HEADER CYTOKINE/INHIBITOR 27-MAR-14 4P7S TITLE CRYSTAL STRUCTURE OF PFMIF IN COMPLEX WITH 4-(3-METHOXY-5- TITLE 2 METHYLPHENOXY)-2-(4-METHOXYPHENYL)-6-METHYLPYRIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MACROPHAGE MIGRATION INHIBITORY FACTOR-LIKE PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_TAXID: 5833; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS INHIBITOR, MALARIA COMPLEX ACTIVE SITE, CYTOKINE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.PANTOURIS,E.LOLIS REVDAT 5 27-DEC-23 4P7S 1 REMARK REVDAT 4 22-NOV-17 4P7S 1 REMARK REVDAT 3 14-OCT-15 4P7S 1 REMARK REVDAT 2 05-NOV-14 4P7S 1 JRNL REVDAT 1 15-OCT-14 4P7S 0 JRNL AUTH G.PANTOURIS,D.RAJASEKARAN,A.B.GARCIA,V.G.RUIZ,L.LENG, JRNL AUTH 2 W.L.JORGENSEN,R.BUCALA,E.J.LOLIS JRNL TITL CRYSTALLOGRAPHIC AND RECEPTOR BINDING CHARACTERIZATION OF JRNL TITL 2 PLASMODIUM FALCIPARUM MACROPHAGE MIGRATION INHIBITORY FACTOR JRNL TITL 3 COMPLEXED TO TWO POTENT INHIBITORS. JRNL REF J.MED.CHEM. V. 57 8652 2014 JRNL REFN ISSN 0022-2623 JRNL PMID 25268646 JRNL DOI 10.1021/JM501168Q REMARK 2 REMARK 2 RESOLUTION. 2.87 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.87 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 7270 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.290 REMARK 3 R VALUE (WORKING SET) : 0.287 REMARK 3 FREE R VALUE : 0.345 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.600 REMARK 3 FREE R VALUE TEST SET COUNT : 334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.88 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 473 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.09 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 28 REMARK 3 BIN FREE R VALUE : 0.3560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2086 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.02000 REMARK 3 B22 (A**2) : 0.17000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.468 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.563 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.005 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.835 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.773 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4P7S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200875. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000, DENZO REMARK 200 DATA SCALING SOFTWARE : HKL-2000, SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7288 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.880 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.88 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 M AMMONIUM SULPHATE, 0.1 M NACL, 0.1 REMARK 280 M TRIS.HCL PH 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.77700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.06900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 48.83150 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.77700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.06900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 48.83150 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.77700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 40.06900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 48.83150 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.77700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 40.06900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.83150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13550 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -42.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -79.55400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 65 REMARK 465 GLY A 66 REMARK 465 GLY A 67 REMARK 465 ILE A 68 REMARK 465 ASN A 69 REMARK 465 ARG A 70 REMARK 465 CYS A 102 REMARK 465 SER A 103 REMARK 465 ALA A 104 REMARK 465 GLN A 105 REMARK 465 MET B 31 REMARK 465 GLY B 32 REMARK 465 GLY B 66 REMARK 465 GLY B 67 REMARK 465 ILE B 68 REMARK 465 ASN B 69 REMARK 465 ARG B 70 REMARK 465 SER B 71 REMARK 465 SER B 103 REMARK 465 ALA B 104 REMARK 465 GLN B 105 REMARK 465 SER B 110 REMARK 465 LEU B 113 REMARK 465 PHE B 114 REMARK 465 SER C 28 REMARK 465 GLY C 32 REMARK 465 LYS C 33 REMARK 465 PRO C 34 REMARK 465 ILE C 65 REMARK 465 GLY C 66 REMARK 465 GLY C 67 REMARK 465 ARG C 70 REMARK 465 SER C 71 REMARK 465 CYS C 102 REMARK 465 SER C 103 REMARK 465 ALA C 104 REMARK 465 GLN C 105 REMARK 465 ASN C 106 REMARK 465 PHE C 107 REMARK 465 PHE C 109 REMARK 465 SER C 110 REMARK 465 GLY C 111 REMARK 465 SER C 112 REMARK 465 LEU C 113 REMARK 465 PHE C 114 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 14 CG OD1 OD2 REMARK 470 ASP A 29 CG OD1 OD2 REMARK 470 LYS A 33 CG CD CE NZ REMARK 470 PRO A 34 CG CD REMARK 470 ILE A 38 CG1 CG2 CD1 REMARK 470 PHE A 59 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 61 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 79 OE1 NE2 REMARK 470 LEU A 83 CG CD1 CD2 REMARK 470 ASN A 89 CG OD1 ND2 REMARK 470 LYS A 91 CG CD CE NZ REMARK 470 ARG A 93 CD NE CZ NH1 NH2 REMARK 470 TYR A 96 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A 100 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 101 CG OD1 OD2 REMARK 470 PHE A 107 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU B 4 CG CD OE1 OE2 REMARK 470 ASP B 14 CG OD1 OD2 REMARK 470 ASN B 15 CB CG OD1 ND2 REMARK 470 ILE B 27 CG1 CG2 CD1 REMARK 470 ASP B 29 CG OD1 OD2 REMARK 470 VAL B 30 CG1 CG2 REMARK 470 LYS B 33 CG CD CE NZ REMARK 470 PRO B 34 CG CD REMARK 470 LEU B 35 CB CG CD1 CD2 REMARK 470 TYR B 37 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 55 CD OE1 OE2 REMARK 470 ARG B 61 CG CD NE CZ NH1 NH2 REMARK 470 SER B 74 OG REMARK 470 LEU B 76 CG CD1 CD2 REMARK 470 GLN B 79 CG CD OE1 NE2 REMARK 470 ILE B 80 CG1 CG2 CD1 REMARK 470 LYS B 82 CG CD CE NZ REMARK 470 ASN B 87 CG OD1 ND2 REMARK 470 ASN B 89 CG OD1 ND2 REMARK 470 LYS B 91 CG CD CE NZ REMARK 470 ARG B 93 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 95 CG1 CG2 CD1 REMARK 470 TYR B 96 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU B 98 CG CD OE1 OE2 REMARK 470 ARG B 100 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 101 CG OD1 OD2 REMARK 470 PHE B 109 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 112 O OG REMARK 470 ASP C 14 CG OD1 OD2 REMARK 470 ASN C 15 CG OD1 ND2 REMARK 470 ILE C 27 CG1 CG2 CD1 REMARK 470 ASP C 29 CG OD1 OD2 REMARK 470 MET C 31 CG SD CE REMARK 470 LEU C 35 CG CD1 CD2 REMARK 470 TYR C 37 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ILE C 38 CG1 CG2 CD1 REMARK 470 LYS C 46 CG CD CE NZ REMARK 470 ARG C 61 CG CD NE CZ NH1 NH2 REMARK 470 SER C 64 C O REMARK 470 ILE C 68 CD1 REMARK 470 ASN C 72 CG OD1 ND2 REMARK 470 LEU C 76 CG CD1 CD2 REMARK 470 ILE C 80 CD1 REMARK 470 LYS C 82 CG CD CE NZ REMARK 470 LEU C 84 CG CD1 CD2 REMARK 470 LEU C 88 CG CD1 CD2 REMARK 470 ASN C 89 CG OD1 ND2 REMARK 470 LYS C 91 CG CD CE NZ REMARK 470 ARG C 93 NE CZ NH1 NH2 REMARK 470 GLU C 98 CG CD OE1 OE2 REMARK 470 ARG C 100 CG CD NE CZ NH1 NH2 REMARK 470 ASP C 101 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N PRO C 1 CAK 2OK C 201 2.15 REMARK 500 CD PRO B 1 OAQ 2OK B 201 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 37 51.12 -111.33 REMARK 500 SER B 64 67.51 63.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2OK B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2OK C 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P7M RELATED DB: PDB DBREF 4P7S A 1 114 UNP Q6Q3H7 Q6Q3H7_PLAFA 2 115 DBREF 4P7S B 1 114 UNP Q6Q3H7 Q6Q3H7_PLAFA 2 115 DBREF 4P7S C 1 114 UNP Q6Q3H7 Q6Q3H7_PLAFA 2 115 SEQRES 1 A 114 PRO CYS CYS GLU VAL ILE THR ASN VAL ASN LEU PRO ASP SEQRES 2 A 114 ASP ASN VAL GLN SER THR LEU SER GLN ILE GLU ASN ALA SEQRES 3 A 114 ILE SER ASP VAL MET GLY LYS PRO LEU GLY TYR ILE MET SEQRES 4 A 114 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE GLY GLY SEQRES 5 A 114 SER ASN GLU ALA TYR CYS PHE VAL ARG ILE THR SER ILE SEQRES 6 A 114 GLY GLY ILE ASN ARG SER ASN ASN SER ALA LEU ALA ASP SEQRES 7 A 114 GLN ILE THR LYS LEU LEU VAL SER ASN LEU ASN VAL LYS SEQRES 8 A 114 SER ARG ARG ILE TYR VAL GLU PHE ARG ASP CYS SER ALA SEQRES 9 A 114 GLN ASN PHE ALA PHE SER GLY SER LEU PHE SEQRES 1 B 114 PRO CYS CYS GLU VAL ILE THR ASN VAL ASN LEU PRO ASP SEQRES 2 B 114 ASP ASN VAL GLN SER THR LEU SER GLN ILE GLU ASN ALA SEQRES 3 B 114 ILE SER ASP VAL MET GLY LYS PRO LEU GLY TYR ILE MET SEQRES 4 B 114 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE GLY GLY SEQRES 5 B 114 SER ASN GLU ALA TYR CYS PHE VAL ARG ILE THR SER ILE SEQRES 6 B 114 GLY GLY ILE ASN ARG SER ASN ASN SER ALA LEU ALA ASP SEQRES 7 B 114 GLN ILE THR LYS LEU LEU VAL SER ASN LEU ASN VAL LYS SEQRES 8 B 114 SER ARG ARG ILE TYR VAL GLU PHE ARG ASP CYS SER ALA SEQRES 9 B 114 GLN ASN PHE ALA PHE SER GLY SER LEU PHE SEQRES 1 C 114 PRO CYS CYS GLU VAL ILE THR ASN VAL ASN LEU PRO ASP SEQRES 2 C 114 ASP ASN VAL GLN SER THR LEU SER GLN ILE GLU ASN ALA SEQRES 3 C 114 ILE SER ASP VAL MET GLY LYS PRO LEU GLY TYR ILE MET SEQRES 4 C 114 SER ASN TYR ASP TYR GLN LYS ASN LEU ARG PHE GLY GLY SEQRES 5 C 114 SER ASN GLU ALA TYR CYS PHE VAL ARG ILE THR SER ILE SEQRES 6 C 114 GLY GLY ILE ASN ARG SER ASN ASN SER ALA LEU ALA ASP SEQRES 7 C 114 GLN ILE THR LYS LEU LEU VAL SER ASN LEU ASN VAL LYS SEQRES 8 C 114 SER ARG ARG ILE TYR VAL GLU PHE ARG ASP CYS SER ALA SEQRES 9 C 114 GLN ASN PHE ALA PHE SER GLY SER LEU PHE HET 2OK B 201 25 HET 2OK C 201 25 HETNAM 2OK 4-(3-METHOXY-5-METHYLPHENOXY)-2-(4-METHOXYPHENYL)-6- HETNAM 2 2OK METHYLPYRIDINE FORMUL 4 2OK 2(C21 H21 N O3) HELIX 1 AA1 PRO A 12 GLY A 32 1 21 HELIX 2 AA2 ASN A 72 ASN A 89 1 18 HELIX 3 AA3 LYS A 91 ARG A 93 5 3 HELIX 4 AA4 SER A 112 PHE A 114 5 3 HELIX 5 AA5 PRO B 12 VAL B 30 1 19 HELIX 6 AA6 ASN B 73 ASN B 89 1 17 HELIX 7 AA7 LYS B 91 ARG B 93 5 3 HELIX 8 AA8 PRO C 12 ILE C 27 1 16 HELIX 9 AA9 ASP C 29 MET C 31 5 3 HELIX 10 AB1 ASN C 73 ASN C 89 1 17 HELIX 11 AB2 LYS C 91 ARG C 93 5 3 SHEET 1 AA1 6 PHE B 107 PHE B 109 0 SHEET 2 AA1 6 ILE A 95 ARG A 100 -1 N PHE A 99 O PHE B 107 SHEET 3 AA1 6 CYS A 58 THR A 63 1 N VAL A 60 O GLU A 98 SHEET 4 AA1 6 CYS A 2 THR A 7 -1 N ILE A 6 O PHE A 59 SHEET 5 AA1 6 MET A 39 TYR A 44 1 O ASP A 43 N VAL A 5 SHEET 6 AA1 6 ARG C 49 PHE C 50 -1 O ARG C 49 N SER A 40 SHEET 1 AA2 5 ARG A 49 PHE A 50 0 SHEET 2 AA2 5 MET B 39 TYR B 44 -1 O SER B 40 N ARG A 49 SHEET 3 AA2 5 CYS B 2 THR B 7 1 N VAL B 5 O ASP B 43 SHEET 4 AA2 5 CYS B 58 THR B 63 -1 O PHE B 59 N ILE B 6 SHEET 5 AA2 5 ILE B 95 ARG B 100 1 O GLU B 98 N VAL B 60 SHEET 1 AA3 6 PHE A 107 SER A 110 0 SHEET 2 AA3 6 ILE C 95 ARG C 100 -1 O PHE C 99 N PHE A 107 SHEET 3 AA3 6 CYS C 58 THR C 63 1 N VAL C 60 O GLU C 98 SHEET 4 AA3 6 CYS C 2 THR C 7 -1 N ILE C 6 O PHE C 59 SHEET 5 AA3 6 MET C 39 TYR C 44 1 O ASP C 43 N VAL C 5 SHEET 6 AA3 6 ARG B 49 PHE B 50 -1 N ARG B 49 O SER C 40 SITE 1 AC1 10 PHE A 50 TYR A 57 GLU A 98 PHE A 99 SITE 2 AC1 10 ARG A 100 PRO B 1 TYR B 37 MET B 39 SITE 3 AC1 10 ASN B 106 PHE B 107 SITE 1 AC2 5 PHE B 50 TYR B 57 PRO C 1 MET C 39 SITE 2 AC2 5 SER C 64 CRYST1 79.554 80.138 97.663 90.00 90.00 90.00 I 2 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012570 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012478 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010239 0.00000