HEADER OXIDOREDUCTASE 08-APR-14 4PAE TITLE CRYSTAL STRUCTURE OF CATALASE-PEROXIDASE (KATG) W78F MUTANT FROM TITLE 2 SYNECHOCOCCUS ELONGATUS PCC7942 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CATALASE-PEROXIDASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CP,PEROXIDASE/CATALASE; COMPND 5 EC: 1.11.1.21; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 1140; SOURCE 4 STRAIN: PCC 7942; SOURCE 5 GENE: KATG, SYNPCC7942_1656; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.KAMACHI,K.WADA,T.TADA REVDAT 3 27-DEC-23 4PAE 1 REMARK REVDAT 2 01-NOV-17 4PAE 1 SOURCE JRNL REMARK REVDAT 1 14-JAN-15 4PAE 0 JRNL AUTH S.KAMACHI,K.HIRABAYASHI,M.TAMOI,S.SHIGEOKA,T.TADA,K.WADA JRNL TITL CRYSTAL STRUCTURE OF THE CATALASE-PEROXIDASE KATG W78F JRNL TITL 2 MUTANT FROM SYNECHOCOCCUS ELONGATUS PCC7942 IN COMPLEX WITH JRNL TITL 3 THE ANTITUBERCULAR PRO-DRUG ISONIAZID. JRNL REF FEBS LETT. V. 589 131 2015 JRNL REFN ISSN 0014-5793 JRNL PMID 25479089 JRNL DOI 10.1016/J.FEBSLET.2014.11.037 REMARK 2 REMARK 2 RESOLUTION. 3.21 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.21 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 19354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1046 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.21 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.29 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1372 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2860 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5555 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 46 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 73.07 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.459 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.306 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 18.389 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.942 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.880 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5761 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5300 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7858 ; 1.525 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12164 ; 0.836 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 706 ; 6.957 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 282 ;36.412 ;24.184 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 895 ;18.521 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 41 ;17.106 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 818 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6684 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1382 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2827 ; 4.723 ; 7.174 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2826 ; 4.712 ; 7.174 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3532 ; 7.328 ;10.757 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3533 ; 7.329 ;10.758 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2934 ; 4.651 ; 7.467 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2935 ; 4.650 ; 7.467 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4327 ; 7.511 ;11.057 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 7016 ;10.825 ;57.625 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 7009 ;10.817 ;57.645 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201019. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL44XU REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.900 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20400 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.206 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15100 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.21 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM FORMATE, PH 6.3, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 102.39400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 53.83650 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 53.83650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.19700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 53.83650 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 53.83650 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 153.59100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 53.83650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.83650 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 51.19700 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 53.83650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.83650 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 153.59100 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 102.39400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER IN SOLUTION CONFIRMED BY SEC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12050 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 48780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -108.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -204.78800 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 3 REMARK 465 THR A 4 REMARK 465 GLN A 5 REMARK 465 GLY A 6 REMARK 465 LYS A 7 REMARK 465 CYS A 8 REMARK 465 PRO A 9 REMARK 465 VAL A 10 REMARK 465 MET A 11 REMARK 465 LEU A 719 REMARK 465 ASP A 720 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO A 123 OG1 THR A 126 2.05 REMARK 500 O ILE A 452 OG SER A 455 2.18 REMARK 500 O THR A 635 O HOH A 946 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ALA A 29 CB - CA - C ANGL. DEV. = -11.5 DEGREES REMARK 500 PRO A 79 C - N - CA ANGL. DEV. = 10.9 DEGREES REMARK 500 ARG A 133 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LYS A 654 N - CA - C ANGL. DEV. = 25.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 15 73.90 -100.13 REMARK 500 ALA A 29 131.50 -39.65 REMARK 500 PHE A 78 74.17 -160.44 REMARK 500 PRO A 79 119.62 -39.51 REMARK 500 ASN A 127 -6.43 69.36 REMARK 500 ASN A 144 -0.83 -57.13 REMARK 500 PHE A 170 139.70 -171.60 REMARK 500 GLU A 181 89.95 -67.85 REMARK 500 GLU A 189 152.05 -49.00 REMARK 500 VAL A 193 43.74 39.07 REMARK 500 ASN A 200 69.19 -106.88 REMARK 500 ASP A 206 41.45 -107.87 REMARK 500 TYR A 222 -63.08 -127.59 REMARK 500 ASN A 271 61.92 -104.12 REMARK 500 GLU A 280 152.64 -46.48 REMARK 500 THR A 307 -72.92 -142.89 REMARK 500 SER A 364 51.00 -101.89 REMARK 500 ARG A 367 -154.75 -116.93 REMARK 500 PRO A 426 102.42 -46.33 REMARK 500 GLN A 427 -29.73 -39.78 REMARK 500 ASP A 434 59.19 30.70 REMARK 500 PRO A 437 156.01 -45.71 REMARK 500 TYR A 443 172.70 173.52 REMARK 500 ASP A 477 17.37 -140.46 REMARK 500 ALA A 485 34.55 36.71 REMARK 500 ARG A 486 -5.29 -57.47 REMARK 500 LYS A 493 7.27 -66.86 REMARK 500 GLU A 499 66.45 60.06 REMARK 500 GLN A 559 45.07 -75.58 REMARK 500 ASN A 618 118.95 -34.14 REMARK 500 VAL A 626 72.18 -101.29 REMARK 500 ARG A 630 49.60 -95.03 REMARK 500 LEU A 634 91.77 -66.15 REMARK 500 LYS A 654 60.67 30.55 REMARK 500 ASN A 665 -5.26 64.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 802 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 105 O REMARK 620 2 GLY A 107 O 76.7 REMARK 620 3 SER A 476 O 72.8 130.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEB A 801 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 263 NE2 REMARK 620 2 HEB A 801 NA 91.4 REMARK 620 3 HEB A 801 NB 85.7 87.4 REMARK 620 4 HEB A 801 NC 87.0 178.1 91.4 REMARK 620 5 HEB A 801 ND 93.6 92.7 179.3 88.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 803 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 264 O REMARK 620 2 THR A 315 OG1 81.6 REMARK 620 3 HIS A 317 O 138.6 88.2 REMARK 620 4 GLN A 320 O 86.4 154.1 85.8 REMARK 620 5 ASP A 322 OD1 104.0 112.5 117.0 92.7 REMARK 620 6 ASP A 322 OD2 144.0 121.5 74.0 80.8 43.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue HEB A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NIZ A 804 DBREF 4PAE A 1 720 UNP Q31MN3 KATG_SYNE7 1 720 SEQADV 4PAE PHE A 78 UNP Q31MN3 TRP 78 ENGINEERED MUTATION SEQRES 1 A 720 MET THR ALA THR GLN GLY LYS CYS PRO VAL MET HIS GLY SEQRES 2 A 720 GLY ALA THR THR VAL ASN ILE SER THR ALA GLU TRP TRP SEQRES 3 A 720 PRO LYS ALA LEU ASN LEU ASP ILE LEU SER GLN HIS ASP SEQRES 4 A 720 ARG LYS THR ASN PRO MET GLY PRO ASP PHE ASN TYR GLN SEQRES 5 A 720 GLU GLU VAL LYS LYS LEU ASP VAL ALA ALA LEU LYS GLN SEQRES 6 A 720 ASP LEU GLN ALA LEU MET THR ASP SER GLN ASP TRP PHE SEQRES 7 A 720 PRO ALA ASP TRP GLY HIS TYR GLY GLY LEU MET ILE ARG SEQRES 8 A 720 LEU THR TRP HIS ALA ALA GLY THR TYR ARG ILE ALA ASP SEQRES 9 A 720 GLY ARG GLY GLY ALA GLY THR GLY ASN GLN ARG PHE ALA SEQRES 10 A 720 PRO LEU ASN SER TRP PRO ASP ASN THR ASN LEU ASP LYS SEQRES 11 A 720 ALA ARG ARG LEU LEU TRP PRO ILE LYS GLN LYS TYR GLY SEQRES 12 A 720 ASN LYS LEU SER TRP ALA ASP LEU ILE ALA TYR ALA GLY SEQRES 13 A 720 THR ILE ALA TYR GLU SER MET GLY LEU LYS THR PHE GLY SEQRES 14 A 720 PHE ALA PHE GLY ARG GLU ASP ILE TRP HIS PRO GLU LYS SEQRES 15 A 720 ASP ILE TYR TRP GLY PRO GLU LYS GLU TRP VAL PRO PRO SEQRES 16 A 720 SER THR ASN PRO ASN SER ARG TYR THR GLY ASP ARG GLU SEQRES 17 A 720 LEU GLU ASN PRO LEU ALA ALA VAL THR MET GLY LEU ILE SEQRES 18 A 720 TYR VAL ASN PRO GLU GLY VAL ASP GLY ASN PRO ASP PRO SEQRES 19 A 720 LEU LYS THR ALA HIS ASP VAL ARG VAL THR PHE ALA ARG SEQRES 20 A 720 MET ALA MET ASN ASP GLU GLU THR VAL ALA LEU THR ALA SEQRES 21 A 720 GLY GLY HIS THR VAL GLY LYS CYS HIS GLY ASN GLY ASN SEQRES 22 A 720 ALA ALA LEU LEU GLY PRO GLU PRO GLU GLY ALA ASP VAL SEQRES 23 A 720 GLU ASP GLN GLY LEU GLY TRP ILE ASN LYS THR GLN SER SEQRES 24 A 720 GLY ILE GLY ARG ASN ALA VAL THR SER GLY LEU GLU GLY SEQRES 25 A 720 ALA TRP THR PRO HIS PRO THR GLN TRP ASP ASN GLY TYR SEQRES 26 A 720 PHE ARG MET LEU LEU ASN TYR ASP TRP GLU LEU LYS LYS SEQRES 27 A 720 SER PRO ALA GLY ALA TRP GLN TRP GLU PRO ILE ASN PRO SEQRES 28 A 720 ARG GLU GLU ASP LEU PRO VAL ASP VAL GLU ASP PRO SER SEQRES 29 A 720 ILE ARG ARG ASN LEU VAL MET THR ASP ALA ASP MET ALA SEQRES 30 A 720 MET LYS MET ASP PRO GLU TYR ARG LYS ILE SER GLU ARG SEQRES 31 A 720 PHE TYR GLN ASP PRO ALA TYR PHE ALA ASP VAL PHE ALA SEQRES 32 A 720 ARG ALA TRP PHE LYS LEU THR HIS ARG ASP MET GLY PRO SEQRES 33 A 720 LYS ALA ARG TYR ILE GLY PRO ASP VAL PRO GLN GLU ASP SEQRES 34 A 720 LEU ILE TRP GLN ASP PRO ILE PRO ALA GLY ASN ARG ASN SEQRES 35 A 720 TYR ASP VAL GLN ALA VAL LYS ASP ARG ILE ALA ALA SER SEQRES 36 A 720 GLY LEU SER ILE SER GLU LEU VAL SER THR ALA TRP ASP SEQRES 37 A 720 SER ALA ARG THR TYR ARG ASN SER ASP LYS ARG GLY GLY SEQRES 38 A 720 ALA ASN GLY ALA ARG ILE ARG LEU ALA PRO GLN LYS ASP SEQRES 39 A 720 TRP GLU GLY ASN GLU PRO ASP ARG LEU ALA LYS VAL LEU SEQRES 40 A 720 ALA VAL LEU GLU GLY ILE ALA ALA ALA THR GLY ALA SER SEQRES 41 A 720 VAL ALA ASP VAL ILE VAL LEU ALA GLY ASN VAL GLY VAL SEQRES 42 A 720 GLU GLN ALA ALA ARG ALA ALA GLY VAL GLU ILE VAL LEU SEQRES 43 A 720 PRO PHE ALA PRO GLY ARG GLY ASP ALA THR ALA GLU GLN SEQRES 44 A 720 THR ASP THR GLU SER PHE ALA VAL LEU GLU PRO ILE HIS SEQRES 45 A 720 ASP GLY TYR ARG ASN TRP LEU LYS GLN ASP TYR ALA ALA SEQRES 46 A 720 THR PRO GLU GLU LEU LEU LEU ASP ARG THR GLN LEU LEU SEQRES 47 A 720 GLY LEU THR ALA PRO GLU MET THR VAL LEU ILE GLY GLY SEQRES 48 A 720 LEU ARG VAL LEU GLY THR ASN HIS GLY GLY THR LYS HIS SEQRES 49 A 720 GLY VAL PHE THR ASP ARG GLU GLY VAL LEU THR ASN ASP SEQRES 50 A 720 PHE PHE VAL ASN LEU THR ASP MET ASN TYR LEU TRP LYS SEQRES 51 A 720 PRO ALA GLY LYS ASN LEU TYR GLU ILE CYS ASP ARG LYS SEQRES 52 A 720 THR ASN GLN VAL LYS TRP THR ALA THR ARG VAL ASP LEU SEQRES 53 A 720 VAL PHE GLY SER ASN SER ILE LEU ARG ALA TYR SER GLU SEQRES 54 A 720 LEU TYR ALA GLN ASP ASP ASN LYS GLU LYS PHE VAL ARG SEQRES 55 A 720 ASP PHE VAL ALA ALA TRP THR LYS VAL MET ASN ALA ASP SEQRES 56 A 720 ARG PHE ASP LEU ASP HET HEB A 801 43 HET NA A 802 1 HET NA A 803 1 HET NIZ A 804 10 HETNAM HEB HEME B/C HETNAM NA SODIUM ION HETNAM NIZ PYRIDINE-4-CARBOHYDRAZIDE HETSYN HEB HYBRID BETWEEN B AND C TYPE HEMES (PROTOPORPHYRIN IX HETSYN 2 HEB CONTAINING FE) HETSYN NIZ ISONICOTINIC ACID HYDRAZID FORMUL 2 HEB C34 H34 FE N4 O4 FORMUL 3 NA 2(NA 1+) FORMUL 5 NIZ C6 H7 N3 O FORMUL 6 HOH *46(H2 O) HELIX 1 AA1 SER A 21 TRP A 25 5 5 HELIX 2 AA2 ASN A 31 LEU A 35 5 5 HELIX 3 AA3 ASN A 50 LYS A 57 1 8 HELIX 4 AA4 ASP A 59 THR A 72 1 14 HELIX 5 AA5 ALA A 80 HIS A 84 5 5 HELIX 6 AA6 TYR A 85 GLY A 98 1 14 HELIX 7 AA7 GLY A 108 PHE A 116 5 9 HELIX 8 AA8 PRO A 118 TRP A 122 5 5 HELIX 9 AA9 ASN A 127 GLY A 143 1 17 HELIX 10 AB1 ASN A 144 LEU A 146 5 3 HELIX 11 AB2 SER A 147 GLY A 164 1 18 HELIX 12 AB3 GLY A 227 ASN A 231 5 5 HELIX 13 AB4 ASP A 233 MET A 248 1 16 HELIX 14 AB5 ASN A 251 THR A 264 1 14 HELIX 15 AB6 ASN A 273 LEU A 277 5 5 HELIX 16 AB7 ASP A 285 GLN A 289 5 5 HELIX 17 AB8 ASN A 323 TYR A 332 1 10 HELIX 18 AB9 THR A 372 ASP A 381 1 10 HELIX 19 AC1 ASP A 381 ASP A 394 1 14 HELIX 20 AC2 ASP A 394 ARG A 412 1 19 HELIX 21 AC3 PRO A 416 TYR A 420 5 5 HELIX 22 AC4 LEU A 430 ASP A 434 5 5 HELIX 23 AC5 ASP A 444 SER A 455 1 12 HELIX 24 AC6 SER A 458 THR A 472 1 15 HELIX 25 AC7 PRO A 491 ASN A 498 5 8 HELIX 26 AC8 GLU A 499 GLY A 518 1 20 HELIX 27 AC9 SER A 520 GLY A 541 1 22 HELIX 28 AD1 ASP A 561 ALA A 566 1 6 HELIX 29 AD2 VAL A 567 GLU A 569 5 3 HELIX 30 AD3 GLY A 574 ASN A 577 5 4 HELIX 31 AD4 THR A 586 GLY A 599 1 14 HELIX 32 AD5 THR A 601 LEU A 615 1 15 HELIX 33 AD6 ASN A 636 THR A 643 1 8 HELIX 34 AD7 THR A 672 ASN A 681 1 10 HELIX 35 AD8 ASN A 681 GLN A 693 1 13 HELIX 36 AD9 ASN A 696 ASN A 713 1 18 SHEET 1 AA1 2 TYR A 203 THR A 204 0 SHEET 2 AA1 2 GLU A 208 LEU A 209 -1 O GLU A 208 N THR A 204 SHEET 1 AA2 2 LYS A 267 CYS A 268 0 SHEET 2 AA2 2 GLY A 312 ALA A 313 -1 O GLY A 312 N CYS A 268 SHEET 1 AA3 2 TRP A 334 LYS A 338 0 SHEET 2 AA3 2 TRP A 344 PRO A 348 -1 O GLU A 347 N GLU A 335 SHEET 1 AA4 2 HIS A 572 ASP A 573 0 SHEET 2 AA4 2 TRP A 578 LEU A 579 -1 O TRP A 578 N ASP A 573 SHEET 1 AA5 3 TYR A 647 PRO A 651 0 SHEET 2 AA5 3 TYR A 657 ASP A 661 -1 O GLU A 658 N LYS A 650 SHEET 3 AA5 3 VAL A 667 ALA A 671 -1 O TRP A 669 N ILE A 659 LINK O GLY A 105 NA NA A 802 1555 1555 2.79 LINK O GLY A 107 NA NA A 802 1555 1555 2.72 LINK NE2 HIS A 263 FE HEB A 801 1555 1555 2.17 LINK O THR A 264 NA NA A 803 1555 1555 2.36 LINK OG1 THR A 315 NA NA A 803 1555 1555 2.90 LINK O HIS A 317 NA NA A 803 1555 1555 2.08 LINK O GLN A 320 NA NA A 803 1555 1555 2.77 LINK OD1 ASP A 322 NA NA A 803 1555 1555 2.79 LINK OD2 ASP A 322 NA NA A 803 1555 1555 3.01 LINK O SER A 476 NA NA A 802 1555 1555 2.28 CISPEP 1 ALA A 117 PRO A 118 0 -7.27 CISPEP 2 ALA A 490 PRO A 491 0 8.13 SITE 1 AC1 19 GLY A 87 LEU A 88 ILE A 90 ARG A 91 SITE 2 AC1 19 TRP A 94 LEU A 258 THR A 259 GLY A 262 SITE 3 AC1 19 HIS A 263 GLY A 266 LYS A 267 CYS A 268 SITE 4 AC1 19 HIS A 269 THR A 307 SER A 308 TRP A 314 SITE 5 AC1 19 TRP A 406 NIZ A 804 HOH A 941 SITE 1 AC2 4 GLY A 105 ARG A 106 GLY A 107 SER A 476 SITE 1 AC3 5 THR A 264 THR A 315 HIS A 317 GLN A 320 SITE 2 AC3 5 ASP A 322 SITE 1 AC4 8 PHE A 78 ALA A 80 ASP A 81 HIS A 84 SITE 2 AC4 8 LEU A 88 HIS A 269 THR A 307 HEB A 801 CRYST1 107.673 107.673 204.788 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009287 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009287 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004883 0.00000