HEADER VIRAL PROTEIN 02-APR-14 4P9A TITLE X-RAY CRYSTAL STRUCTURE OF PA PROTEIN FROM INFLUENZA STRAIN H7N9 COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 1322048; SOURCE 4 STRAIN: A/CHICKEN/ZHEJIANG/DTID-ZJU01/2013(H7N9); SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS PA PROTEIN INFLUENZA H7N9 POLYMERASE, STRUCTURAL GENOMICS, SEATTLE KEYWDS 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, SSGCID, VIRAL KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.W.FAIRMAN,S.O.MOEN,M.C.CLIFTON,T.E.EDWARDS,D.LORIMER,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 6 27-SEP-23 4P9A 1 REMARK REVDAT 5 11-DEC-19 4P9A 1 REMARK REVDAT 4 22-NOV-17 4P9A 1 REMARK REVDAT 3 06-SEP-17 4P9A 1 SOURCE REMARK REVDAT 2 20-AUG-14 4P9A 1 JRNL REVDAT 1 30-JUL-14 4P9A 0 JRNL AUTH S.O.MOEN,J.ABENDROTH,J.W.FAIRMAN,R.O.BAYDO,J.BULLEN, JRNL AUTH 2 J.L.KIRKWOOD,S.R.BARNES,A.C.RAYMOND,D.W.BEGLEY,G.HENKEL, JRNL AUTH 3 K.MCCORMACK,V.C.TAM,I.PHAN,B.L.STAKER,R.STACY,P.J.MYLER, JRNL AUTH 4 D.LORIMER,T.E.EDWARDS JRNL TITL STRUCTURAL ANALYSIS OF H1N1 AND H7N9 INFLUENZA A VIRUS PA IN JRNL TITL 2 THE ABSENCE OF PB1. JRNL REF SCI REP V. 4 5944 2014 JRNL REFN ESSN 2045-2322 JRNL PMID 25089892 JRNL DOI 10.1038/SREP05944 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.65 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 29994 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.890 REMARK 3 FREE R VALUE TEST SET COUNT : 1466 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6572 - 4.7363 0.98 3133 159 0.2102 0.2298 REMARK 3 2 4.7363 - 3.7607 1.00 2901 171 0.1727 0.2066 REMARK 3 3 3.7607 - 3.2857 1.00 2868 158 0.1892 0.1988 REMARK 3 4 3.2857 - 2.9854 1.00 2817 158 0.2186 0.2699 REMARK 3 5 2.9854 - 2.7715 1.00 2858 122 0.2301 0.2286 REMARK 3 6 2.7715 - 2.6082 1.00 2835 134 0.2225 0.2715 REMARK 3 7 2.6082 - 2.4776 1.00 2782 131 0.2095 0.2517 REMARK 3 8 2.4776 - 2.3698 1.00 2782 142 0.2123 0.2393 REMARK 3 9 2.3698 - 2.2785 1.00 2787 141 0.2130 0.2389 REMARK 3 10 2.2785 - 2.1999 1.00 2765 150 0.2152 0.2471 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.750 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3018 REMARK 3 ANGLE : 0.975 4099 REMARK 3 CHIRALITY : 0.038 467 REMARK 3 PLANARITY : 0.004 520 REMARK 3 DIHEDRAL : 12.840 1091 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 266 THROUGH 313 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.7574 31.3612 14.2697 REMARK 3 T TENSOR REMARK 3 T11: 0.1883 T22: 0.6180 REMARK 3 T33: 0.3036 T12: 0.0435 REMARK 3 T13: 0.0369 T23: 0.0759 REMARK 3 L TENSOR REMARK 3 L11: 1.9381 L22: 2.0511 REMARK 3 L33: 3.1687 L12: 1.3999 REMARK 3 L13: -1.5566 L23: 0.1999 REMARK 3 S TENSOR REMARK 3 S11: 0.1788 S12: -0.2197 S13: 0.2331 REMARK 3 S21: -0.0400 S22: -0.2392 S23: -0.1477 REMARK 3 S31: -0.1923 S32: -0.0104 S33: -0.0676 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 314 THROUGH 369 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1790 39.1957 0.3221 REMARK 3 T TENSOR REMARK 3 T11: 0.2227 T22: 0.6461 REMARK 3 T33: 0.3775 T12: -0.0376 REMARK 3 T13: 0.0212 T23: 0.1390 REMARK 3 L TENSOR REMARK 3 L11: 3.5630 L22: 1.8342 REMARK 3 L33: 3.6961 L12: 0.6467 REMARK 3 L13: -0.7130 L23: 1.0556 REMARK 3 S TENSOR REMARK 3 S11: 0.0003 S12: 0.3817 S13: 0.4355 REMARK 3 S21: -0.0842 S22: -0.1214 S23: 0.2042 REMARK 3 S31: -0.3959 S32: 0.0747 S33: 0.0113 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 370 THROUGH 415 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.9903 21.3030 19.6796 REMARK 3 T TENSOR REMARK 3 T11: 0.2841 T22: 0.7514 REMARK 3 T33: 0.4302 T12: 0.0356 REMARK 3 T13: 0.0105 T23: 0.1461 REMARK 3 L TENSOR REMARK 3 L11: 1.3967 L22: 1.7742 REMARK 3 L33: 3.2454 L12: 0.0925 REMARK 3 L13: 1.2083 L23: -0.2443 REMARK 3 S TENSOR REMARK 3 S11: -0.2467 S12: -0.0147 S13: -0.5642 REMARK 3 S21: 0.4093 S22: -0.2022 S23: -0.1869 REMARK 3 S31: 0.5394 S32: 0.7735 S33: 0.2393 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 416 THROUGH 596 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.0096 30.6180 13.1837 REMARK 3 T TENSOR REMARK 3 T11: 0.1946 T22: 0.5817 REMARK 3 T33: 0.3284 T12: 0.0586 REMARK 3 T13: 0.0290 T23: 0.1150 REMARK 3 L TENSOR REMARK 3 L11: 2.4523 L22: 1.7928 REMARK 3 L33: 3.4734 L12: 0.2830 REMARK 3 L13: -0.2053 L23: 0.0897 REMARK 3 S TENSOR REMARK 3 S11: 0.0507 S12: -0.1782 S13: -0.0902 REMARK 3 S21: 0.2330 S22: -0.0081 S23: 0.1820 REMARK 3 S31: -0.1073 S32: -0.3345 S33: -0.0391 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 597 THROUGH 671 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.1916 14.4058 26.8262 REMARK 3 T TENSOR REMARK 3 T11: 0.5592 T22: 0.7370 REMARK 3 T33: 0.5250 T12: -0.1846 REMARK 3 T13: 0.1716 T23: 0.0907 REMARK 3 L TENSOR REMARK 3 L11: 1.7249 L22: 3.7841 REMARK 3 L33: 1.3816 L12: 0.3569 REMARK 3 L13: 0.7067 L23: -1.8768 REMARK 3 S TENSOR REMARK 3 S11: -0.0911 S12: 0.0176 S13: -0.4819 REMARK 3 S21: 0.5539 S22: -0.3047 S23: 0.6734 REMARK 3 S31: 0.5877 S32: -0.7111 S33: 0.2004 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 672 THROUGH 713 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2330 4.9423 26.9213 REMARK 3 T TENSOR REMARK 3 T11: 0.6348 T22: 0.7230 REMARK 3 T33: 0.5747 T12: -0.0054 REMARK 3 T13: 0.1868 T23: 0.2097 REMARK 3 L TENSOR REMARK 3 L11: 2.0302 L22: 3.8280 REMARK 3 L33: 4.3561 L12: 1.3767 REMARK 3 L13: -0.8443 L23: -3.8269 REMARK 3 S TENSOR REMARK 3 S11: -0.1707 S12: 0.0801 S13: -0.7616 REMARK 3 S21: -0.2557 S22: -0.5391 S23: -0.6878 REMARK 3 S31: 1.1102 S32: 0.0589 S33: 0.6477 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200963. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30002 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.870 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.26 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.58500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 2ZNL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400 NL OF PROTEIN SOLUTION AT 20.77 REMARK 280 MG/ML PLUS 400 NL PRECIPITANT SOLUTION EQUILIBRATED AGAINST 80 REMARK 280 UL OF PRECIPITANT. PRECIPITANT: WIZARD 3/4 WELL A10 - 200 MM REMARK 280 SODIUM THIOCYANATE, 20% PEG3350, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 266.79333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 133.39667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 200.09500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 66.69833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 333.49167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 266.79333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 133.39667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 66.69833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 200.09500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 333.49167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 310 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -1.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 253 REMARK 465 ASN A 254 REMARK 465 ALA A 255 REMARK 465 ARG A 256 REMARK 465 ILE A 257 REMARK 465 GLU A 258 REMARK 465 PRO A 259 REMARK 465 PHE A 260 REMARK 465 LEU A 261 REMARK 465 ARG A 262 REMARK 465 THR A 263 REMARK 465 THR A 264 REMARK 465 PRO A 265 REMARK 465 SER A 296 REMARK 465 HIS A 297 REMARK 465 GLU A 298 REMARK 465 GLY A 299 REMARK 465 ASN A 373 REMARK 465 MET A 374 REMARK 465 ALA A 375 REMARK 465 PRO A 376 REMARK 465 GLU A 377 REMARK 465 LYS A 378 REMARK 465 VAL A 379 REMARK 465 ASP A 380 REMARK 465 PHE A 381 REMARK 465 GLU A 382 REMARK 465 ASP A 383 REMARK 465 CYS A 384 REMARK 465 LYS A 385 REMARK 465 ASP A 386 REMARK 465 VAL A 387 REMARK 465 ASN A 388 REMARK 465 ASP A 389 REMARK 465 LEU A 390 REMARK 465 LYS A 391 REMARK 465 GLN A 392 REMARK 465 TYR A 393 REMARK 465 ASN A 394 REMARK 465 SER A 395 REMARK 465 ASP A 396 REMARK 465 GLU A 397 REMARK 465 GLU A 427 REMARK 465 ILE A 428 REMARK 465 GLY A 429 REMARK 465 GLU A 430 REMARK 465 ASP A 431 REMARK 465 VAL A 432 REMARK 465 ALA A 433 REMARK 465 PRO A 434 REMARK 465 ILE A 435 REMARK 465 SER A 600 REMARK 465 SER A 601 REMARK 465 VAL A 602 REMARK 465 LYS A 603 REMARK 465 GLU A 604 REMARK 465 LYS A 605 REMARK 465 ASP A 606 REMARK 465 LYS A 615 REMARK 465 SER A 616 REMARK 465 GLU A 617 REMARK 465 THR A 618 REMARK 465 TRP A 619 REMARK 465 PRO A 620 REMARK 465 ILE A 621 REMARK 465 GLY A 622 REMARK 465 GLU A 623 REMARK 465 SER A 624 REMARK 465 PRO A 625 REMARK 465 LYS A 626 REMARK 465 GLY A 627 REMARK 465 VAL A 628 REMARK 465 GLU A 629 REMARK 465 GLU A 630 REMARK 465 LEU A 676 REMARK 465 GLU A 677 REMARK 465 PRO A 678 REMARK 465 GLY A 679 REMARK 465 ALA A 714 REMARK 465 LEU A 715 REMARK 465 ARG A 716 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 266 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 269 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 293 CG CD OE1 OE2 REMARK 470 ASP A 294 CG OD1 OD2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 ILE A 302 CG1 CG2 CD1 REMARK 470 LYS A 309 CG CD CE NZ REMARK 470 LYS A 312 CG CD CE NZ REMARK 470 GLU A 351 CG CD OE1 OE2 REMARK 470 GLU A 352 CG CD OE1 OE2 REMARK 470 LYS A 353 CG CD CE NZ REMARK 470 GLU A 424 CG CD OE1 OE2 REMARK 470 LEU A 425 CG CD1 CD2 REMARK 470 GLU A 436 CG CD OE1 OE2 REMARK 470 ILE A 438 CG1 CG2 CD1 REMARK 470 SER A 440 OG REMARK 470 MET A 441 CG SD CE REMARK 470 ARG A 443 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 492 CG CD CE NZ REMARK 470 GLU A 493 CG CD OE1 OE2 REMARK 470 ARG A 495 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 496 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 497 CG CD CE NZ REMARK 470 ARG A 512 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 549 CG CD1 CD2 REMARK 470 ARG A 551 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 559 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 574 CG CD CE NZ REMARK 470 LEU A 586 CG CD1 CD2 REMARK 470 SER A 594 OG REMARK 470 MET A 595 CG SD CE REMARK 470 GLU A 597 CG CD OE1 OE2 REMARK 470 GLU A 599 CG CD OE1 OE2 REMARK 470 LEU A 607 CG CD1 CD2 REMARK 470 LYS A 609 CG CD CE NZ REMARK 470 GLU A 610 CG CD OE1 OE2 REMARK 470 PHE A 612 CG CD1 CD2 CE1 CE2 CZ REMARK 470 GLU A 613 CG CD OE1 OE2 REMARK 470 LYS A 635 CG CD CE NZ REMARK 470 THR A 680 OG1 CG2 REMARK 470 PHE A 681 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ASP A 682 CG OD1 OD2 REMARK 470 GLU A 684 CG CD OE1 OE2 REMARK 470 GLU A 688 CG CD OE1 OE2 REMARK 470 PHE A 710 CG CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 712 OG1 CG2 REMARK 470 HIS A 713 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 279 16.93 -143.90 REMARK 500 ARG A 279 14.41 -142.64 REMARK 500 LEU A 284 -94.41 -110.65 REMARK 500 ALA A 476 57.70 -142.85 REMARK 500 PHE A 681 -115.11 58.04 REMARK 500 ASP A 682 -169.30 -79.55 REMARK 500 ASN A 696 8.07 -151.07 REMARK 500 THR A 712 42.77 -77.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 801 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSCGID-INVAQ.07057.A RELATED DB: TARGETTRACK DBREF 4P9A A 254 716 UNP M9V5W3 M9V5W3_9INFA 247 709 SEQADV 4P9A SER A 253 UNP M9V5W3 EXPRESSION TAG SEQRES 1 A 464 SER ASN ALA ARG ILE GLU PRO PHE LEU ARG THR THR PRO SEQRES 2 A 464 ARG PRO LEU ARG LEU PRO ASN GLY PRO PRO CYS SER GLN SEQRES 3 A 464 ARG SER LYS PHE LEU LEU MET ASP ALA LEU LYS LEU SER SEQRES 4 A 464 ILE GLU ASP PRO SER HIS GLU GLY GLU GLY ILE PRO LEU SEQRES 5 A 464 TYR ASP ALA ILE LYS CYS MET LYS THR PHE PHE GLY TRP SEQRES 6 A 464 LYS GLU PRO ASN ILE ILE LYS PRO HIS GLU LYS GLY ILE SEQRES 7 A 464 ASN PRO ASN TYR LEU LEU THR TRP LYS GLN VAL LEU ALA SEQRES 8 A 464 GLU LEU GLN ASP ILE GLU ASN GLU GLU LYS ILE PRO ARG SEQRES 9 A 464 THR LYS ASN MET LYS LYS THR SER GLN LEU LYS TRP ALA SEQRES 10 A 464 LEU GLY GLU ASN MET ALA PRO GLU LYS VAL ASP PHE GLU SEQRES 11 A 464 ASP CYS LYS ASP VAL ASN ASP LEU LYS GLN TYR ASN SER SEQRES 12 A 464 ASP GLU PRO GLU PRO ARG SER LEU ALA CYS TRP ILE GLN SEQRES 13 A 464 ASN GLU PHE ASN LYS ALA CYS GLU LEU THR ASP SER SER SEQRES 14 A 464 TRP VAL GLU LEU ASP GLU ILE GLY GLU ASP VAL ALA PRO SEQRES 15 A 464 ILE GLU HIS ILE ALA SER MET ARG ARG ASN TYR PHE THR SEQRES 16 A 464 ALA GLU VAL SER HIS CYS ARG ALA THR GLU TYR ILE MET SEQRES 17 A 464 LYS GLY VAL TYR ILE ASN THR ALA LEU LEU ASN ALA SER SEQRES 18 A 464 CYS ALA ALA MET ASP ASP PHE GLN LEU ILE PRO MET ILE SEQRES 19 A 464 SER LYS CYS ARG THR LYS GLU GLY ARG ARG LYS THR ASN SEQRES 20 A 464 LEU TYR GLY PHE ILE ILE LYS GLY ARG SER HIS LEU ARG SEQRES 21 A 464 ASN ASP THR ASP VAL VAL ASN PHE VAL SER MET GLU PHE SEQRES 22 A 464 SER LEU THR ASP PRO ARG LEU GLU PRO HIS LYS TRP GLU SEQRES 23 A 464 LYS TYR CYS VAL LEU GLU ILE GLY ASP MET LEU LEU ARG SEQRES 24 A 464 THR ALA VAL GLY GLN VAL SER ARG PRO MET PHE LEU TYR SEQRES 25 A 464 VAL ARG THR ASN GLY THR SER LYS ILE LYS MET LYS TRP SEQRES 26 A 464 GLY MET GLU MET ARG ARG CYS LEU LEU GLN SER LEU GLN SEQRES 27 A 464 GLN ILE GLU SER MET ILE GLU ALA GLU SER SER VAL LYS SEQRES 28 A 464 GLU LYS ASP LEU THR LYS GLU PHE PHE GLU ASN LYS SER SEQRES 29 A 464 GLU THR TRP PRO ILE GLY GLU SER PRO LYS GLY VAL GLU SEQRES 30 A 464 GLU GLY SER ILE GLY LYS VAL CYS ARG THR LEU LEU ALA SEQRES 31 A 464 LYS SER VAL PHE ASN SER LEU TYR ALA SER PRO GLN LEU SEQRES 32 A 464 GLU GLY PHE SER ALA GLU SER ARG LYS LEU LEU LEU ILE SEQRES 33 A 464 VAL GLN ALA LEU ARG ASP ASN LEU GLU PRO GLY THR PHE SEQRES 34 A 464 ASP LEU GLU GLY LEU TYR GLU ALA ILE GLU GLU CYS LEU SEQRES 35 A 464 ILE ASN ASP PRO TRP VAL LEU LEU ASN ALA SER TRP PHE SEQRES 36 A 464 ASN SER PHE LEU THR HIS ALA LEU ARG HET GOL A 801 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *92(H2 O) HELIX 1 AA1 ILE A 302 LYS A 312 1 11 HELIX 2 AA2 ILE A 330 ILE A 348 1 19 HELIX 3 AA3 THR A 363 LEU A 370 1 8 HELIX 4 AA4 CYS A 405 GLU A 416 1 12 HELIX 5 AA5 HIS A 437 SER A 451 1 15 HELIX 6 AA6 CYS A 453 ALA A 476 1 24 HELIX 7 AA7 GLU A 533 GLU A 538 5 6 HELIX 8 AA8 LYS A 572 GLU A 580 1 9 HELIX 9 AA9 ARG A 582 GLU A 597 1 16 HELIX 10 AB1 THR A 608 ASN A 614 1 7 HELIX 11 AB2 SER A 632 TYR A 650 1 19 HELIX 12 AB3 SER A 652 ALA A 671 1 20 HELIX 13 AB4 LEU A 672 ASN A 675 5 4 HELIX 14 AB5 LEU A 683 GLU A 692 1 10 HELIX 15 AB6 ASP A 697 THR A 712 1 16 SHEET 1 AA1 6 LEU A 290 GLU A 293 0 SHEET 2 AA1 6 ARG A 496 LYS A 506 -1 O THR A 498 N ILE A 292 SHEET 3 AA1 6 VAL A 517 SER A 526 -1 O MET A 523 N PHE A 503 SHEET 4 AA1 6 GLY A 555 SER A 571 -1 O PHE A 562 N SER A 526 SHEET 5 AA1 6 CYS A 541 THR A 552 -1 N MET A 548 O ARG A 559 SHEET 6 AA1 6 TRP A 317 LYS A 324 -1 N LYS A 324 O VAL A 542 SHEET 1 AA2 4 LEU A 290 GLU A 293 0 SHEET 2 AA2 4 ARG A 496 LYS A 506 -1 O THR A 498 N ILE A 292 SHEET 3 AA2 4 GLN A 481 ARG A 490 -1 N CYS A 489 O LYS A 497 SHEET 4 AA2 4 LYS A 358 ASN A 359 -1 N LYS A 358 O LEU A 482 SITE 1 AC1 5 LYS A 281 PHE A 282 ASN A 466 SER A 648 SITE 2 AC1 5 LEU A 649 CRYST1 68.890 68.890 400.190 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014516 0.008381 0.000000 0.00000 SCALE2 0.000000 0.016762 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002499 0.00000