL ASP THR LEU ASP MET VAL PHE LEU ASP HIS TRP SEQRES 12 D 221 LYS ASP ARG TYR LEU PRO ASP THR LEU LEU LEU GLU LYS SEQRES 13 D 221 CYS GLY LEU LEU ARG LYS GLY THR VAL LEU LEU ALA ASP SEQRES 14 D 221 ASN VAL ILE VAL PRO GLY THR PRO ASP PHE LEU ALA TYR SEQRES 15 D 221 VAL ARG GLY SER SER SER PHE GLU CYS THR HIS TYR SER SEQRES 16 D 221 SER TYR LEU GLU TYR MET LYS VAL VAL ASP GLY LEU GLU SEQRES 17 D 221 LYS ALA ILE TYR GLN GLY PRO SER SER PRO ASP LYS SER HET PO4 A 300 5 HET K A 301 1 HET PO4 B 300 5 HET K B 301 1 HET PO4 C 300 5 HET PO4 D 300 5 HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION FORMUL 5 PO4 4(O4 P 3-) FORMUL 6 K 2(K 1+) FORMUL 11 HOH *96(H2 O) HELIX 1 AA1 THR A 47 ALA A 60 1 14 HELIX 2 AA2 ASP A 64 LYS A 79 1 16 HELIX 3 AA3 ALA A 88 SER A 101 1 14 HELIX 4 AA4 GLY A 113 ARG A 121 1 9 HELIX 5 AA5 ASN A 135 GLY A 150 1 16 HELIX 6 AA6 ALA A 161 ILE A 166 1 6 HELIX 7 AA7 GLN A 168 TYR A 173 1 6 HELIX 8 AA8 TRP A 186 ASP A 188 5 3 HELIX 9 AA9 ARG A 189 CYS A 200 1 12 HELIX 10 AB1 THR A 219 SER A 229 1 11 HELIX 11 AB2 THR B 47 ALA B 60 1 14 HELIX 12 AB3 ASP B 64 LYS B 79 1 16 HELIX 13 AB4 ALA B 88 SER B 101 1 14 HELIX 14 AB5 GLY B 113 ARG B 121 1 9 HELIX 15 AB6 ASN B 135 GLY B 150 1 16 HELIX 16 AB7 ALA B 161 ILE B 166 1 6 HELIX 17 AB8 GLN B 168 TYR B 173 1 6 HELIX 18 AB9 TRP B 186 ASP B 188 5 3 HELIX 19 AC1 ARG B 189 CYS B 200 1 12 HELIX 20 AC2 ASP B 221 SER B 229 1 9 HELIX 21 AC3 THR C 47 ALA C 60 1 14 HELIX 22 AC4 ASP C 64 LYS C 79 1 16 HELIX 23 AC5 ASP C 87 SER C 101 1 15 HELIX 24 AC6 GLY C 113 ARG C 121 1 9 HELIX 25 AC7 ASN C 135 GLY C 150 1 16 HELIX 26 AC8 ALA C 161 ILE C 166 1 6 HELIX 27 AC9 GLN C 168 TYR C 173 1 6 HELIX 28 AD1 TRP C 186 ASP C 188 5 3 HELIX 29 AD2 ARG C 189 CYS C 200 1 12 HELIX 30 AD3 ASP C 221 SER C 229 1 9 HELIX 31 AD4 THR D 47 ALA D 60 1 14 HELIX 32 AD5 ASP D 64 LYS D 79 1 16 HELIX 33 AD6 ASN D 84 LYS D 89 1 6 HELIX 34 AD7 LYS D 89 SER D 101 1 13 HELIX 35 AD8 GLY D 113 ARG D 121 1 9 HELIX 36 AD9 ASN D 135 GLY D 150 1 16 HELIX 37 AE1 ALA D 161 ILE D 166 1 6 HELIX 38 AE2 GLN D 168 TYR D 173 1 6 HELIX 39 AE3 TRP D 186 ASP D 188 5 3 HELIX 40 AE4 ARG D 189 CYS D 200 1 12 HELIX 41 AE5 ASP D 221 SER D 229 1 9 SHEET 1 AA114 VAL A 155 ASN A 159 0 SHEET 2 AA114 ARG A 128 GLU A 133 1 N THR A 131 O LEU A 158 SHEET 3 AA114 LEU A 104 LEU A 108 1 N GLU A 107 O LEU A 130 SHEET 4 AA114 MET A 180 LEU A 183 1 O PHE A 182 N LEU A 108 SHEET 5 AA114 VAL A 208 ASP A 212 1 O ASP A 212 N LEU A 183 SHEET 6 AA114 ASP A 248 TYR A 255 -1 O ALA A 253 N LEU A 209 SHEET 7 AA114 PHE A 232 LEU A 241 -1 N SER A 239 O ASP A 248 SHEET 8 AA114 PHE B 232 LEU B 241 -1 O HIS B 236 N SER A 238 SHEET 9 AA114 ASP B 248 TYR B 255 -1 O ASP B 248 N SER B 239 SHEET 10 AA114 VAL B 208 ALA B 211 -1 N LEU B 209 O ALA B 253 SHEET 11 AA114 MET B 180 LEU B 183 1 N LEU B 183 O LEU B 210 SHEET 12 AA114 LEU B 104 LEU B 108 1 N LEU B 108 O PHE B 182 SHEET 13 AA114 ARG B 128 GLU B 133 1 O LEU B 130 N GLU B 107 SHEET 14 AA114 VAL B 155 ASN B 159 1 O LEU B 158 N THR B 131 SHEET 1 AA214 VAL C 155 ASN C 159 0 SHEET 2 AA214 ARG C 128 GLU C 133 1 N THR C 131 O LEU C 158 SHEET 3 AA214 LEU C 104 LEU C 108 1 N GLU C 107 O LEU C 130 SHEET 4 AA214 MET C 180 LEU C 183 1 O PHE C 182 N LEU C 108 SHEET 5 AA214 VAL C 208 ALA C 211 1 O LEU C 210 N LEU C 183 SHEET 6 AA214 ASP C 248 TYR C 255 -1 O ALA C 253 N LEU C 209 SHEET 7 AA214 PHE C 232 LEU C 241 -1 N TYR C 237 O LEU C 250 SHEET 8 AA214 PHE D 232 LEU D 241 -1 O SER D 238 N HIS C 236 SHEET 9 AA214 ASP D 248 TYR D 255 -1 O ASP D 248 N SER D 239 SHEET 10 AA214 VAL D 208 ALA D 211 -1 N LEU D 209 O ALA D 253 SHEET 11 AA214 MET D 180 LEU D 183 1 N LEU D 183 O LEU D 210 SHEET 12 AA214 LEU D 104 LEU D 108 1 N LEU D 108 O PHE D 182 SHEET 13 AA214 ARG D 128 GLU D 133 1 O LEU D 130 N GLU D 107 SHEET 14 AA214 VAL D 155 ASN D 159 1 O LEU D 158 N THR D 131 LINK O VAL A 226 K K A 301 1555 1555 2.59 LINK O ARG A 227 K K A 301 1555 1555 2.69 LINK O SER A 229 K K A 301 1555 1555 2.37 LINK O PHE A 232 K K A 301 1555 1555 2.52 LINK O GLU A 242 K K B 301 1555 1555 2.65 LINK K K A 301 O GLU B 242 1555 1555 2.79 LINK K K A 301 O HOH B 419 1555 1555 2.68 LINK O HOH A 428 K K B 301 1555 1555 2.92 LINK O VAL B 226 K K B 301 1555 1555 2.80 LINK O ARG B 227 K K B 301 1555 1555 2.69 LINK O SER B 229 K K B 301 1555 1555 2.42 LINK O PHE B 232 K K B 301 1555 1555 2.44 CISPEP 1 VAL A 216 PRO A 217 0 3.29 CISPEP 2 VAL D 216 PRO D 217 0 6.40 SITE 1 AC1 8 LYS A 89 ALA A 110 TYR A 111 CYS A 112 SITE 2 AC1 8 GLY A 113 TYR A 114 SER A 115 ASP A 184 SITE 1 AC2 6 VAL A 226 ARG A 227 SER A 229 PHE A 232 SITE 2 AC2 6 GLU B 242 HOH B 419 SITE 1 AC3 8 LYS B 89 TYR B 111 CYS B 112 GLY B 113 SITE 2 AC3 8 TYR B 114 SER B 115 ASP B 184 HOH B 405 SITE 1 AC4 6 GLU A 242 HOH A 428 VAL B 226 ARG B 227 SITE 2 AC4 6 SER B 229 PHE B 232 SITE 1 AC5 9 LYS C 89 TYR C 111 CYS C 112 GLY C 113 SITE 2 AC5 9 TYR C 114 SER C 115 ASP C 184 HOH C 403 SITE 3 AC5 9 HOH C 423 SITE 1 AC6 8 LYS D 89 ALA D 110 TYR D 111 CYS D 112 SITE 2 AC6 8 GLY D 113 TYR D 114 SER D 115 ASP D 184 CRYST1 71.600 71.600 393.438 90.00 90.00 120.00 P 32 2 1 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013966 0.008064 0.000000 0.00000 SCALE2 0.000000 0.016127 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002542 0.00000