HEADER OXIDOREDUCTASE 28-MAR-14 4P7X TITLE L-PIPECOLIC ACID-BOUND L-PROLINE CIS-4-HYDROXYLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: L-PROLINE CIS-4-HYDROXYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: P4H; COMPND 5 EC: 1.14.11.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM LOTI; SOURCE 3 ORGANISM_TAXID: 266835; SOURCE 4 STRAIN: MAFF303099; SOURCE 5 GENE: MLR6283; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HYDROXYLASE, PROLINE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHOMURA,K.KOKETSU,K.MORIWAKI,M.HAYASHI,S.MITSUHASHI,R.HARA,K.KINO, AUTHOR 2 Y.HIGUCHI REVDAT 4 27-DEC-23 4P7X 1 REMARK REVDAT 3 27-SEP-17 4P7X 1 SOURCE KEYWDS REMARK REVDAT 2 29-APR-15 4P7X 1 JRNL REVDAT 1 17-SEP-14 4P7X 0 JRNL AUTH K.KOKETSU,Y.SHOMURA,K.MORIWAKI,M.HAYASHI,S.MITSUHASHI, JRNL AUTH 2 R.HARA,K.KINO,Y.HIGUCHI JRNL TITL REFINED REGIO- AND STEREOSELECTIVE HYDROXYLATION OF JRNL TITL 2 L-PIPECOLIC ACID BY PROTEIN ENGINEERING OF L-PROLINE JRNL TITL 3 CIS-4-HYDROXYLASE BASED ON THE X-RAY CRYSTAL STRUCTURE. JRNL REF ACS SYNTH BIOL V. 4 383 2015 JRNL REFN ESSN 2161-5063 JRNL PMID 25171735 JRNL DOI 10.1021/SB500247A REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.87 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 97557 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.137 REMARK 3 R VALUE (WORKING SET) : 0.135 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4882 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6760 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.2010 REMARK 3 BIN FREE R VALUE SET COUNT : 338 REMARK 3 BIN FREE R VALUE : 0.2300 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2312 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 68 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : -0.61000 REMARK 3 B33 (A**2) : 1.29000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.038 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.142 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.978 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.971 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2581 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2431 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3530 ; 1.415 ; 1.976 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5621 ; 0.788 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 332 ; 6.380 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;33.860 ;23.704 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 453 ;11.920 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;16.869 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 391 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2945 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 619 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1198 ; 1.708 ; 1.940 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1193 ; 1.697 ; 1.938 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1506 ; 2.179 ; 2.929 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5012 ; 2.097 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 90 ;33.368 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 5196 ;11.811 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4P7X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-14. REMARK 100 THE DEPOSITION ID IS D_1000200882. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX325HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97557 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 19.870 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.48100 REMARK 200 R SYM FOR SHELL (I) : 0.48100 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.1.03 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CAPS, AMMONIUM SULFATE, LITHIUM REMARK 280 SULFATE, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 28.49000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 28.49000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.34000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.69750 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.34000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.69750 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.49000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.34000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.69750 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 28.49000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.34000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.69750 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ALA A -10 REMARK 465 SER A -9 REMARK 465 TRP A -8 REMARK 465 SER A -7 REMARK 465 HIS A -6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 109 -2.94 81.20 REMARK 500 GLU A 134 -119.49 55.07 REMARK 500 GLU A 134 -116.25 50.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A 301 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 106 NE2 REMARK 620 2 ASP A 108 OD2 99.6 REMARK 620 3 HIS A 154 NE2 92.6 90.4 REMARK 620 4 AKG A 302 C1 140.5 116.0 103.4 REMARK 620 5 AKG A 302 O1 151.3 92.6 113.3 24.6 REMARK 620 6 AKG A 302 C2 114.9 145.3 91.4 30.6 55.2 REMARK 620 7 AKG A 302 O5 91.2 169.2 88.9 53.9 77.7 24.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AKG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue YCP A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CXS A 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CXS A 309 DBREF 4P7X A 2 280 UNP Q989T9 P4H_RHILO 2 280 SEQADV 4P7X MET A -11 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X ALA A -10 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X SER A -9 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X TRP A -8 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X SER A -7 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X HIS A -6 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X PRO A -5 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X GLN A -4 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X PHE A -3 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X GLU A -2 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X LYS A -1 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X GLY A 0 UNP Q989T9 EXPRESSION TAG SEQADV 4P7X ALA A 1 UNP Q989T9 EXPRESSION TAG SEQRES 1 A 292 MET ALA SER TRP SER HIS PRO GLN PHE GLU LYS GLY ALA SEQRES 2 A 292 THR THR ARG ILE LEU GLY VAL VAL GLN LEU ASP GLN ARG SEQRES 3 A 292 ARG LEU THR ASP ASP LEU ALA VAL LEU ALA LYS SER ASN SEQRES 4 A 292 PHE SER SER GLU TYR SER ASP PHE ALA CYS GLY ARG TRP SEQRES 5 A 292 GLU PHE CYS MET LEU ARG ASN GLN SER GLY LYS GLN GLU SEQRES 6 A 292 GLU GLN ARG VAL VAL VAL HIS GLU THR PRO ALA LEU ALA SEQRES 7 A 292 THR PRO LEU GLY GLN SER LEU PRO TYR LEU ASN GLU LEU SEQRES 8 A 292 LEU ASP ASN HIS PHE ASP ARG ASP SER ILE ARG TYR ALA SEQRES 9 A 292 ARG ILE ILE ARG ILE SER GLU ASN ALA CYS ILE ILE PRO SEQRES 10 A 292 HIS ARG ASP TYR LEU GLU LEU GLU GLY LYS PHE ILE ARG SEQRES 11 A 292 VAL HIS LEU VAL LEU ASP THR ASN GLU LYS CYS SER ASN SEQRES 12 A 292 THR GLU GLU ASN ASN ILE PHE HIS MET GLY ARG GLY GLU SEQRES 13 A 292 ILE TRP PHE LEU ASP ALA SER LEU PRO HIS SER ALA GLY SEQRES 14 A 292 CYS PHE SER PRO THR PRO ARG LEU HIS LEU VAL VAL ASP SEQRES 15 A 292 ILE GLU GLY THR ARG SER LEU GLU GLU VAL ALA ILE ASN SEQRES 16 A 292 VAL GLU GLN PRO SER ALA ARG ASN ALA THR VAL ASP THR SEQRES 17 A 292 ARG LYS GLU TRP THR ASP GLU THR LEU GLU SER VAL LEU SEQRES 18 A 292 GLY PHE SER GLU ILE ILE SER GLU ALA ASN TYR ARG GLU SEQRES 19 A 292 ILE VAL ALA ILE LEU ALA LYS LEU HIS PHE PHE HIS LYS SEQRES 20 A 292 VAL HIS CYS VAL ASP MET TYR GLY TRP LEU LYS GLU ILE SEQRES 21 A 292 CYS ARG ARG ARG GLY GLU PRO ALA LEU ILE GLU LYS ALA SEQRES 22 A 292 ASN SER LEU GLU ARG PHE TYR LEU ILE ASP ARG ALA ALA SEQRES 23 A 292 GLY GLU VAL MET THR TYR HET CO A 301 1 HET AKG A 302 10 HET YCP A 303 9 HET SO4 A 304 5 HET SO4 A 305 5 HET SO4 A 306 5 HET SO4 A 307 5 HET CXS A 308 14 HET CXS A 309 14 HETNAM CO COBALT (II) ION HETNAM AKG 2-OXOGLUTARIC ACID HETNAM YCP (2S)-PIPERIDINE-2-CARBOXYLIC ACID HETNAM SO4 SULFATE ION HETNAM CXS 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID FORMUL 2 CO CO 2+ FORMUL 3 AKG C5 H6 O5 FORMUL 4 YCP C6 H11 N O2 FORMUL 5 SO4 4(O4 S 2-) FORMUL 9 CXS 2(C9 H19 N O3 S) FORMUL 11 HOH *342(H2 O) HELIX 1 AA1 ASP A 12 ALA A 24 1 13 HELIX 2 AA2 TYR A 32 ASP A 34 5 3 HELIX 3 AA3 THR A 67 SER A 72 1 6 HELIX 4 AA4 LEU A 73 PHE A 84 1 12 HELIX 5 AA5 ASP A 85 ASP A 87 5 3 HELIX 6 AA6 SER A 176 VAL A 180 5 5 HELIX 7 AA7 THR A 201 GLY A 210 1 10 HELIX 8 AA8 PHE A 211 ILE A 214 5 4 HELIX 9 AA9 ASN A 219 LEU A 230 1 12 HELIX 10 AB1 HIS A 231 PHE A 233 5 3 HELIX 11 AB2 VAL A 239 GLY A 253 1 15 HELIX 12 AB3 GLU A 254 ILE A 270 1 17 SHEET 1 AA1 7 ARG A 4 VAL A 8 0 SHEET 2 AA1 7 GLU A 144 LEU A 148 -1 O ILE A 145 N GLY A 7 SHEET 3 AA1 7 PHE A 116 ASP A 124 -1 N HIS A 120 O TRP A 146 SHEET 4 AA1 7 ARG A 164 GLU A 172 -1 O LEU A 167 N LEU A 121 SHEET 5 AA1 7 ILE A 89 ILE A 97 -1 N ARG A 90 O ASP A 170 SHEET 6 AA1 7 TRP A 40 ASN A 47 -1 N LEU A 45 O ALA A 92 SHEET 7 AA1 7 LEU A 65 ALA A 66 -1 O LEU A 65 N ASN A 47 SHEET 1 AA2 5 ALA A 36 CYS A 37 0 SHEET 2 AA2 5 ALA A 101 HIS A 106 -1 O CYS A 102 N CYS A 37 SHEET 3 AA2 5 HIS A 154 CYS A 158 -1 O HIS A 154 N HIS A 106 SHEET 4 AA2 5 CYS A 129 GLU A 133 -1 N SER A 130 O GLY A 157 SHEET 5 AA2 5 ASN A 136 PHE A 138 -1 O PHE A 138 N ASN A 131 LINK NE2 HIS A 106 CO CO A 301 1555 1555 2.14 LINK OD2 ASP A 108 CO CO A 301 1555 1555 2.03 LINK NE2 HIS A 154 CO CO A 301 1555 1555 2.10 LINK CO CO A 301 C1 AKG A 302 1555 1555 2.77 LINK CO CO A 301 O1 AKG A 302 1555 1555 2.01 LINK CO CO A 301 C2 AKG A 302 1555 1555 2.80 LINK CO CO A 301 O5 AKG A 302 1555 1555 2.13 SITE 1 AC1 4 HIS A 106 ASP A 108 HIS A 154 AKG A 302 SITE 1 AC2 12 TRP A 40 ILE A 95 ILE A 97 HIS A 106 SITE 2 AC2 12 ASP A 108 ARG A 118 HIS A 120 ASN A 131 SITE 3 AC2 12 HIS A 154 ALA A 156 ARG A 164 CO A 301 SITE 1 AC3 9 PHE A 35 TRP A 40 VAL A 57 ARG A 93 SITE 2 AC3 9 ILE A 103 ASP A 108 ARG A 118 HOH A 491 SITE 3 AC3 9 HOH A 492 SITE 1 AC4 5 ASN A 27 GLN A 52 GLN A 55 HOH A 540 SITE 2 AC4 5 HOH A 573 SITE 1 AC5 6 GLU A 53 GLU A 54 GLN A 55 ARG A 56 SITE 2 AC5 6 CXS A 308 HOH A 683 SITE 1 AC6 4 ILE A 182 ASN A 183 VAL A 184 HOH A 443 SITE 1 AC7 5 CXS A 308 HOH A 597 HOH A 667 HOH A 725 SITE 2 AC7 5 HOH A 726 SITE 1 AC8 10 GLU A 54 ARG A 56 GLY A 275 SO4 A 305 SITE 2 AC8 10 SO4 A 307 HOH A 595 HOH A 597 HOH A 632 SITE 3 AC8 10 HOH A 676 HOH A 679 SITE 1 AC9 4 GLU A 113 GLU A 133 PHE A 138 HOH A 456 CRYST1 112.680 123.395 56.980 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008875 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008104 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017550 0.00000