HEADER TRANSPORT PROTEIN 04-APR-14 4P9K TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 VERMINEPHROBACTER EISENIAE EF01-2 (VEIS_3954, TARGET EFI-510324) A TITLE 3 NEPHRIDIAL SYMBIONT OF THE EARTHWORM EISENIA FOETIDA, BOUND TO D- TITLE 4 ERYTHRONATE WITH RESIDUAL DENSITY SUGGESTIVE OF SUPERPOSITION WITH TITLE 5 COPURIFIED ALTERNATIVE LIGAND. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER, DCTP SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRAP PERIPLASMIC SOLUTE BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VERMINEPHROBACTER EISENIAE; SOURCE 3 ORGANISM_TAXID: 391735; SOURCE 4 STRAIN: EF01-2; SOURCE 5 GENE: VEIS_3954; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 7 16-OCT-24 4P9K 1 REMARK REVDAT 6 27-DEC-23 4P9K 1 REMARK REVDAT 5 25-DEC-19 4P9K 1 REMARK REVDAT 4 20-SEP-17 4P9K 1 REMARK REVDAT 3 26-AUG-15 4P9K 1 REMARK REVDAT 2 25-FEB-15 4P9K 1 JRNL REVDAT 1 07-MAY-14 4P9K 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 142034 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 7193 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 26.5402 - 4.3440 1.00 4511 225 0.1432 0.1620 REMARK 3 2 4.3440 - 3.4504 1.00 4451 261 0.1179 0.1295 REMARK 3 3 3.4504 - 3.0149 1.00 4518 260 0.1407 0.1619 REMARK 3 4 3.0149 - 2.7396 1.00 4443 245 0.1366 0.1519 REMARK 3 5 2.7396 - 2.5434 1.00 4513 241 0.1297 0.1492 REMARK 3 6 2.5434 - 2.3935 1.00 4537 212 0.1249 0.1608 REMARK 3 7 2.3935 - 2.2737 1.00 4517 216 0.1175 0.1509 REMARK 3 8 2.2737 - 2.1748 1.00 4463 268 0.1245 0.1557 REMARK 3 9 2.1748 - 2.0911 1.00 4484 260 0.1222 0.1535 REMARK 3 10 2.0911 - 2.0190 1.00 4477 241 0.1258 0.1431 REMARK 3 11 2.0190 - 1.9559 1.00 4471 255 0.1337 0.1741 REMARK 3 12 1.9559 - 1.9000 1.00 4520 238 0.1392 0.1641 REMARK 3 13 1.9000 - 1.8500 1.00 4490 252 0.1387 0.1561 REMARK 3 14 1.8500 - 1.8048 1.00 4520 232 0.1436 0.1730 REMARK 3 15 1.8048 - 1.7638 1.00 4480 259 0.1461 0.1736 REMARK 3 16 1.7638 - 1.7263 1.00 4471 247 0.1534 0.1624 REMARK 3 17 1.7263 - 1.6918 1.00 4461 266 0.1625 0.1686 REMARK 3 18 1.6918 - 1.6598 1.00 4529 212 0.1642 0.1861 REMARK 3 19 1.6598 - 1.6302 1.00 4477 253 0.1786 0.1990 REMARK 3 20 1.6302 - 1.6026 1.00 4481 240 0.1822 0.2077 REMARK 3 21 1.6026 - 1.5767 1.00 4525 206 0.1891 0.2055 REMARK 3 22 1.5767 - 1.5525 1.00 4482 250 0.2102 0.2250 REMARK 3 23 1.5525 - 1.5296 1.00 4464 260 0.2158 0.2280 REMARK 3 24 1.5296 - 1.5081 1.00 4563 214 0.2279 0.2293 REMARK 3 25 1.5081 - 1.4877 1.00 4497 280 0.2365 0.2664 REMARK 3 26 1.4877 - 1.4684 1.00 4408 226 0.2513 0.2828 REMARK 3 27 1.4684 - 1.4500 1.00 4541 230 0.2680 0.2882 REMARK 3 28 1.4500 - 1.4326 1.00 4467 226 0.2886 0.2963 REMARK 3 29 1.4326 - 1.4159 1.00 4528 218 0.2891 0.3219 REMARK 3 30 1.4159 - 1.4000 1.00 4552 200 0.3108 0.3327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.940 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.22 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.69 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2437 REMARK 3 ANGLE : 1.202 3303 REMARK 3 CHIRALITY : 0.073 368 REMARK 3 PLANARITY : 0.006 443 REMARK 3 DIHEDRAL : 13.354 909 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 33 THROUGH 48 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.4368 44.2001 39.6326 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.2418 REMARK 3 T33: 0.1306 T12: -0.0340 REMARK 3 T13: 0.0153 T23: 0.0572 REMARK 3 L TENSOR REMARK 3 L11: 1.4915 L22: 0.9876 REMARK 3 L33: 0.1551 L12: 0.7609 REMARK 3 L13: 0.0779 L23: 0.0171 REMARK 3 S TENSOR REMARK 3 S11: -0.0135 S12: 0.1621 S13: 0.1674 REMARK 3 S21: 0.0452 S22: 0.1078 S23: 0.2365 REMARK 3 S31: 0.1401 S32: -0.4274 S33: -0.1073 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 49 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.7124 38.8009 43.4808 REMARK 3 T TENSOR REMARK 3 T11: 0.1620 T22: 0.2365 REMARK 3 T33: 0.1783 T12: -0.0766 REMARK 3 T13: 0.0122 T23: 0.0653 REMARK 3 L TENSOR REMARK 3 L11: 2.2143 L22: 0.8114 REMARK 3 L33: 1.4041 L12: 0.1195 REMARK 3 L13: -1.5487 L23: -0.1101 REMARK 3 S TENSOR REMARK 3 S11: -0.1307 S12: 0.0801 S13: -0.1282 REMARK 3 S21: 0.0357 S22: 0.1825 S23: 0.2499 REMARK 3 S31: 0.2949 S32: -0.4192 S33: -0.0199 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3624 49.6291 50.7693 REMARK 3 T TENSOR REMARK 3 T11: 0.1486 T22: 0.0829 REMARK 3 T33: 0.1098 T12: 0.0167 REMARK 3 T13: 0.0150 T23: -0.0013 REMARK 3 L TENSOR REMARK 3 L11: 0.8558 L22: 0.3816 REMARK 3 L33: 0.9828 L12: 0.0015 REMARK 3 L13: -0.2150 L23: -0.1866 REMARK 3 S TENSOR REMARK 3 S11: -0.0028 S12: -0.0764 S13: 0.1130 REMARK 3 S21: 0.1064 S22: 0.0433 S23: -0.0021 REMARK 3 S31: -0.0622 S32: -0.0829 S33: -0.0420 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.5489 49.3784 39.8678 REMARK 3 T TENSOR REMARK 3 T11: 0.0868 T22: 0.0351 REMARK 3 T33: 0.0796 T12: -0.0040 REMARK 3 T13: 0.0036 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.1614 L22: 0.3528 REMARK 3 L33: 1.3646 L12: -0.2225 REMARK 3 L13: -0.4311 L23: -0.0970 REMARK 3 S TENSOR REMARK 3 S11: 0.0494 S12: 0.0453 S13: 0.1216 REMARK 3 S21: 0.0255 S22: 0.0194 S23: -0.0099 REMARK 3 S31: -0.1065 S32: 0.0150 S33: -0.0598 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.9498 35.6357 45.4370 REMARK 3 T TENSOR REMARK 3 T11: 0.1729 T22: 0.0916 REMARK 3 T33: 0.1119 T12: -0.0247 REMARK 3 T13: -0.0000 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 2.1738 L22: 0.7054 REMARK 3 L33: 1.5181 L12: -0.5469 REMARK 3 L13: -0.7952 L23: -0.0689 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: -0.0453 S13: -0.2205 REMARK 3 S21: 0.0750 S22: 0.0695 S23: 0.0900 REMARK 3 S31: 0.2484 S32: -0.1601 S33: 0.0160 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4400 47.3865 52.1165 REMARK 3 T TENSOR REMARK 3 T11: 0.2310 T22: 0.2331 REMARK 3 T33: 0.1352 T12: -0.0107 REMARK 3 T13: -0.0133 T23: -0.0114 REMARK 3 L TENSOR REMARK 3 L11: 0.5578 L22: 0.3189 REMARK 3 L33: 1.2006 L12: 0.0124 REMARK 3 L13: -0.3432 L23: 0.1785 REMARK 3 S TENSOR REMARK 3 S11: 0.0267 S12: -0.2522 S13: 0.0391 REMARK 3 S21: 0.2341 S22: -0.0139 S23: -0.0327 REMARK 3 S31: 0.1187 S32: 0.3482 S33: 0.0086 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P9K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200978. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM 0.1.27 REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 142034 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 110.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 16.60 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 16.40 REMARK 200 R MERGE FOR SHELL (I) : 2.28700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.57 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (42.92 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 1 MM D-ERYTHRONATE); RESERVOIR ( 0.1 M TRIS PH REMARK 280 8.5 2.4 M DI-AMMONIUM PHOSPHATE ); CRYOPROTECTION (RESERVOIR + REMARK 280 20% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.87533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.93767 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 36.93767 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 73.87533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 646 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 659 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 VAL A 20 REMARK 465 ASP A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 LEU A 27 REMARK 465 TYR A 28 REMARK 465 PHE A 29 REMARK 465 GLN A 30 REMARK 465 SER A 31 REMARK 465 MSE A 32 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LYS A 321 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 596 O HOH A 614 2.00 REMARK 500 OE1 GLU A 283 O HOH A 786 2.04 REMARK 500 O HOH A 902 O HOH A 948 2.15 REMARK 500 O HOH A 636 O HOH A 650 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 565 O HOH A 605 2664 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MSE A 200 SE MSE A 200 CE -0.445 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 153 -154.65 -136.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 904 DISTANCE = 8.04 ANGSTROMS REMARK 525 HOH A 906 DISTANCE = 6.70 ANGSTROMS REMARK 525 HOH A 917 DISTANCE = 5.95 ANGSTROMS REMARK 525 HOH A 920 DISTANCE = 5.92 ANGSTROMS REMARK 525 HOH A 941 DISTANCE = 6.72 ANGSTROMS REMARK 525 HOH A 963 DISTANCE = 6.66 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EAX A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510324 RELATED DB: TARGETTRACK DBREF 4P9K A 33 335 UNP A1WPV4 A1WPV4_VEREI 33 335 SEQADV 4P9K MSE A 10 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K HIS A 11 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K HIS A 12 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K HIS A 13 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K HIS A 14 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K HIS A 15 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K HIS A 16 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K SER A 17 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K SER A 18 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K GLY A 19 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K VAL A 20 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K ASP A 21 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K LEU A 22 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K GLY A 23 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K THR A 24 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K GLU A 25 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K ASN A 26 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K LEU A 27 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K TYR A 28 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K PHE A 29 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K GLN A 30 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K SER A 31 UNP A1WPV4 EXPRESSION TAG SEQADV 4P9K MSE A 32 UNP A1WPV4 EXPRESSION TAG SEQRES 1 A 326 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 326 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ALA ALA GLN SEQRES 3 A 326 THR THR MSE ARG ILE ASN ILE SER THR ALA GLN ASN SER SEQRES 4 A 326 HIS GLN GLY VAL ALA ILE ASP THR PHE ALA LYS GLU VAL SEQRES 5 A 326 GLU LYS ARG THR GLY GLY ARG TYR LYS VAL GLN THR PHE SEQRES 6 A 326 TYR ASN ALA ALA LEU GLY ALA GLU ARG GLU SER VAL GLU SEQRES 7 A 326 ALA VAL GLN LEU GLY THR HIS GLU LEU THR PHE SER SER SEQRES 8 A 326 SER GLY PRO ILE PRO ASN PHE VAL PRO GLU THR LYS ILE SEQRES 9 A 326 LEU ASP VAL PRO PHE LEU PHE ARG ASP LYS ALA HIS ALA SEQRES 10 A 326 ARG ALA VAL LEU ASP GLY PRO ILE GLY GLN GLU LEU LEU SEQRES 11 A 326 THR ARG PHE ASP GLY LYS GLY PHE LYS ALA LEU ALA TRP SEQRES 12 A 326 ALA GLU ASN GLY PHE ARG HIS MSE SER ASN SER LYS ARG SEQRES 13 A 326 ALA VAL LYS GLU PRO GLY ASP LEU LYS GLY LEU LYS MSE SEQRES 14 A 326 ARG THR MSE GLU ASN PRO VAL HIS ILE ALA ALA TYR LYS SEQRES 15 A 326 GLY PHE GLY ILE VAL THR THR PRO MSE ALA PHE SER GLU SEQRES 16 A 326 VAL PHE THR ALA LEU GLN GLN GLY THR VAL ASP GLY GLN SEQRES 17 A 326 GLU ASN PRO LEU SER VAL ILE ILE SER ALA LYS PHE ASP SEQRES 18 A 326 GLN VAL GLN LYS HIS LEU THR LEU THR GLY HIS VAL TYR SEQRES 19 A 326 SER PRO ALA LEU PHE LEU MSE ASN LYS ALA LEU PHE ASP SEQRES 20 A 326 LYS LEU PRO ALA ALA ASP GLN GLN ALA PHE ILE ASP ALA SEQRES 21 A 326 ALA ARG GLN GLY ALA LYS LEU ASN ARG ALA ARG VAL ASP SEQRES 22 A 326 GLU ASP ASP ALA LYS GLY VAL ALA ASP LEU ARG ALA LYS SEQRES 23 A 326 GLY MSE THR VAL ILE ASP ASN ILE ASP LYS ALA ARG PHE SEQRES 24 A 326 VAL ALA ALA LEU ALA PRO VAL ASN ALA GLN PHE GLU LYS SEQRES 25 A 326 GLN PHE GLY LYS ALA ALA LEU GLU GLN ILE ARG SER ALA SEQRES 26 A 326 GLN MODRES 4P9K MSE A 38 MET MODIFIED RESIDUE MODRES 4P9K MSE A 160 MET MODIFIED RESIDUE MODRES 4P9K MSE A 178 MET MODIFIED RESIDUE MODRES 4P9K MSE A 181 MET MODIFIED RESIDUE MODRES 4P9K MSE A 200 MET MODIFIED RESIDUE MODRES 4P9K MSE A 250 MET MODIFIED RESIDUE MODRES 4P9K MSE A 297 MET MODIFIED RESIDUE HET MSE A 38 17 HET MSE A 160 17 HET MSE A 178 17 HET MSE A 181 17 HET MSE A 200 17 HET MSE A 250 17 HET MSE A 297 17 HET EAX A 401 9 HETNAM MSE SELENOMETHIONINE HETNAM EAX (2R,3R)-2,3,4-TRIHYDROXYBUTANOIC ACID HETSYN EAX ERYTHRONIC ACID FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 EAX C4 H8 O5 FORMUL 3 HOH *468(H2 O) HELIX 1 AA1 SER A 48 THR A 65 1 18 HELIX 2 AA2 ALA A 81 GLY A 92 1 12 HELIX 3 AA3 PRO A 103 PHE A 107 5 5 HELIX 4 AA4 VAL A 108 VAL A 116 5 9 HELIX 5 AA5 ASP A 122 GLY A 132 1 11 HELIX 6 AA6 GLY A 132 ARG A 141 1 10 HELIX 7 AA7 PHE A 142 LYS A 145 5 4 HELIX 8 AA8 GLU A 169 LYS A 174 5 6 HELIX 9 AA9 ASN A 183 GLY A 192 1 10 HELIX 10 AB1 ALA A 201 SER A 203 5 3 HELIX 11 AB2 GLU A 204 GLY A 212 1 9 HELIX 12 AB3 PRO A 220 ALA A 227 1 8 HELIX 13 AB4 LYS A 228 VAL A 232 5 5 HELIX 14 AB5 LYS A 252 LEU A 258 1 7 HELIX 15 AB6 PRO A 259 LYS A 295 1 37 HELIX 16 AB7 ASP A 304 LEU A 312 1 9 HELIX 17 AB8 LEU A 312 GLY A 324 1 13 HELIX 18 AB9 GLY A 324 SER A 333 1 10 SHEET 1 AA1 6 TYR A 69 PHE A 74 0 SHEET 2 AA1 6 THR A 36 ASN A 41 1 N MSE A 38 O GLN A 72 SHEET 3 AA1 6 LEU A 96 SER A 100 1 O PHE A 98 N ASN A 41 SHEET 4 AA1 6 HIS A 235 ASN A 251 -1 O LEU A 249 N THR A 97 SHEET 5 AA1 6 PHE A 147 ASN A 162 -1 N ALA A 153 O ALA A 246 SHEET 6 AA1 6 GLY A 216 ASN A 219 -1 O GLN A 217 N SER A 161 SHEET 1 AA2 5 TYR A 69 PHE A 74 0 SHEET 2 AA2 5 THR A 36 ASN A 41 1 N MSE A 38 O GLN A 72 SHEET 3 AA2 5 LEU A 96 SER A 100 1 O PHE A 98 N ASN A 41 SHEET 4 AA2 5 HIS A 235 ASN A 251 -1 O LEU A 249 N THR A 97 SHEET 5 AA2 5 THR A 298 ILE A 300 1 O ILE A 300 N LEU A 236 SHEET 1 AA3 2 LYS A 177 THR A 180 0 SHEET 2 AA3 2 VAL A 196 PRO A 199 1 O VAL A 196 N MSE A 178 LINK C THR A 37 N MSE A 38 1555 1555 1.33 LINK C MSE A 38 N ARG A 39 1555 1555 1.33 LINK C HIS A 159 N MSE A 160 1555 1555 1.33 LINK C MSE A 160 N SER A 161 1555 1555 1.34 LINK C LYS A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N ARG A 179 1555 1555 1.32 LINK C THR A 180 N MSE A 181 1555 1555 1.33 LINK C MSE A 181 N GLU A 182 1555 1555 1.32 LINK C PRO A 199 N MSE A 200 1555 1555 1.33 LINK C MSE A 200 N ALA A 201 1555 1555 1.33 LINK C LEU A 249 N MSE A 250 1555 1555 1.32 LINK C MSE A 250 N ASN A 251 1555 1555 1.33 LINK C GLY A 296 N MSE A 297 1555 1555 1.34 LINK C MSE A 297 N THR A 298 1555 1555 1.33 SITE 1 AC1 10 GLN A 50 GLU A 82 SER A 100 ASN A 155 SITE 2 AC1 10 ARG A 158 ARG A 179 MSE A 181 PHE A 202 SITE 3 AC1 10 ASN A 219 HOH A 663 CRYST1 76.290 76.290 110.813 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013108 0.007568 0.000000 0.00000 SCALE2 0.000000 0.015136 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009024 0.00000