HEADER SOLUTE-BINDING PROTEIN 09-APR-14 4PAI TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 RUEGERIA POMEROYI DSS-3 (SPO1773, TARGET EFI-510260) WITH BOUND 3- TITLE 3 HYDROXYBENZOATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER, DCTP SUBUNIT, PUTATIVE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RUEGERIA POMEROYI; SOURCE 3 ORGANISM_TAXID: 246200; SOURCE 4 STRAIN: DSS-3; SOURCE 5 GENE: SPO1773; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 5 27-DEC-23 4PAI 1 REMARK REVDAT 4 25-DEC-19 4PAI 1 REMARK REVDAT 3 27-SEP-17 4PAI 1 SOURCE JRNL REMARK REVDAT 2 25-FEB-15 4PAI 1 JRNL REVDAT 1 07-MAY-14 4PAI 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 114164 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.145 REMARK 3 FREE R VALUE : 0.165 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 5786 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 21.3401 - 4.3383 0.98 3511 211 0.1406 0.1341 REMARK 3 2 4.3383 - 3.4482 1.00 3604 196 0.1076 0.1258 REMARK 3 3 3.4482 - 3.0137 1.00 3580 241 0.1294 0.1518 REMARK 3 4 3.0137 - 2.7387 1.00 3629 180 0.1298 0.1589 REMARK 3 5 2.7387 - 2.5428 1.00 3616 178 0.1238 0.1592 REMARK 3 6 2.5428 - 2.3931 1.00 3656 163 0.1237 0.1294 REMARK 3 7 2.3931 - 2.2734 1.00 3607 198 0.1170 0.1440 REMARK 3 8 2.2734 - 2.1745 1.00 3623 202 0.1153 0.1438 REMARK 3 9 2.1745 - 2.0909 1.00 3599 196 0.1191 0.1332 REMARK 3 10 2.0909 - 2.0188 1.00 3652 158 0.1258 0.1672 REMARK 3 11 2.0188 - 1.9557 1.00 3646 175 0.1291 0.1548 REMARK 3 12 1.9557 - 1.8998 1.00 3599 194 0.1328 0.1537 REMARK 3 13 1.8998 - 1.8498 1.00 3629 174 0.1393 0.1575 REMARK 3 14 1.8498 - 1.8047 1.00 3658 164 0.1389 0.1772 REMARK 3 15 1.8047 - 1.7637 1.00 3666 178 0.1438 0.1624 REMARK 3 16 1.7637 - 1.7262 1.00 3560 217 0.1507 0.1845 REMARK 3 17 1.7262 - 1.6917 1.00 3576 223 0.1541 0.2014 REMARK 3 18 1.6917 - 1.6598 1.00 3633 203 0.1587 0.1579 REMARK 3 19 1.6598 - 1.6301 1.00 3620 213 0.1737 0.2043 REMARK 3 20 1.6301 - 1.6025 1.00 3554 204 0.1720 0.2003 REMARK 3 21 1.6025 - 1.5767 1.00 3628 170 0.1811 0.1779 REMARK 3 22 1.5767 - 1.5524 1.00 3632 221 0.1809 0.1930 REMARK 3 23 1.5524 - 1.5296 1.00 3616 188 0.1948 0.2175 REMARK 3 24 1.5296 - 1.5081 1.00 3595 202 0.2080 0.2477 REMARK 3 25 1.5081 - 1.4877 1.00 3630 185 0.2233 0.2405 REMARK 3 26 1.4877 - 1.4684 1.00 3602 202 0.2374 0.2548 REMARK 3 27 1.4684 - 1.4500 1.00 3602 185 0.2416 0.2291 REMARK 3 28 1.4500 - 1.4326 1.00 3621 202 0.2404 0.2483 REMARK 3 29 1.4326 - 1.4159 1.00 3660 161 0.2567 0.2773 REMARK 3 30 1.4159 - 1.4000 1.00 3574 202 0.2754 0.3256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 15.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 9.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 2448 REMARK 3 ANGLE : 1.354 3335 REMARK 3 CHIRALITY : 0.083 375 REMARK 3 PLANARITY : 0.008 439 REMARK 3 DIHEDRAL : 13.783 890 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 27 THROUGH 55 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9929 32.6880 -1.3942 REMARK 3 T TENSOR REMARK 3 T11: 0.0733 T22: 0.0441 REMARK 3 T33: 0.0579 T12: 0.0029 REMARK 3 T13: 0.0130 T23: -0.0112 REMARK 3 L TENSOR REMARK 3 L11: 0.0130 L22: 0.0342 REMARK 3 L33: 0.0394 L12: -0.0112 REMARK 3 L13: -0.0027 L23: -0.0024 REMARK 3 S TENSOR REMARK 3 S11: -0.0358 S12: 0.0244 S13: -0.0085 REMARK 3 S21: -0.0496 S22: 0.0268 S23: -0.0163 REMARK 3 S31: 0.0555 S32: -0.0241 S33: 0.0000 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 56 THROUGH 113 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.5222 37.9528 9.3985 REMARK 3 T TENSOR REMARK 3 T11: 0.0209 T22: 0.0187 REMARK 3 T33: 0.0200 T12: 0.0002 REMARK 3 T13: 0.0103 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 0.0698 L22: 0.1125 REMARK 3 L33: 0.2050 L12: 0.0675 REMARK 3 L13: -0.0295 L23: -0.1284 REMARK 3 S TENSOR REMARK 3 S11: -0.0167 S12: -0.0068 S13: -0.0155 REMARK 3 S21: -0.0250 S22: -0.0019 S23: -0.0189 REMARK 3 S31: 0.0169 S32: -0.0199 S33: -0.0175 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 114 THROUGH 137 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0106 37.9222 17.0911 REMARK 3 T TENSOR REMARK 3 T11: 0.0533 T22: 0.0699 REMARK 3 T33: 0.0555 T12: -0.0033 REMARK 3 T13: -0.0006 T23: 0.0096 REMARK 3 L TENSOR REMARK 3 L11: 0.0299 L22: 0.0092 REMARK 3 L33: 0.0093 L12: 0.0151 REMARK 3 L13: 0.0167 L23: 0.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.0129 S12: -0.0032 S13: -0.0325 REMARK 3 S21: 0.0109 S22: -0.0166 S23: -0.0311 REMARK 3 S31: -0.0051 S32: 0.0100 S33: 0.0000 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 174 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.3648 56.0298 8.7159 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.0425 REMARK 3 T33: 0.0505 T12: 0.0013 REMARK 3 T13: 0.0062 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.0721 L22: 0.0329 REMARK 3 L33: 0.1648 L12: 0.0094 REMARK 3 L13: -0.1022 L23: 0.0148 REMARK 3 S TENSOR REMARK 3 S11: 0.0360 S12: -0.0098 S13: 0.0121 REMARK 3 S21: 0.0233 S22: -0.0334 S23: -0.0210 REMARK 3 S31: -0.0383 S32: 0.0097 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 175 THROUGH 201 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.9604 57.3270 9.1827 REMARK 3 T TENSOR REMARK 3 T11: 0.0455 T22: 0.0491 REMARK 3 T33: 0.0619 T12: -0.0015 REMARK 3 T13: 0.0029 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 0.0392 L22: 0.0468 REMARK 3 L33: 0.0057 L12: 0.0262 REMARK 3 L13: 0.0021 L23: -0.0074 REMARK 3 S TENSOR REMARK 3 S11: -0.0215 S12: 0.0198 S13: 0.0032 REMARK 3 S21: 0.0176 S22: 0.0472 S23: 0.0462 REMARK 3 S31: -0.0254 S32: 0.0241 S33: -0.0000 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 202 THROUGH 250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 9.0210 49.6982 4.3197 REMARK 3 T TENSOR REMARK 3 T11: 0.0339 T22: 0.0447 REMARK 3 T33: 0.0452 T12: 0.0041 REMARK 3 T13: -0.0017 T23: 0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.0811 L22: 0.1001 REMARK 3 L33: 0.1810 L12: 0.0126 REMARK 3 L13: -0.0797 L23: 0.0890 REMARK 3 S TENSOR REMARK 3 S11: -0.0068 S12: 0.0212 S13: 0.0023 REMARK 3 S21: -0.0228 S22: 0.0037 S23: 0.0250 REMARK 3 S31: -0.0156 S32: -0.0176 S33: -0.0000 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 251 THROUGH 284 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3508 37.9994 2.3860 REMARK 3 T TENSOR REMARK 3 T11: 0.0562 T22: 0.0526 REMARK 3 T33: 0.0754 T12: 0.0074 REMARK 3 T13: 0.0202 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.1112 L22: 0.0374 REMARK 3 L33: 0.0652 L12: -0.0633 REMARK 3 L13: -0.0537 L23: 0.0209 REMARK 3 S TENSOR REMARK 3 S11: -0.0366 S12: 0.0338 S13: -0.0491 REMARK 3 S21: -0.1071 S22: -0.0146 S23: -0.1244 REMARK 3 S31: 0.0706 S32: 0.0115 S33: -0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 285 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8514 61.3319 12.8364 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.0580 REMARK 3 T33: 0.0414 T12: -0.0114 REMARK 3 T13: 0.0063 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.1127 L22: 0.0803 REMARK 3 L33: 0.0353 L12: -0.0956 REMARK 3 L13: 0.0017 L23: -0.0025 REMARK 3 S TENSOR REMARK 3 S11: 0.0116 S12: 0.0045 S13: 0.0174 REMARK 3 S21: 0.0307 S22: -0.0327 S23: -0.0501 REMARK 3 S31: -0.0760 S32: 0.0313 S33: -0.0005 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 334 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.6848 46.8750 20.5364 REMARK 3 T TENSOR REMARK 3 T11: 0.0704 T22: 0.1012 REMARK 3 T33: 0.0528 T12: -0.0245 REMARK 3 T13: -0.0104 T23: 0.0162 REMARK 3 L TENSOR REMARK 3 L11: 0.0509 L22: 0.0852 REMARK 3 L33: 0.0335 L12: 0.0005 REMARK 3 L13: -0.0107 L23: -0.0512 REMARK 3 S TENSOR REMARK 3 S11: 0.0416 S12: -0.0378 S13: -0.0043 REMARK 3 S21: 0.0576 S22: -0.0273 S23: -0.0355 REMARK 3 S31: -0.1230 S32: 0.1010 S33: 0.0120 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201033. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59822 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 21.340 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.13200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.77200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (67.94 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 10 MM 3-DIHYDROXYBENZOATE); RESERVOIR (0.1 M BIS- REMARK 280 TRIS PROPANE PH 7, 60 %(V/V) TACSIMATE); CRYOPROTECTION (80% REMARK 280 RESERVOIR + 20% GLYCEROL), PH 7.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.39000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.87000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.51000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 37.87000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.39000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.51000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 ILE A 3 REMARK 465 SER A 4 REMARK 465 PHE A 5 REMARK 465 LYS A 6 REMARK 465 GLY A 7 REMARK 465 LEU A 8 REMARK 465 ALA A 9 REMARK 465 ARG A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 ALA A 13 REMARK 465 CYS A 14 REMARK 465 ALA A 15 REMARK 465 ALA A 16 REMARK 465 LEU A 17 REMARK 465 VAL A 18 REMARK 465 LEU A 19 REMARK 465 ALA A 20 REMARK 465 ALA A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 ALA A 24 REMARK 465 ALA A 25 REMARK 465 ALA A 26 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 329 CG CD OE1 OE2 REMARK 470 GLN A 334 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 609 O HOH A 630 1.88 REMARK 500 O HOH A 633 O HOH A 756 2.01 REMARK 500 O HOH A 586 O HOH A 592 2.01 REMARK 500 O HOH A 770 O HOH A 779 2.02 REMARK 500 O HOH A 868 O HOH A 882 2.02 REMARK 500 O HOH A 593 O HOH A 758 2.03 REMARK 500 O HOH A 550 O HOH A 631 2.03 REMARK 500 O HOH A 721 O HOH A 852 2.04 REMARK 500 O ARG A 155 OD2 ASP A 225 2.08 REMARK 500 OD1 ASP A 311 O HOH A 752 2.11 REMARK 500 O HOH A 600 O HOH A 606 2.12 REMARK 500 O HOH A 637 O HOH A 884 2.13 REMARK 500 O HOH A 875 O HOH A 883 2.15 REMARK 500 O CYS A 220 O HOH A 827 2.17 REMARK 500 O HOH A 783 O HOH A 838 2.18 REMARK 500 O HOH A 796 O HOH A 861 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 601 O HOH A 633 4465 2.03 REMARK 500 O HOH A 611 O HOH A 612 4565 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 147 -165.02 -105.46 REMARK 500 ALA A 187 76.57 -119.51 REMARK 500 LEU A 331 37.46 -97.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 805 DISTANCE = 6.45 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 3HB A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510260 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4PAF RELATED DB: PDB REMARK 900 RELATED ID: 4PBH RELATED DB: PDB DBREF 4PAI A 1 327 UNP Q5LSJ5 Q5LSJ5_RUEPO 1 327 SEQADV 4PAI SER A 37 UNP Q5LSJ5 PRO 37 ENGINEERED MUTATION SEQADV 4PAI CYS A 220 UNP Q5LSJ5 TYR 220 ENGINEERED MUTATION SEQADV 4PAI ALA A 328 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAI GLU A 329 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAI ASN A 330 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAI LEU A 331 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAI TYR A 332 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAI PHE A 333 UNP Q5LSJ5 EXPRESSION TAG SEQADV 4PAI GLN A 334 UNP Q5LSJ5 EXPRESSION TAG SEQRES 1 A 334 MSE THR ILE SER PHE LYS GLY LEU ALA ARG GLY VAL ALA SEQRES 2 A 334 CYS ALA ALA LEU VAL LEU ALA ALA LEU PRO ALA ALA ALA SEQRES 3 A 334 LYS GLU PHE ARG LEU GLY LEU ILE THR PRO SER PRO HIS SEQRES 4 A 334 THR TRP THR LYS ALA ALA GLU ALA PHE GLY ALA GLU LEU SEQRES 5 A 334 SER GLU LYS SER GLY GLY ALA HIS SER VAL SER VAL PHE SEQRES 6 A 334 PRO ALA ARG GLN LEU GLY ASN GLU ALA GLN MSE LEU GLN SEQRES 7 A 334 GLN LEU GLN THR GLY ALA LEU ASP MSE ALA PHE MSE THR SEQRES 8 A 334 VAL ALA GLU VAL SER ASN ARG VAL PRO ASN MSE GLY ALA SEQRES 9 A 334 PHE TYR ALA PRO TYR LEU ALA GLY ASP ILE ASN HIS ALA SEQRES 10 A 334 ALA ALA ILE LEU ARG SER ASP THR ALA ARG GLY MSE LEU SEQRES 11 A 334 ALA VAL LEU PRO GLN GLU ALA GLY VAL VAL GLY VAL GLY SEQRES 12 A 334 PHE GLY SER ALA GLY MSE ARG GLN ILE LEU SER ARG GLY SEQRES 13 A 334 ALA VAL ASN SER ALA ALA ASP LEU SER GLY LEU LYS LEU SEQRES 14 A 334 ARG ILE THR PRO PHE ASP PRO ILE LEU ASP PHE TYR ASN SEQRES 15 A 334 ALA LEU GLY ALA ALA PRO THR PRO MSE PRO LEU PRO ALA SEQRES 16 A 334 VAL TYR ASP ALA LEU ALA ASN GLY GLN VAL ASP ALA ILE SEQRES 17 A 334 ASP MSE ASP VAL GLU LEU ILE ASN VAL LEU LYS CYS HIS SEQRES 18 A 334 GLU HIS ALA ASP THR ILE LEU ILE SER ASN HIS MSE MSE SEQRES 19 A 334 PHE PRO MSE VAL GLY LEU ILE SER ALA ARG VAL TYR ALA SEQRES 20 A 334 GLY MSE SER ASP ALA ASP LYS ALA MSE ILE SER GLU LEU SEQRES 21 A 334 MSE ALA LYS HIS VAL ASP SER THR LEU ASP VAL TYR MSE SEQRES 22 A 334 VAL LYS GLU PRO GLU TRP THR ASP ALA LEU THR LYS VAL SEQRES 23 A 334 GLY LYS THR PHE LYS ARG VAL ASP GLN SER PHE PHE GLY SEQRES 24 A 334 ASP ALA ILE ALA GLN TRP GLU THR ILE TRP ALA ASP LYS SEQRES 25 A 334 ALA PRO SER LEU PRO GLU LEU ARG LYS THR ALA ALA ASP SEQRES 26 A 334 LEU GLN ALA GLU ASN LEU TYR PHE GLN MODRES 4PAI MSE A 76 MET MODIFIED RESIDUE MODRES 4PAI MSE A 87 MET MODIFIED RESIDUE MODRES 4PAI MSE A 90 MET MODIFIED RESIDUE MODRES 4PAI MSE A 102 MET MODIFIED RESIDUE MODRES 4PAI MSE A 129 MET MODIFIED RESIDUE MODRES 4PAI MSE A 149 MET MODIFIED RESIDUE MODRES 4PAI MSE A 191 MET MODIFIED RESIDUE MODRES 4PAI MSE A 210 MET MODIFIED RESIDUE MODRES 4PAI MSE A 233 MET MODIFIED RESIDUE MODRES 4PAI MSE A 234 MET MODIFIED RESIDUE MODRES 4PAI MSE A 237 MET MODIFIED RESIDUE MODRES 4PAI MSE A 249 MET MODIFIED RESIDUE MODRES 4PAI MSE A 256 MET MODIFIED RESIDUE MODRES 4PAI MSE A 261 MET MODIFIED RESIDUE MODRES 4PAI MSE A 273 MET MODIFIED RESIDUE HET MSE A 76 17 HET MSE A 87 17 HET MSE A 90 17 HET MSE A 102 17 HET MSE A 129 17 HET MSE A 149 17 HET MSE A 191 17 HET MSE A 210 34 HET MSE A 233 17 HET MSE A 234 17 HET MSE A 237 17 HET MSE A 249 17 HET MSE A 256 17 HET MSE A 261 17 HET MSE A 273 17 HET 3HB A 401 15 HETNAM MSE SELENOMETHIONINE HETNAM 3HB 3-HYDROXYBENZOIC ACID FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 2 3HB C7 H6 O3 FORMUL 3 HOH *395(H2 O) HELIX 1 AA1 HIS A 39 SER A 56 1 18 HELIX 2 AA2 ASN A 72 GLY A 83 1 12 HELIX 3 AA3 VAL A 92 VAL A 99 1 8 HELIX 4 AA4 PRO A 100 ALA A 107 5 8 HELIX 5 AA5 ASP A 113 SER A 123 1 11 HELIX 6 AA6 SER A 123 LEU A 130 1 8 HELIX 7 AA7 VAL A 132 GLY A 138 1 7 HELIX 8 AA8 SER A 160 SER A 165 5 6 HELIX 9 AA9 PHE A 174 GLY A 185 1 12 HELIX 10 AB1 PRO A 192 PRO A 194 5 3 HELIX 11 AB2 ALA A 195 ASN A 202 1 8 HELIX 12 AB3 ASP A 211 LEU A 218 1 8 HELIX 13 AB4 LYS A 219 ALA A 224 5 6 HELIX 14 AB5 ALA A 243 GLY A 248 1 6 HELIX 15 AB6 SER A 250 LEU A 283 1 34 HELIX 16 AB7 ASP A 294 GLY A 299 5 6 HELIX 17 AB8 ASP A 300 ALA A 310 1 11 HELIX 18 AB9 SER A 315 GLU A 329 1 15 SHEET 1 AA1 5 SER A 61 PHE A 65 0 SHEET 2 AA1 5 GLU A 28 GLY A 32 1 N LEU A 31 O PHE A 65 SHEET 3 AA1 5 MSE A 87 THR A 91 1 O MSE A 87 N GLY A 32 SHEET 4 AA1 5 PRO A 236 SER A 242 -1 O LEU A 240 N ALA A 88 SHEET 5 AA1 5 VAL A 139 SER A 146 -1 N VAL A 140 O ILE A 241 SHEET 1 AA2 6 ALA A 187 PRO A 190 0 SHEET 2 AA2 6 LYS A 168 ILE A 171 1 N LEU A 169 O THR A 189 SHEET 3 AA2 6 ALA A 207 MSE A 210 1 O ALA A 207 N ARG A 170 SHEET 4 AA2 6 GLN A 151 SER A 154 -1 N LEU A 153 O ILE A 208 SHEET 5 AA2 6 THR A 226 ILE A 229 -1 O LEU A 228 N ILE A 152 SHEET 6 AA2 6 THR A 289 ARG A 292 1 O THR A 289 N ILE A 227 LINK C GLN A 75 N MSE A 76 1555 1555 1.32 LINK C MSE A 76 N LEU A 77 1555 1555 1.32 LINK C ASP A 86 N MSE A 87 1555 1555 1.32 LINK C MSE A 87 N ALA A 88 1555 1555 1.33 LINK C PHE A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N THR A 91 1555 1555 1.32 LINK C ASN A 101 N MSE A 102 1555 1555 1.34 LINK C MSE A 102 N GLY A 103 1555 1555 1.33 LINK C GLY A 128 N MSE A 129 1555 1555 1.33 LINK C MSE A 129 N LEU A 130 1555 1555 1.33 LINK C GLY A 148 N MSE A 149 1555 1555 1.33 LINK C MSE A 149 N ARG A 150 1555 1555 1.33 LINK C PRO A 190 N MSE A 191 1555 1555 1.33 LINK C MSE A 191 N PRO A 192 1555 1555 1.33 LINK C ASP A 209 N AMSE A 210 1555 1555 1.33 LINK C ASP A 209 N BMSE A 210 1555 1555 1.33 LINK C AMSE A 210 N ASP A 211 1555 1555 1.32 LINK C BMSE A 210 N ASP A 211 1555 1555 1.32 LINK C HIS A 232 N MSE A 233 1555 1555 1.33 LINK C MSE A 233 N MSE A 234 1555 1555 1.32 LINK C MSE A 234 N PHE A 235 1555 1555 1.33 LINK C PRO A 236 N MSE A 237 1555 1555 1.33 LINK C MSE A 237 N VAL A 238 1555 1555 1.33 LINK C GLY A 248 N MSE A 249 1555 1555 1.33 LINK C MSE A 249 N SER A 250 1555 1555 1.33 LINK C ALA A 255 N MSE A 256 1555 1555 1.33 LINK C MSE A 256 N ILE A 257 1555 1555 1.33 LINK C LEU A 260 N MSE A 261 1555 1555 1.33 LINK C MSE A 261 N ALA A 262 1555 1555 1.33 LINK C TYR A 272 N MSE A 273 1555 1555 1.33 LINK C MSE A 273 N VAL A 274 1555 1555 1.32 SITE 1 AC1 12 THR A 35 HIS A 39 THR A 91 ALA A 147 SITE 2 AC1 12 ARG A 150 ARG A 170 THR A 172 LEU A 193 SITE 3 AC1 12 ASP A 211 LEU A 214 PHE A 235 HOH A 667 CRYST1 62.780 63.020 75.740 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015929 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013203 0.00000