HEADER TRANSCRIPTION REGULATOR/DNA 05-APR-14 4P9U TITLE FADR, FATTY ACID RESPONSIVE TRANSCRIPTION FACTOR FROM VIBRIO CHOLERAE, TITLE 2 IN COMPLEX WITH DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FATTY ACID METABOLISM REGULATOR PROTEIN; COMPND 3 CHAIN: E, F, A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (31-MER); COMPND 7 CHAIN: G, C; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (31-MER); COMPND 11 CHAIN: H, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 3 ORGANISM_TAXID: 666; SOURCE 4 GENE: FADR, VC_1900; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTXB1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 13 ORGANISM_TAXID: 666; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 ORGANISM_SCIENTIFIC: VIBRIO CHOLERAE; SOURCE 17 ORGANISM_TAXID: 666 KEYWDS TRANSCRIPTION REGULATOR, PROTEIN-DNA COMPLEX, TRANSCRIPTION KEYWDS 2 REGULATOR-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.J.KULL,W.SHI REVDAT 4 27-SEP-23 4P9U 1 REMARK REVDAT 3 11-DEC-19 4P9U 1 REMARK REVDAT 2 20-SEP-17 4P9U 1 SOURCE KEYWDS REMARK REVDAT 1 04-FEB-15 4P9U 0 JRNL AUTH W.SHI,G.KOVACIKOVA,W.LIN,R.K.TAYLOR,K.SKORUPSKI,F.J.KULL JRNL TITL THE 40-RESIDUE INSERTION IN VIBRIO CHOLERAE FADR FACILITATES JRNL TITL 2 BINDING OF AN ADDITIONAL FATTY ACYL-COA LIGAND. JRNL REF NAT COMMUN V. 6 6032 2015 JRNL REFN ESSN 2041-1723 JRNL PMID 25607896 JRNL DOI 10.1038/NCOMMS7032 REMARK 2 REMARK 2 RESOLUTION. 3.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.150 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 3 NUMBER OF REFLECTIONS : 40186 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.970 REMARK 3 FREE R VALUE TEST SET COUNT : 1990 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.8879 - 7.5958 0.98 2738 148 0.1589 0.1594 REMARK 3 2 7.5958 - 6.0858 0.99 2753 138 0.2110 0.2418 REMARK 3 3 6.0858 - 5.3335 0.99 2719 143 0.2239 0.2456 REMARK 3 4 5.3335 - 4.8536 0.99 2767 147 0.2153 0.2314 REMARK 3 5 4.8536 - 4.5101 0.99 2712 146 0.1918 0.2710 REMARK 3 6 4.5101 - 4.2469 0.99 2724 139 0.2012 0.2194 REMARK 3 7 4.2469 - 4.0361 0.99 2770 143 0.2129 0.2705 REMARK 3 8 4.0361 - 3.8617 0.98 2719 145 0.2301 0.3077 REMARK 3 9 3.8617 - 3.7140 0.99 2759 144 0.2262 0.2738 REMARK 3 10 3.7140 - 3.5866 0.98 2713 141 0.2518 0.2655 REMARK 3 11 3.5866 - 3.4751 0.98 2692 139 0.2676 0.3172 REMARK 3 12 3.4751 - 3.3763 0.98 2727 142 0.2664 0.3525 REMARK 3 13 3.3763 - 3.2878 0.97 2750 143 0.2964 0.3564 REMARK 3 14 3.2878 - 3.2079 0.91 2508 132 0.3275 0.3342 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.410 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 65.11 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.02 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 11848 REMARK 3 ANGLE : 1.357 16550 REMARK 3 CHIRALITY : 0.055 1816 REMARK 3 PLANARITY : 0.007 1696 REMARK 3 DIHEDRAL : 20.927 4600 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4P9U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000200954. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0781 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40186 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.208 REMARK 200 RESOLUTION RANGE LOW (A) : 19.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.510 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.9700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER (PHENIX.MOLECULAR REPLACEMENT: 1.8.4_1496) REMARK 200 STARTING MODEL: 4P96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M LITHIUM SULFATE, 0.1 M TRIS PH REMARK 280 8.5, 1.26 M AMMONIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -44.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU E 136 ND2 ASN E 140 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG E 24 OE2 GLU A 174 1565 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL F 161 CA VAL F 161 CB 0.151 REMARK 500 LYS F 162 CB LYS F 162 CG -0.190 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 HIS F 160 CB - CA - C ANGL. DEV. = 22.4 DEGREES REMARK 500 HIS F 160 N - CA - C ANGL. DEV. = -18.5 DEGREES REMARK 500 VAL F 161 CA - CB - CG1 ANGL. DEV. = 10.0 DEGREES REMARK 500 LYS F 162 CB - CA - C ANGL. DEV. = -18.9 DEGREES REMARK 500 LYS F 162 N - CA - C ANGL. DEV. = 24.4 DEGREES REMARK 500 ASP F 168 CB - CG - OD1 ANGL. DEV. = 8.3 DEGREES REMARK 500 ASP F 168 CB - CG - OD2 ANGL. DEV. = -11.1 DEGREES REMARK 500 ARG F 172 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 DT G 27 O4' - C1' - N1 ANGL. DEV. = 1.9 DEGREES REMARK 500 DT H 6 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG H 7 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT H 9 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG H 17 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG H 17 O4' - C1' - N9 ANGL. DEV. = 2.6 DEGREES REMARK 500 DA H 18 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 PRO A 152 C - N - CA ANGL. DEV. = -12.2 DEGREES REMARK 500 DT D 6 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG D 7 O4' - C1' - N9 ANGL. DEV. = 2.8 DEGREES REMARK 500 DT D 9 O4' - C1' - N1 ANGL. DEV. = 2.1 DEGREES REMARK 500 DG D 17 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 DG D 17 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DA D 18 O4' - C1' - N9 ANGL. DEV. = 2.1 DEGREES REMARK 500 DC D 19 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE E 25 73.85 -117.47 REMARK 500 MET E 75 -7.33 77.88 REMARK 500 ASN E 120 64.97 -113.27 REMARK 500 GLU E 136 38.58 -97.70 REMARK 500 VAL E 139 34.10 -81.52 REMARK 500 ASP E 145 23.20 -77.72 REMARK 500 PHE E 147 -157.36 -161.46 REMARK 500 ILE E 148 -27.77 58.55 REMARK 500 ALA E 149 72.25 56.64 REMARK 500 ALA E 150 43.11 -86.63 REMARK 500 VAL E 161 28.15 -144.09 REMARK 500 ASP E 164 -31.99 -145.31 REMARK 500 GLU E 166 59.66 -103.83 REMARK 500 ASP E 168 1.02 -61.86 REMARK 500 PHE F 25 73.13 -115.40 REMARK 500 MET F 75 -7.85 75.86 REMARK 500 ASN F 120 63.25 -114.14 REMARK 500 GLU F 136 36.76 -97.63 REMARK 500 VAL F 139 30.00 -78.20 REMARK 500 ASP F 145 33.68 -81.18 REMARK 500 ALA F 146 67.34 -119.63 REMARK 500 PHE F 147 -163.19 -162.10 REMARK 500 ILE F 148 -27.33 57.38 REMARK 500 ALA F 149 73.45 59.37 REMARK 500 ALA F 150 45.28 -87.30 REMARK 500 PRO F 152 73.76 -67.93 REMARK 500 GLN F 159 78.00 -118.56 REMARK 500 VAL F 161 36.32 -141.09 REMARK 500 LYS F 162 -32.81 50.14 REMARK 500 SER F 165 -162.01 132.66 REMARK 500 PHE A 25 73.87 -117.58 REMARK 500 MET A 75 -7.20 77.56 REMARK 500 ASN A 120 65.92 -111.83 REMARK 500 GLU A 136 37.69 -97.75 REMARK 500 VAL A 139 23.23 -79.75 REMARK 500 ASP A 145 -8.08 -53.16 REMARK 500 ALA A 146 72.00 -114.13 REMARK 500 PHE A 147 -151.39 -160.88 REMARK 500 ILE A 148 -30.12 54.03 REMARK 500 ALA A 149 72.07 57.97 REMARK 500 ALA A 150 39.19 -90.46 REMARK 500 VAL A 161 33.83 -144.56 REMARK 500 ASP A 164 -32.19 -142.49 REMARK 500 GLU A 166 61.59 -103.44 REMARK 500 ASP A 168 -7.51 -54.59 REMARK 500 PHE B 25 72.82 -115.87 REMARK 500 MET B 75 -8.09 76.19 REMARK 500 ASN B 120 62.53 -114.53 REMARK 500 GLU B 136 37.34 -97.17 REMARK 500 VAL B 139 27.75 -69.21 REMARK 500 REMARK 500 THIS ENTRY HAS 60 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU E 122 SER E 123 148.66 REMARK 500 ILE E 148 ALA E 149 -139.34 REMARK 500 ILE F 148 ALA F 149 -138.96 REMARK 500 VAL F 161 LYS F 162 123.81 REMARK 500 LYS F 162 GLU F 163 -129.91 REMARK 500 SER F 165 GLU F 166 -126.56 REMARK 500 GLU F 166 LYS F 167 148.61 REMARK 500 HIS F 247 LEU F 248 145.68 REMARK 500 ILE A 148 ALA A 149 -141.46 REMARK 500 ASP B 164 SER B 165 148.55 REMARK 500 LYS B 167 ASP B 168 137.22 REMARK 500 ASP B 168 GLU B 169 137.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4P96 RELATED DB: PDB REMARK 900 4P96 CONTAINS THE SAME PROTEIN IN THE APO FORM. DBREF 4P9U E 6 277 UNP Q9KQU8 FADR_VIBCH 6 277 DBREF 4P9U F 6 277 UNP Q9KQU8 FADR_VIBCH 6 277 DBREF 4P9U G 1 31 PDB 4P9U 4P9U 1 31 DBREF 4P9U H 1 31 PDB 4P9U 4P9U 1 31 DBREF 4P9U A 6 277 UNP Q9KQU8 FADR_VIBCH 6 277 DBREF 4P9U B 6 277 UNP Q9KQU8 FADR_VIBCH 6 277 DBREF 4P9U C 1 31 PDB 4P9U 4P9U 1 31 DBREF 4P9U D 1 31 PDB 4P9U 4P9U 1 31 SEQRES 1 E 272 LYS SER PRO ALA GLY PHE ALA GLU LYS TYR ILE ILE GLU SEQRES 2 E 272 SER ILE TRP ASN GLY ARG PHE PRO PRO GLY SER ILE LEU SEQRES 3 E 272 PRO ALA GLU ARG GLU LEU SER GLU LEU ILE GLY VAL THR SEQRES 4 E 272 ARG THR THR LEU ARG GLU VAL LEU GLN ARG LEU ALA ARG SEQRES 5 E 272 ASP GLY TRP LEU THR ILE GLN HIS GLY LYS PRO THR LYS SEQRES 6 E 272 VAL ASN GLN PHE MET GLU THR SER GLY LEU HIS ILE LEU SEQRES 7 E 272 ASP THR LEU MET THR LEU ASP ALA GLU ASN ALA THR SER SEQRES 8 E 272 ILE VAL GLU ASP LEU LEU ALA ALA ARG THR ASN ILE SER SEQRES 9 E 272 PRO ILE PHE MET ARG TYR ALA PHE LYS LEU ASN LYS GLU SEQRES 10 E 272 SER ALA GLU ARG ILE MET ILE ASN VAL ILE GLU SER CYS SEQRES 11 E 272 GLU ALA LEU VAL ASN ALA PRO SER TRP ASP ALA PHE ILE SEQRES 12 E 272 ALA ALA SER PRO TYR ALA GLU LYS ILE GLN GLN HIS VAL SEQRES 13 E 272 LYS GLU ASP SER GLU LYS ASP GLU LEU LYS ARG GLN GLU SEQRES 14 E 272 ILE LEU ILE ALA LYS THR PHE ASN PHE TYR ASP TYR MET SEQRES 15 E 272 LEU PHE GLN ARG LEU ALA PHE HIS SER GLY ASN GLN ILE SEQRES 16 E 272 TYR GLY LEU ILE PHE ASN GLY LEU LYS LYS LEU TYR ASP SEQRES 17 E 272 ARG VAL GLY SER TYR TYR PHE SER ASN PRO GLN ALA ARG SEQRES 18 E 272 GLU LEU ALA MET GLU PHE TYR ARG GLN LEU LEU ALA VAL SEQRES 19 E 272 CYS GLN SER GLY GLU ARG GLU HIS LEU PRO GLN VAL ILE SEQRES 20 E 272 ARG GLN TYR GLY ILE ALA SER GLY HIS ILE TRP ASN GLN SEQRES 21 E 272 MET LYS MET THR LEU PRO SER ASN PHE THR GLU ASP SEQRES 1 F 272 LYS SER PRO ALA GLY PHE ALA GLU LYS TYR ILE ILE GLU SEQRES 2 F 272 SER ILE TRP ASN GLY ARG PHE PRO PRO GLY SER ILE LEU SEQRES 3 F 272 PRO ALA GLU ARG GLU LEU SER GLU LEU ILE GLY VAL THR SEQRES 4 F 272 ARG THR THR LEU ARG GLU VAL LEU GLN ARG LEU ALA ARG SEQRES 5 F 272 ASP GLY TRP LEU THR ILE GLN HIS GLY LYS PRO THR LYS SEQRES 6 F 272 VAL ASN GLN PHE MET GLU THR SER GLY LEU HIS ILE LEU SEQRES 7 F 272 ASP THR LEU MET THR LEU ASP ALA GLU ASN ALA THR SER SEQRES 8 F 272 ILE VAL GLU ASP LEU LEU ALA ALA ARG THR ASN ILE SER SEQRES 9 F 272 PRO ILE PHE MET ARG TYR ALA PHE LYS LEU ASN LYS GLU SEQRES 10 F 272 SER ALA GLU ARG ILE MET ILE ASN VAL ILE GLU SER CYS SEQRES 11 F 272 GLU ALA LEU VAL ASN ALA PRO SER TRP ASP ALA PHE ILE SEQRES 12 F 272 ALA ALA SER PRO TYR ALA GLU LYS ILE GLN GLN HIS VAL SEQRES 13 F 272 LYS GLU ASP SER GLU LYS ASP GLU LEU LYS ARG GLN GLU SEQRES 14 F 272 ILE LEU ILE ALA LYS THR PHE ASN PHE TYR ASP TYR MET SEQRES 15 F 272 LEU PHE GLN ARG LEU ALA PHE HIS SER GLY ASN GLN ILE SEQRES 16 F 272 TYR GLY LEU ILE PHE ASN GLY LEU LYS LYS LEU TYR ASP SEQRES 17 F 272 ARG VAL GLY SER TYR TYR PHE SER ASN PRO GLN ALA ARG SEQRES 18 F 272 GLU LEU ALA MET GLU PHE TYR ARG GLN LEU LEU ALA VAL SEQRES 19 F 272 CYS GLN SER GLY GLU ARG GLU HIS LEU PRO GLN VAL ILE SEQRES 20 F 272 ARG GLN TYR GLY ILE ALA SER GLY HIS ILE TRP ASN GLN SEQRES 21 F 272 MET LYS MET THR LEU PRO SER ASN PHE THR GLU ASP SEQRES 1 G 31 DC DT DT DA DG DG DC DA DA DC DT DG DG SEQRES 2 G 31 DT DC DA DA DA DC DC DA DG DA DA DC DA SEQRES 3 G 31 DT DA DA DA DA SEQRES 1 H 31 DT DT DT DT DA DT DG DT DT DC DT DG DG SEQRES 2 H 31 DT DT DT DG DA DC DC DA DG DT DT DG DC SEQRES 3 H 31 DC DT DA DA DG SEQRES 1 A 272 LYS SER PRO ALA GLY PHE ALA GLU LYS TYR ILE ILE GLU SEQRES 2 A 272 SER ILE TRP ASN GLY ARG PHE PRO PRO GLY SER ILE LEU SEQRES 3 A 272 PRO ALA GLU ARG GLU LEU SER GLU LEU ILE GLY VAL THR SEQRES 4 A 272 ARG THR THR LEU ARG GLU VAL LEU GLN ARG LEU ALA ARG SEQRES 5 A 272 ASP GLY TRP LEU THR ILE GLN HIS GLY LYS PRO THR LYS SEQRES 6 A 272 VAL ASN GLN PHE MET GLU THR SER GLY LEU HIS ILE LEU SEQRES 7 A 272 ASP THR LEU MET THR LEU ASP ALA GLU ASN ALA THR SER SEQRES 8 A 272 ILE VAL GLU ASP LEU LEU ALA ALA ARG THR ASN ILE SER SEQRES 9 A 272 PRO ILE PHE MET ARG TYR ALA PHE LYS LEU ASN LYS GLU SEQRES 10 A 272 SER ALA GLU ARG ILE MET ILE ASN VAL ILE GLU SER CYS SEQRES 11 A 272 GLU ALA LEU VAL ASN ALA PRO SER TRP ASP ALA PHE ILE SEQRES 12 A 272 ALA ALA SER PRO TYR ALA GLU LYS ILE GLN GLN HIS VAL SEQRES 13 A 272 LYS GLU ASP SER GLU LYS ASP GLU LEU LYS ARG GLN GLU SEQRES 14 A 272 ILE LEU ILE ALA LYS THR PHE ASN PHE TYR ASP TYR MET SEQRES 15 A 272 LEU PHE GLN ARG LEU ALA PHE HIS SER GLY ASN GLN ILE SEQRES 16 A 272 TYR GLY LEU ILE PHE ASN GLY LEU LYS LYS LEU TYR ASP SEQRES 17 A 272 ARG VAL GLY SER TYR TYR PHE SER ASN PRO GLN ALA ARG SEQRES 18 A 272 GLU LEU ALA MET GLU PHE TYR ARG GLN LEU LEU ALA VAL SEQRES 19 A 272 CYS GLN SER GLY GLU ARG GLU HIS LEU PRO GLN VAL ILE SEQRES 20 A 272 ARG GLN TYR GLY ILE ALA SER GLY HIS ILE TRP ASN GLN SEQRES 21 A 272 MET LYS MET THR LEU PRO SER ASN PHE THR GLU ASP SEQRES 1 B 272 LYS SER PRO ALA GLY PHE ALA GLU LYS TYR ILE ILE GLU SEQRES 2 B 272 SER ILE TRP ASN GLY ARG PHE PRO PRO GLY SER ILE LEU SEQRES 3 B 272 PRO ALA GLU ARG GLU LEU SER GLU LEU ILE GLY VAL THR SEQRES 4 B 272 ARG THR THR LEU ARG GLU VAL LEU GLN ARG LEU ALA ARG SEQRES 5 B 272 ASP GLY TRP LEU THR ILE GLN HIS GLY LYS PRO THR LYS SEQRES 6 B 272 VAL ASN GLN PHE MET GLU THR SER GLY LEU HIS ILE LEU SEQRES 7 B 272 ASP THR LEU MET THR LEU ASP ALA GLU ASN ALA THR SER SEQRES 8 B 272 ILE VAL GLU ASP LEU LEU ALA ALA ARG THR ASN ILE SER SEQRES 9 B 272 PRO ILE PHE MET ARG TYR ALA PHE LYS LEU ASN LYS GLU SEQRES 10 B 272 SER ALA GLU ARG ILE MET ILE ASN VAL ILE GLU SER CYS SEQRES 11 B 272 GLU ALA LEU VAL ASN ALA PRO SER TRP ASP ALA PHE ILE SEQRES 12 B 272 ALA ALA SER PRO TYR ALA GLU LYS ILE GLN GLN HIS VAL SEQRES 13 B 272 LYS GLU ASP SER GLU LYS ASP GLU LEU LYS ARG GLN GLU SEQRES 14 B 272 ILE LEU ILE ALA LYS THR PHE ASN PHE TYR ASP TYR MET SEQRES 15 B 272 LEU PHE GLN ARG LEU ALA PHE HIS SER GLY ASN GLN ILE SEQRES 16 B 272 TYR GLY LEU ILE PHE ASN GLY LEU LYS LYS LEU TYR ASP SEQRES 17 B 272 ARG VAL GLY SER TYR TYR PHE SER ASN PRO GLN ALA ARG SEQRES 18 B 272 GLU LEU ALA MET GLU PHE TYR ARG GLN LEU LEU ALA VAL SEQRES 19 B 272 CYS GLN SER GLY GLU ARG GLU HIS LEU PRO GLN VAL ILE SEQRES 20 B 272 ARG GLN TYR GLY ILE ALA SER GLY HIS ILE TRP ASN GLN SEQRES 21 B 272 MET LYS MET THR LEU PRO SER ASN PHE THR GLU ASP SEQRES 1 C 31 DC DT DT DA DG DG DC DA DA DC DT DG DG SEQRES 2 C 31 DT DC DA DA DA DC DC DA DG DA DA DC DA SEQRES 3 C 31 DT DA DA DA DA SEQRES 1 D 31 DT DT DT DT DA DT DG DT DT DC DT DG DG SEQRES 2 D 31 DT DT DT DG DA DC DC DA DG DT DT DG DC SEQRES 3 D 31 DC DT DA DA DG HELIX 1 AA1 SER E 7 ASN E 22 1 16 HELIX 2 AA2 ALA E 33 GLY E 42 1 10 HELIX 3 AA3 THR E 44 GLY E 59 1 16 HELIX 4 AA4 HIS E 81 ASP E 90 1 10 HELIX 5 AA5 ASN E 93 ASN E 120 1 28 HELIX 6 AA6 ASN E 120 CYS E 135 1 16 HELIX 7 AA7 LEU E 170 HIS E 195 1 26 HELIX 8 AA8 ASN E 198 LEU E 208 1 11 HELIX 9 AA9 LEU E 208 PHE E 220 1 13 HELIX 10 AB1 ASN E 222 GLY E 243 1 22 HELIX 11 AB2 HIS E 247 LYS E 267 1 21 HELIX 12 AB3 SER F 7 ASN F 22 1 16 HELIX 13 AB4 ALA F 33 GLY F 42 1 10 HELIX 14 AB5 THR F 44 GLY F 59 1 16 HELIX 15 AB6 HIS F 81 ASP F 90 1 10 HELIX 16 AB7 ASN F 93 ASN F 120 1 28 HELIX 17 AB8 ASN F 120 CYS F 135 1 16 HELIX 18 AB9 LEU F 170 HIS F 195 1 26 HELIX 19 AC1 ASN F 198 LEU F 208 1 11 HELIX 20 AC2 LEU F 208 PHE F 220 1 13 HELIX 21 AC3 ASN F 222 GLY F 243 1 22 HELIX 22 AC4 HIS F 247 LYS F 267 1 21 HELIX 23 AC5 SER A 7 ASN A 22 1 16 HELIX 24 AC6 ALA A 33 GLY A 42 1 10 HELIX 25 AC7 THR A 44 GLY A 59 1 16 HELIX 26 AC8 HIS A 81 ASP A 90 1 10 HELIX 27 AC9 ASN A 93 ASN A 120 1 28 HELIX 28 AD1 ASN A 120 CYS A 135 1 16 HELIX 29 AD2 GLU A 169 HIS A 195 1 27 HELIX 30 AD3 ASN A 198 LEU A 208 1 11 HELIX 31 AD4 LEU A 208 PHE A 220 1 13 HELIX 32 AD5 ASN A 222 GLY A 243 1 22 HELIX 33 AD6 GLU A 244 GLU A 246 5 3 HELIX 34 AD7 HIS A 247 LYS A 267 1 21 HELIX 35 AD8 SER B 7 ASN B 22 1 16 HELIX 36 AD9 ALA B 33 GLY B 42 1 10 HELIX 37 AE1 THR B 44 GLY B 59 1 16 HELIX 38 AE2 HIS B 81 ASP B 90 1 10 HELIX 39 AE3 ASN B 93 ASN B 120 1 28 HELIX 40 AE4 ASN B 120 CYS B 135 1 16 HELIX 41 AE5 LYS B 171 HIS B 195 1 25 HELIX 42 AE6 ASN B 198 LEU B 208 1 11 HELIX 43 AE7 LEU B 208 PHE B 220 1 13 HELIX 44 AE8 ASN B 222 GLY B 243 1 22 HELIX 45 AE9 HIS B 247 LYS B 267 1 21 SHEET 1 AA1 2 LEU E 61 THR E 62 0 SHEET 2 AA1 2 LYS E 70 VAL E 71 -1 O LYS E 70 N THR E 62 SHEET 1 AA2 2 LEU F 61 THR F 62 0 SHEET 2 AA2 2 LYS F 70 VAL F 71 -1 O LYS F 70 N THR F 62 SHEET 1 AA3 2 LEU A 61 THR A 62 0 SHEET 2 AA3 2 LYS A 70 VAL A 71 -1 O LYS A 70 N THR A 62 SHEET 1 AA4 2 LEU B 61 THR B 62 0 SHEET 2 AA4 2 LYS B 70 VAL B 71 -1 O LYS B 70 N THR B 62 CRYST1 84.600 94.700 101.700 89.80 114.60 116.50 P 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011820 0.005893 0.006907 0.00000 SCALE2 0.000000 0.011799 0.002712 0.00000 SCALE3 0.000000 0.000000 0.011096 0.00000