HEADER HYDROLASE 27-MAR-14 4P7O TITLE STRUCTURE OF ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN, P1 CRYSTAL FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE N-DEACETYLASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 310-672; COMPND 5 SYNONYM: PGAB, POLY-BETA-1,6-GLCNAC N-DEACETYLASE; COMPND 6 EC: 3.5.1.-; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: PGAB, YCDR, B1023, JW5142; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS BETA ALPHA BARREL, CARBOHYDRATE BINDING, GLYCOSYL HYDROLASE FOLD, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.J.LITTLE,G.LI,C.ING,B.DIFRANCESCO,N.C.BAMFORD,H.ROBINSON,M.NITZ, AUTHOR 2 R.POMES,P.L.HOWELL REVDAT 6 27-SEP-23 4P7O 1 REMARK REVDAT 5 08-JAN-20 4P7O 1 REMARK REVDAT 4 22-NOV-17 4P7O 1 SOURCE JRNL REMARK REVDAT 3 01-OCT-14 4P7O 1 JRNL REVDAT 2 23-JUL-14 4P7O 1 JRNL REVDAT 1 02-JUL-14 4P7O 0 JRNL AUTH D.J.LITTLE,G.LI,C.ING,B.R.DIFRANCESCO,N.C.BAMFORD, JRNL AUTH 2 H.ROBINSON,M.NITZ,R.POMES,P.L.HOWELL JRNL TITL MODIFICATION AND PERIPLASMIC TRANSLOCATION OF THE BIOFILM JRNL TITL 2 EXOPOLYSACCHARIDE POLY-BETA-1,6-N-ACETYL-D-GLUCOSAMINE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 11013 2014 JRNL REFN ESSN 1091-6490 JRNL PMID 24994902 JRNL DOI 10.1073/PNAS.1406388111 REMARK 2 REMARK 2 RESOLUTION. 1.48 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: DEV_1615) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.48 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.86 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.960 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.1 REMARK 3 NUMBER OF REFLECTIONS : 115509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.720 REMARK 3 FREE R VALUE TEST SET COUNT : 1866 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.8810 - 4.4763 0.99 8545 151 0.1980 0.1863 REMARK 3 2 4.4763 - 3.5536 0.95 8235 141 0.1875 0.2170 REMARK 3 3 3.5536 - 3.1046 0.96 8298 147 0.2049 0.2556 REMARK 3 4 3.1046 - 2.8208 0.96 8239 145 0.2158 0.2326 REMARK 3 5 2.8208 - 2.6186 0.96 8214 145 0.2186 0.2361 REMARK 3 6 2.6186 - 2.4643 0.96 8288 141 0.2161 0.3142 REMARK 3 7 2.4643 - 2.3409 0.96 8273 144 0.2203 0.2386 REMARK 3 8 2.3409 - 2.2390 0.81 7107 128 0.2712 0.3220 REMARK 3 9 2.2390 - 2.1528 0.82 6984 121 0.2277 0.2684 REMARK 3 10 2.1528 - 2.0785 0.95 8132 143 0.2160 0.2333 REMARK 3 11 2.0785 - 2.0135 0.93 8085 142 0.2478 0.2949 REMARK 3 12 2.0135 - 1.9560 0.95 8238 147 0.2147 0.2817 REMARK 3 13 1.9560 - 1.9045 0.82 7038 124 0.3188 0.4182 REMARK 3 14 1.9045 - 1.8580 0.86 7477 128 0.2294 0.1771 REMARK 3 15 1.8580 - 1.8158 0.94 8093 144 0.2113 0.2772 REMARK 3 16 1.8158 - 1.7771 0.94 8126 141 0.2134 0.2591 REMARK 3 17 1.7771 - 1.7416 0.94 7916 138 0.2160 0.2476 REMARK 3 18 1.7416 - 1.7087 0.94 8232 146 0.2194 0.2561 REMARK 3 19 1.7087 - 1.6782 0.94 8009 138 0.2216 0.2757 REMARK 3 20 1.6782 - 1.6497 0.94 8148 142 0.2186 0.2459 REMARK 3 21 1.6497 - 1.6231 0.93 7981 141 0.2205 0.2402 REMARK 3 22 1.6231 - 1.5982 0.93 8069 144 0.2240 0.2885 REMARK 3 23 1.5982 - 1.5746 0.93 8064 140 0.2328 0.2914 REMARK 3 24 1.5746 - 1.5525 0.93 7948 138 0.2407 0.2926 REMARK 3 25 1.5525 - 1.5315 0.92 7983 142 0.2529 0.3012 REMARK 3 26 1.5315 - 1.5116 0.91 7865 136 0.3101 0.3470 REMARK 3 27 1.5116 - 1.4927 0.91 7831 139 0.2706 0.3167 REMARK 3 28 1.4927 - 1.4747 0.81 7029 126 0.2923 0.3516 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.680 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 5763 REMARK 3 ANGLE : 1.075 7847 REMARK 3 CHIRALITY : 0.078 835 REMARK 3 PLANARITY : 0.005 1020 REMARK 3 DIHEDRAL : 13.402 2089 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 312 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1874 -10.7648 66.8470 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.1178 REMARK 3 T33: 0.0949 T12: -0.0063 REMARK 3 T13: 0.0000 T23: 0.0132 REMARK 3 L TENSOR REMARK 3 L11: 0.7798 L22: 0.8735 REMARK 3 L33: 1.3358 L12: 0.0560 REMARK 3 L13: -0.4480 L23: 0.0106 REMARK 3 S TENSOR REMARK 3 S11: -0.0392 S12: 0.0209 S13: -0.0204 REMARK 3 S21: 0.0592 S22: 0.0325 S23: 0.0368 REMARK 3 S31: 0.0117 S32: -0.1155 S33: 0.0191 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 412 THROUGH 477 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.6048 5.2755 58.6109 REMARK 3 T TENSOR REMARK 3 T11: 0.1753 T22: 0.1169 REMARK 3 T33: 0.1200 T12: -0.0017 REMARK 3 T13: -0.0160 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.2292 L22: 0.9612 REMARK 3 L33: 3.2273 L12: 0.1333 REMARK 3 L13: -0.0679 L23: -0.8385 REMARK 3 S TENSOR REMARK 3 S11: -0.0052 S12: -0.0334 S13: 0.0266 REMARK 3 S21: 0.0420 S22: -0.0164 S23: 0.0291 REMARK 3 S31: -0.2134 S32: -0.0677 S33: 0.0100 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 478 THROUGH 499 ) REMARK 3 ORIGIN FOR THE GROUP (A): 6.0467 15.4474 47.6037 REMARK 3 T TENSOR REMARK 3 T11: 0.2957 T22: 0.1167 REMARK 3 T33: 0.2168 T12: -0.0401 REMARK 3 T13: -0.0304 T23: 0.0238 REMARK 3 L TENSOR REMARK 3 L11: 1.9167 L22: 2.9158 REMARK 3 L33: 3.4510 L12: 0.1286 REMARK 3 L13: -1.3128 L23: 0.4503 REMARK 3 S TENSOR REMARK 3 S11: 0.0605 S12: 0.0225 S13: 0.2883 REMARK 3 S21: -0.1003 S22: 0.0627 S23: -0.3086 REMARK 3 S31: -0.8359 S32: 0.1153 S33: -0.1083 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 500 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.8158 2.7906 57.9977 REMARK 3 T TENSOR REMARK 3 T11: 0.1360 T22: 0.1176 REMARK 3 T33: 0.1238 T12: -0.0127 REMARK 3 T13: -0.0318 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.3758 L22: 3.9614 REMARK 3 L33: 4.5641 L12: 1.2501 REMARK 3 L13: -1.7452 L23: -4.1783 REMARK 3 S TENSOR REMARK 3 S11: 0.0372 S12: -0.0888 S13: 0.0499 REMARK 3 S21: -0.0225 S22: -0.1331 S23: -0.1491 REMARK 3 S31: 0.0145 S32: 0.4160 S33: 0.1266 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 530 THROUGH 636 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.4342 -14.3940 49.1215 REMARK 3 T TENSOR REMARK 3 T11: 0.1806 T22: 0.0948 REMARK 3 T33: 0.0915 T12: 0.0106 REMARK 3 T13: -0.0038 T23: 0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.9352 L22: 1.2372 REMARK 3 L33: 1.6204 L12: 0.4597 REMARK 3 L13: 0.2129 L23: 0.5212 REMARK 3 S TENSOR REMARK 3 S11: -0.0441 S12: 0.0316 S13: -0.0048 REMARK 3 S21: -0.0356 S22: 0.0150 S23: 0.0100 REMARK 3 S31: 0.0800 S32: -0.0040 S33: 0.0100 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 637 THROUGH 669 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.8228 -25.7760 57.0830 REMARK 3 T TENSOR REMARK 3 T11: 0.2876 T22: 0.1134 REMARK 3 T33: 0.1096 T12: -0.0143 REMARK 3 T13: -0.0007 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 2.4237 L22: 2.0443 REMARK 3 L33: 1.0815 L12: -0.6505 REMARK 3 L13: -0.9175 L23: 0.6180 REMARK 3 S TENSOR REMARK 3 S11: -0.0827 S12: 0.0284 S13: -0.1963 REMARK 3 S21: 0.1229 S22: -0.0084 S23: 0.0674 REMARK 3 S31: 0.2254 S32: -0.0598 S33: 0.0524 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 312 THROUGH 411 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8160 12.9457 7.2973 REMARK 3 T TENSOR REMARK 3 T11: 0.1698 T22: 0.1171 REMARK 3 T33: 0.0924 T12: -0.0044 REMARK 3 T13: -0.0079 T23: 0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.1260 L22: 1.2779 REMARK 3 L33: 1.2001 L12: -0.1205 REMARK 3 L13: 0.5350 L23: -0.2176 REMARK 3 S TENSOR REMARK 3 S11: -0.0476 S12: 0.0345 S13: 0.0760 REMARK 3 S21: -0.0671 S22: 0.0399 S23: 0.0345 REMARK 3 S31: -0.0594 S32: -0.1186 S33: 0.0120 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 412 THROUGH 529 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.5592 -4.1911 18.5802 REMARK 3 T TENSOR REMARK 3 T11: 0.1836 T22: 0.1137 REMARK 3 T33: 0.1301 T12: 0.0004 REMARK 3 T13: 0.0123 T23: 0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.3710 L22: 1.3127 REMARK 3 L33: 2.7086 L12: -0.0816 REMARK 3 L13: 0.4077 L23: -1.2088 REMARK 3 S TENSOR REMARK 3 S11: 0.0234 S12: 0.0099 S13: -0.0320 REMARK 3 S21: -0.0428 S22: -0.0284 S23: -0.0853 REMARK 3 S31: 0.1407 S32: 0.0385 S33: 0.0026 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 530 THROUGH 669 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.0494 19.5047 23.5204 REMARK 3 T TENSOR REMARK 3 T11: 0.1912 T22: 0.0966 REMARK 3 T33: 0.0989 T12: -0.0219 REMARK 3 T13: -0.0057 T23: 0.0056 REMARK 3 L TENSOR REMARK 3 L11: 0.7679 L22: 1.5008 REMARK 3 L33: 1.0821 L12: -0.4229 REMARK 3 L13: 0.1308 L23: 0.1794 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: -0.0027 S13: 0.0779 REMARK 3 S21: -0.0058 S22: -0.0207 S23: -0.0250 REMARK 3 S31: -0.1413 S32: -0.0233 S33: 0.0493 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P7O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 126137 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.4 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.29900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4P7L REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG5000 MME, 0.2 M AMMONIUM REMARK 280 SULFATE, 0.1 M MES, PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 306 REMARK 465 SER A 307 REMARK 465 HIS A 308 REMARK 465 MET A 309 REMARK 465 GLU A 310 REMARK 465 LYS A 311 REMARK 465 LYS A 424 REMARK 465 ALA A 425 REMARK 465 GLN A 426 REMARK 465 ILE A 427 REMARK 465 HIS A 428 REMARK 465 PRO A 429 REMARK 465 GLU A 430 REMARK 465 GLN A 431 REMARK 465 GLN A 614 REMARK 465 LYS A 615 REMARK 465 ASN A 616 REMARK 465 GLY A 617 REMARK 465 GLN A 618 REMARK 465 LYS A 670 REMARK 465 ASN A 671 REMARK 465 ASP A 672 REMARK 465 GLY B 306 REMARK 465 SER B 307 REMARK 465 HIS B 308 REMARK 465 MET B 309 REMARK 465 GLU B 310 REMARK 465 LYS B 311 REMARK 465 LYS B 424 REMARK 465 ALA B 425 REMARK 465 GLN B 426 REMARK 465 ILE B 427 REMARK 465 HIS B 428 REMARK 465 PRO B 429 REMARK 465 GLU B 430 REMARK 465 GLN B 431 REMARK 465 LYS B 615 REMARK 465 ASN B 616 REMARK 465 GLY B 617 REMARK 465 GLN B 618 REMARK 465 LYS B 670 REMARK 465 ASN B 671 REMARK 465 ASP B 672 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 501 CG CD OE1 OE2 REMARK 470 LYS A 504 CG CD CE NZ REMARK 470 LYS A 562 CG CD CE NZ REMARK 470 LYS A 601 CG CD CE NZ REMARK 470 LYS A 640 CG CD CE NZ REMARK 470 LYS B 562 CG CD CE NZ REMARK 470 GLN B 599 CG CD OE1 NE2 REMARK 470 LYS B 601 CG CD CE NZ REMARK 470 GLN B 614 CG CD OE1 NE2 REMARK 470 HIS B 619 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 466 O HOH A 949 2.03 REMARK 500 O HOH A 761 O HOH A 780 2.12 REMARK 500 OE1 GLN A 611 O HOH A 897 2.13 REMARK 500 O HOH B 949 O HOH B 1065 2.14 REMARK 500 O HOH A 796 O HOH A 1047 2.14 REMARK 500 O HOH B 1039 O HOH B 1064 2.15 REMARK 500 O HOH B 790 O HOH B 960 2.16 REMARK 500 O HOH B 764 O HOH B 978 2.18 REMARK 500 O HOH A 949 O HOH A 1089 2.18 REMARK 500 O HOH A 974 O HOH A 1036 2.19 REMARK 500 O HOH B 951 O HOH B 1030 2.19 REMARK 500 OD2 ASP A 358 O HOH A 952 2.19 REMARK 500 O HOH A 992 O HOH A 1064 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 358 68.74 -160.23 REMARK 500 ASP A 409 126.57 -36.99 REMARK 500 PHE A 663 -43.41 -134.71 REMARK 500 ASP B 358 57.31 -156.35 REMARK 500 ASP B 409 126.96 -38.97 REMARK 500 PHE B 663 -40.75 -136.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 921 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH A 969 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH A 983 DISTANCE = 7.22 ANGSTROMS REMARK 525 HOH A 987 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A 991 DISTANCE = 7.99 ANGSTROMS REMARK 525 HOH A1013 DISTANCE = 6.80 ANGSTROMS REMARK 525 HOH A1042 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A1058 DISTANCE = 6.26 ANGSTROMS REMARK 525 HOH A1061 DISTANCE = 6.98 ANGSTROMS REMARK 525 HOH A1062 DISTANCE = 6.59 ANGSTROMS REMARK 525 HOH A1065 DISTANCE = 6.35 ANGSTROMS REMARK 525 HOH A1079 DISTANCE = 6.54 ANGSTROMS REMARK 525 HOH A1084 DISTANCE = 5.90 ANGSTROMS REMARK 525 HOH A1093 DISTANCE = 7.51 ANGSTROMS REMARK 525 HOH A1100 DISTANCE = 6.92 ANGSTROMS REMARK 525 HOH A1101 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B 983 DISTANCE = 6.36 ANGSTROMS REMARK 525 HOH B 984 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B1000 DISTANCE = 5.88 ANGSTROMS REMARK 525 HOH B1001 DISTANCE = 6.03 ANGSTROMS REMARK 525 HOH B1021 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH B1024 DISTANCE = 6.46 ANGSTROMS REMARK 525 HOH B1043 DISTANCE = 5.85 ANGSTROMS REMARK 525 HOH B1077 DISTANCE = 6.52 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P7L RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN APO FORM, P212121 CRYSTAL REMARK 900 FORM REMARK 900 RELATED ID: 4P7N RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH GLUCOSAMINE REMARK 900 RELATED ID: 4P7Q RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH N- REMARK 900 ACETYLGLUCOSAMINE REMARK 900 RELATED ID: 4P7R RELATED DB: PDB REMARK 900 ESCHERICHIA COLI PGAB C-TERMINAL DOMAIN IN COMPLEX WITH A POLY- REMARK 900 ALPHA-1,6-N-ACETYL-D-GLUCOSAMINE (PNAG) HEXAMER DBREF 4P7O A 310 672 UNP P75906 PGAB_ECOLI 310 672 DBREF 4P7O B 310 672 UNP P75906 PGAB_ECOLI 310 672 SEQADV 4P7O GLY A 306 UNP P75906 EXPRESSION TAG SEQADV 4P7O SER A 307 UNP P75906 EXPRESSION TAG SEQADV 4P7O HIS A 308 UNP P75906 EXPRESSION TAG SEQADV 4P7O MET A 309 UNP P75906 EXPRESSION TAG SEQADV 4P7O GLY B 306 UNP P75906 EXPRESSION TAG SEQADV 4P7O SER B 307 UNP P75906 EXPRESSION TAG SEQADV 4P7O HIS B 308 UNP P75906 EXPRESSION TAG SEQADV 4P7O MET B 309 UNP P75906 EXPRESSION TAG SEQRES 1 A 367 GLY SER HIS MET GLU LYS SER PRO GLN ARG ILE MET HIS SEQRES 2 A 367 ILE ASP LEU ASP TYR VAL TYR ASP GLU ASN LEU GLN GLN SEQRES 3 A 367 MET ASP ARG ASN ILE ASP VAL LEU ILE GLN ARG VAL LYS SEQRES 4 A 367 ASP MET GLN ILE SER THR VAL TYR LEU GLN ALA PHE ALA SEQRES 5 A 367 ASP PRO ASP GLY ASP GLY LEU VAL LYS GLU VAL TRP PHE SEQRES 6 A 367 PRO ASN ARG LEU LEU PRO MET LYS ALA ASP ILE PHE SER SEQRES 7 A 367 ARG VAL ALA TRP GLN LEU ARG THR ARG SER GLY VAL ASN SEQRES 8 A 367 ILE TYR ALA TRP MET PRO VAL LEU SER TRP ASP LEU ASP SEQRES 9 A 367 PRO THR LEU THR ARG VAL LYS TYR LEU PRO THR GLY GLU SEQRES 10 A 367 LYS LYS ALA GLN ILE HIS PRO GLU GLN TYR HIS ARG LEU SEQRES 11 A 367 SER PRO PHE ASP ASP ARG VAL ARG ALA GLN VAL GLY MET SEQRES 12 A 367 LEU TYR GLU ASP LEU ALA GLY HIS ALA ALA PHE ASP GLY SEQRES 13 A 367 ILE LEU PHE HIS ASP ASP ALA LEU LEU SER ASP TYR GLU SEQRES 14 A 367 ASP ALA SER ALA PRO ALA ILE THR ALA TYR GLN GLN ALA SEQRES 15 A 367 GLY PHE SER GLY SER LEU SER GLU ILE ARG GLN ASN PRO SEQRES 16 A 367 GLU GLN PHE LYS GLN TRP ALA ARG PHE LYS SER ARG ALA SEQRES 17 A 367 LEU THR ASP PHE THR LEU GLU LEU SER ALA ARG VAL LYS SEQRES 18 A 367 ALA ILE ARG GLY PRO HIS ILE LYS THR ALA ARG ASN ILE SEQRES 19 A 367 PHE ALA LEU PRO VAL ILE GLN PRO GLU SER GLU ALA TRP SEQRES 20 A 367 PHE ALA GLN ASN TYR ALA ASP PHE LEU LYS SER TYR ASP SEQRES 21 A 367 TRP THR ALA ILE MET ALA MET PRO TYR LEU GLU GLY VAL SEQRES 22 A 367 ALA GLU LYS SER ALA ASP GLN TRP LEU ILE GLN LEU THR SEQRES 23 A 367 ASN GLN ILE LYS ASN ILE PRO GLN ALA LYS ASP LYS SER SEQRES 24 A 367 ILE LEU GLU LEU GLN ALA GLN ASN TRP GLN LYS ASN GLY SEQRES 25 A 367 GLN HIS GLN ALA ILE SER SER GLN GLN LEU ALA HIS TRP SEQRES 26 A 367 MET SER LEU LEU GLN LEU ASN GLY VAL LYS ASN TYR GLY SEQRES 27 A 367 TYR TYR PRO ASP ASN PHE LEU HIS ASN GLN PRO GLU ILE SEQRES 28 A 367 ASP LEU ILE ARG PRO GLU PHE SER THR ALA TRP TYR PRO SEQRES 29 A 367 LYS ASN ASP SEQRES 1 B 367 GLY SER HIS MET GLU LYS SER PRO GLN ARG ILE MET HIS SEQRES 2 B 367 ILE ASP LEU ASP TYR VAL TYR ASP GLU ASN LEU GLN GLN SEQRES 3 B 367 MET ASP ARG ASN ILE ASP VAL LEU ILE GLN ARG VAL LYS SEQRES 4 B 367 ASP MET GLN ILE SER THR VAL TYR LEU GLN ALA PHE ALA SEQRES 5 B 367 ASP PRO ASP GLY ASP GLY LEU VAL LYS GLU VAL TRP PHE SEQRES 6 B 367 PRO ASN ARG LEU LEU PRO MET LYS ALA ASP ILE PHE SER SEQRES 7 B 367 ARG VAL ALA TRP GLN LEU ARG THR ARG SER GLY VAL ASN SEQRES 8 B 367 ILE TYR ALA TRP MET PRO VAL LEU SER TRP ASP LEU ASP SEQRES 9 B 367 PRO THR LEU THR ARG VAL LYS TYR LEU PRO THR GLY GLU SEQRES 10 B 367 LYS LYS ALA GLN ILE HIS PRO GLU GLN TYR HIS ARG LEU SEQRES 11 B 367 SER PRO PHE ASP ASP ARG VAL ARG ALA GLN VAL GLY MET SEQRES 12 B 367 LEU TYR GLU ASP LEU ALA GLY HIS ALA ALA PHE ASP GLY SEQRES 13 B 367 ILE LEU PHE HIS ASP ASP ALA LEU LEU SER ASP TYR GLU SEQRES 14 B 367 ASP ALA SER ALA PRO ALA ILE THR ALA TYR GLN GLN ALA SEQRES 15 B 367 GLY PHE SER GLY SER LEU SER GLU ILE ARG GLN ASN PRO SEQRES 16 B 367 GLU GLN PHE LYS GLN TRP ALA ARG PHE LYS SER ARG ALA SEQRES 17 B 367 LEU THR ASP PHE THR LEU GLU LEU SER ALA ARG VAL LYS SEQRES 18 B 367 ALA ILE ARG GLY PRO HIS ILE LYS THR ALA ARG ASN ILE SEQRES 19 B 367 PHE ALA LEU PRO VAL ILE GLN PRO GLU SER GLU ALA TRP SEQRES 20 B 367 PHE ALA GLN ASN TYR ALA ASP PHE LEU LYS SER TYR ASP SEQRES 21 B 367 TRP THR ALA ILE MET ALA MET PRO TYR LEU GLU GLY VAL SEQRES 22 B 367 ALA GLU LYS SER ALA ASP GLN TRP LEU ILE GLN LEU THR SEQRES 23 B 367 ASN GLN ILE LYS ASN ILE PRO GLN ALA LYS ASP LYS SER SEQRES 24 B 367 ILE LEU GLU LEU GLN ALA GLN ASN TRP GLN LYS ASN GLY SEQRES 25 B 367 GLN HIS GLN ALA ILE SER SER GLN GLN LEU ALA HIS TRP SEQRES 26 B 367 MET SER LEU LEU GLN LEU ASN GLY VAL LYS ASN TYR GLY SEQRES 27 B 367 TYR TYR PRO ASP ASN PHE LEU HIS ASN GLN PRO GLU ILE SEQRES 28 B 367 ASP LEU ILE ARG PRO GLU PHE SER THR ALA TRP TYR PRO SEQRES 29 B 367 LYS ASN ASP FORMUL 3 HOH *814(H2 O) HELIX 1 AA1 ASP A 320 VAL A 324 5 5 HELIX 2 AA2 ASN A 328 GLN A 347 1 20 HELIX 3 AA3 ILE A 381 SER A 393 1 13 HELIX 4 AA4 ASP A 439 GLY A 455 1 17 HELIX 5 AA5 SER A 477 GLY A 488 1 12 HELIX 6 AA6 SER A 492 GLN A 498 1 7 HELIX 7 AA7 ASN A 499 GLY A 530 1 32 HELIX 8 AA8 PHE A 540 GLN A 546 1 7 HELIX 9 AA9 PRO A 547 PHE A 553 5 7 HELIX 10 AB1 ASN A 556 TYR A 564 1 9 HELIX 11 AB2 ALA A 579 LYS A 581 5 3 HELIX 12 AB3 SER A 582 ASN A 596 1 15 HELIX 13 AB4 GLN A 599 ASP A 602 5 4 HELIX 14 AB5 SER A 623 ASN A 637 1 15 HELIX 15 AB6 ASN A 648 ASN A 652 5 5 HELIX 16 AB7 GLU A 655 ARG A 660 1 6 HELIX 17 AB8 PRO A 661 PHE A 663 5 3 HELIX 18 AB9 ASP B 320 VAL B 324 5 5 HELIX 19 AC1 ASN B 328 GLN B 347 1 20 HELIX 20 AC2 ILE B 381 SER B 393 1 13 HELIX 21 AC3 ASP B 439 ALA B 457 1 19 HELIX 22 AC4 SER B 477 ALA B 487 1 11 HELIX 23 AC5 SER B 492 ASN B 499 1 8 HELIX 24 AC6 ASN B 499 GLY B 530 1 32 HELIX 25 AC7 PHE B 540 GLN B 546 1 7 HELIX 26 AC8 PRO B 547 PHE B 553 5 7 HELIX 27 AC9 ASN B 556 TYR B 564 1 9 HELIX 28 AD1 ALA B 579 LYS B 581 5 3 HELIX 29 AD2 SER B 582 ASN B 596 1 15 HELIX 30 AD3 ALA B 600 ASP B 602 5 3 HELIX 31 AD4 SER B 623 ASN B 637 1 15 HELIX 32 AD5 ASN B 648 ASN B 652 5 5 HELIX 33 AD6 GLU B 655 ARG B 660 1 6 HELIX 34 AD7 PRO B 661 PHE B 663 5 3 SHEET 1 AA1 9 ARG A 315 ILE A 319 0 SHEET 2 AA1 9 THR A 350 GLN A 354 1 O TYR A 352 N ILE A 319 SHEET 3 AA1 9 ASN A 396 MET A 401 1 O TYR A 398 N LEU A 353 SHEET 4 AA1 9 GLY A 461 PHE A 464 1 O LEU A 463 N ALA A 399 SHEET 5 AA1 9 LYS A 534 ILE A 539 1 O ALA A 536 N PHE A 464 SHEET 6 AA1 9 TRP A 566 MET A 570 1 O MET A 570 N ILE A 539 SHEET 7 AA1 9 SER A 604 GLN A 609 1 O GLU A 607 N ILE A 569 SHEET 8 AA1 9 TYR A 642 TYR A 645 1 O GLY A 643 N LEU A 608 SHEET 9 AA1 9 ARG A 315 ILE A 319 1 N HIS A 318 O TYR A 644 SHEET 1 AA2 2 GLN A 611 ASN A 612 0 SHEET 2 AA2 2 GLN A 620 ALA A 621 -1 O GLN A 620 N ASN A 612 SHEET 1 AA3 9 ARG B 315 ILE B 319 0 SHEET 2 AA3 9 THR B 350 GLN B 354 1 O TYR B 352 N ILE B 319 SHEET 3 AA3 9 ASN B 396 MET B 401 1 O TRP B 400 N LEU B 353 SHEET 4 AA3 9 GLY B 461 PHE B 464 1 O LEU B 463 N ALA B 399 SHEET 5 AA3 9 LYS B 534 ILE B 539 1 O ALA B 536 N PHE B 464 SHEET 6 AA3 9 TRP B 566 MET B 570 1 O MET B 570 N ILE B 539 SHEET 7 AA3 9 SER B 604 GLN B 609 1 O GLU B 607 N ILE B 569 SHEET 8 AA3 9 TYR B 642 TYR B 645 1 O GLY B 643 N LEU B 608 SHEET 9 AA3 9 ARG B 315 ILE B 319 1 N HIS B 318 O TYR B 644 SHEET 1 AA4 2 GLN B 611 ASN B 612 0 SHEET 2 AA4 2 GLN B 620 ALA B 621 -1 O GLN B 620 N ASN B 612 CISPEP 1 GLU A 474 ASP A 475 0 -16.07 CISPEP 2 TYR A 645 PRO A 646 0 -7.02 CISPEP 3 GLN A 653 PRO A 654 0 2.39 CISPEP 4 GLU B 474 ASP B 475 0 -15.09 CISPEP 5 TYR B 645 PRO B 646 0 -5.42 CISPEP 6 GLN B 653 PRO B 654 0 -2.09 CRYST1 41.618 54.016 86.460 101.70 98.30 90.19 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.024028 0.000081 0.003599 0.00000 SCALE2 0.000000 0.018513 0.003888 0.00000 SCALE3 0.000000 0.000000 0.011943 0.00000