HEADER TRANSFERASE 12-APR-14 4PBC TITLE X-RAY CRYSTAL STRUCTURE OF A PUTATIVE D-AMINO ACID AMINOTRANSFERASE TITLE 2 FROM BURKHOLDERIA CENOCEPACIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINO ACID AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CENOCEPACIA; SOURCE 3 ORGANISM_TAXID: 216591; SOURCE 4 STRAIN: ATCC BAA-245 / DSM 16553 / LMG 16656 / NCTC 13227 / J2315 / SOURCE 5 CF5610; SOURCE 6 GENE: BCAL0705; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE D-AMINO ACID BURKHOLDERIA CENOCEPACIA, STRUCTURAL KEYWDS 2 GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 3 SSGCID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.W.FAIRMAN,J.ABENDROTH,T.E.EDWARDS,D.LORIMER,SEATTLE STRUCTURAL AUTHOR 2 GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 5 27-DEC-23 4PBC 1 REMARK REVDAT 4 11-DEC-19 4PBC 1 REMARK REVDAT 3 22-NOV-17 4PBC 1 REMARK REVDAT 2 13-SEP-17 4PBC 1 SOURCE KEYWDS JRNL REMARK REVDAT 1 02-JUL-14 4PBC 0 JRNL AUTH J.W.FAIRMAN,J.ABENDROTH,T.E.EDWARDS,D.LORIMER JRNL TITL X-RAY CRYSTAL STRUCTURE OF A PUTATIVE D-AMINO ACID JRNL TITL 2 AMINOTRANSFERASE FROM BURKHOLDERIA CENOCEPACIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9PRE_1665) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.77 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 63931 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.850 REMARK 3 FREE R VALUE TEST SET COUNT : 3101 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.7888 - 5.0418 0.93 2839 155 0.1784 0.1753 REMARK 3 2 5.0418 - 4.0024 0.97 2801 149 0.1398 0.1770 REMARK 3 3 4.0024 - 3.4966 0.98 2842 149 0.1618 0.1856 REMARK 3 4 3.4966 - 3.1770 0.99 2818 141 0.1745 0.2344 REMARK 3 5 3.1770 - 2.9493 0.99 2771 149 0.1763 0.2116 REMARK 3 6 2.9493 - 2.7754 0.99 2832 125 0.1834 0.2430 REMARK 3 7 2.7754 - 2.6364 0.99 2805 140 0.1779 0.2538 REMARK 3 8 2.6364 - 2.5217 0.99 2747 158 0.1740 0.2210 REMARK 3 9 2.5217 - 2.4246 0.99 2772 131 0.1720 0.2316 REMARK 3 10 2.4246 - 2.3410 0.99 2768 139 0.1670 0.2200 REMARK 3 11 2.3410 - 2.2678 0.98 2786 141 0.1631 0.2114 REMARK 3 12 2.2678 - 2.2029 0.98 2731 129 0.1493 0.1908 REMARK 3 13 2.2029 - 2.1449 0.98 2785 121 0.1572 0.1823 REMARK 3 14 2.1449 - 2.0926 0.98 2717 155 0.1530 0.2156 REMARK 3 15 2.0926 - 2.0450 0.98 2767 136 0.1522 0.2006 REMARK 3 16 2.0450 - 2.0015 0.98 2684 149 0.1665 0.2155 REMARK 3 17 2.0015 - 1.9615 0.98 2754 162 0.1693 0.2171 REMARK 3 18 1.9615 - 1.9245 0.98 2700 142 0.1695 0.2406 REMARK 3 19 1.9245 - 1.8901 0.98 2743 135 0.1787 0.2201 REMARK 3 20 1.8901 - 1.8580 0.98 2730 126 0.1823 0.2178 REMARK 3 21 1.8580 - 1.8281 0.98 2720 133 0.1984 0.2509 REMARK 3 22 1.8281 - 1.8000 0.98 2718 136 0.2183 0.2626 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 4441 REMARK 3 ANGLE : 1.661 6060 REMARK 3 CHIRALITY : 0.101 703 REMARK 3 PLANARITY : 0.009 806 REMARK 3 DIHEDRAL : 12.197 1597 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 15 THROUGH 129 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5230 70.0925 26.9439 REMARK 3 T TENSOR REMARK 3 T11: 0.1776 T22: 0.2015 REMARK 3 T33: 0.1953 T12: 0.0571 REMARK 3 T13: 0.0089 T23: 0.0366 REMARK 3 L TENSOR REMARK 3 L11: 1.3603 L22: 2.0522 REMARK 3 L33: 3.0082 L12: -0.0265 REMARK 3 L13: -0.5787 L23: 0.2571 REMARK 3 S TENSOR REMARK 3 S11: 0.1407 S12: 0.1929 S13: 0.0361 REMARK 3 S21: -0.2261 S22: -0.0566 S23: -0.0159 REMARK 3 S31: -0.3409 S32: -0.3002 S33: -0.0934 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 130 THROUGH 154 ) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4316 67.1415 25.3475 REMARK 3 T TENSOR REMARK 3 T11: 0.1331 T22: 0.2077 REMARK 3 T33: 0.1816 T12: 0.0204 REMARK 3 T13: -0.0330 T23: -0.0309 REMARK 3 L TENSOR REMARK 3 L11: 0.5366 L22: 2.4033 REMARK 3 L33: 1.7244 L12: -0.4172 REMARK 3 L13: 0.2957 L23: -0.3463 REMARK 3 S TENSOR REMARK 3 S11: 0.2417 S12: -0.0217 S13: -0.0486 REMARK 3 S21: -0.0104 S22: -0.0531 S23: -0.0645 REMARK 3 S31: -0.3601 S32: 0.1825 S33: -0.0883 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 155 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 42.2130 53.1949 38.9678 REMARK 3 T TENSOR REMARK 3 T11: 0.2888 T22: 0.3175 REMARK 3 T33: 0.2827 T12: 0.0794 REMARK 3 T13: -0.0586 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 3.9257 L22: 2.9430 REMARK 3 L33: 3.7744 L12: -3.3988 REMARK 3 L13: -3.8131 L23: 3.3120 REMARK 3 S TENSOR REMARK 3 S11: -0.4258 S12: -0.1706 S13: -0.2209 REMARK 3 S21: 0.4281 S22: 0.2286 S23: 0.1214 REMARK 3 S31: 0.7620 S32: 0.5962 S33: 0.1949 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 177 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.9628 47.4509 60.5758 REMARK 3 T TENSOR REMARK 3 T11: 0.1510 T22: 0.1890 REMARK 3 T33: 0.1937 T12: -0.0201 REMARK 3 T13: 0.0072 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.8585 L22: 1.7325 REMARK 3 L33: 2.9567 L12: 0.2225 REMARK 3 L13: -0.1309 L23: -0.2168 REMARK 3 S TENSOR REMARK 3 S11: -0.0692 S12: 0.0491 S13: -0.0875 REMARK 3 S21: 0.0835 S22: 0.1528 S23: -0.0576 REMARK 3 S31: 0.0585 S32: 0.0670 S33: -0.0940 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 14 THROUGH 176 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.6672 67.5418 53.1970 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.1662 REMARK 3 T33: 0.2113 T12: -0.0040 REMARK 3 T13: -0.0051 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.8371 L22: 1.3372 REMARK 3 L33: 2.3742 L12: 0.2158 REMARK 3 L13: -0.6688 L23: -0.5189 REMARK 3 S TENSOR REMARK 3 S11: 0.1417 S12: -0.0501 S13: 0.1069 REMARK 3 S21: 0.2409 S22: -0.0127 S23: -0.0054 REMARK 3 S31: -0.3442 S32: 0.0751 S33: -0.1238 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 177 THROUGH 314 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.8838 50.6977 20.0684 REMARK 3 T TENSOR REMARK 3 T11: 0.1778 T22: 0.2070 REMARK 3 T33: 0.2091 T12: 0.0217 REMARK 3 T13: 0.0091 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 1.0455 L22: 1.7521 REMARK 3 L33: 3.8851 L12: -0.2490 REMARK 3 L13: -0.0758 L23: 0.0430 REMARK 3 S TENSOR REMARK 3 S11: 0.0543 S12: 0.0183 S13: -0.1001 REMARK 3 S21: -0.1701 S22: 0.0754 S23: -0.0920 REMARK 3 S31: 0.4479 S32: 0.0625 S33: -0.1020 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PBC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201102. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63970 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 5.210 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.390 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 400 NL PROTEIN SOLUTION + 400 NL REMARK 280 PRECIPITANT SOLUTION. PRECIPITANT WAS JCSG+ WELL H3 - 0.1 M BIS- REMARK 280 TRIS PH 5.50, 25% PEG3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.04000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 76.11000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.48500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 76.11000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.04000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.48500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10290 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 MET A 9 REMARK 465 SER A 10 REMARK 465 GLN A 11 REMARK 465 ALA A 12 REMARK 465 GLU A 13 REMARK 465 PHE A 14 REMARK 465 ARG A 165 REMARK 465 TRP A 166 REMARK 465 LEU A 167 REMARK 465 HIS A 168 REMARK 465 SER A 224 REMARK 465 ASN A 225 REMARK 465 LYS A 226 REMARK 465 ILE A 227 REMARK 465 LEU A 228 REMARK 465 GLU A 229 REMARK 465 GLY A 230 REMARK 465 ILE A 231 REMARK 465 ARG A 315 REMARK 465 LYS A 316 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 HIS B 3 REMARK 465 HIS B 4 REMARK 465 HIS B 5 REMARK 465 HIS B 6 REMARK 465 HIS B 7 REMARK 465 HIS B 8 REMARK 465 MET B 9 REMARK 465 SER B 10 REMARK 465 GLN B 11 REMARK 465 ALA B 12 REMARK 465 GLU B 13 REMARK 465 ARG B 165 REMARK 465 TRP B 166 REMARK 465 LEU B 167 REMARK 465 HIS B 168 REMARK 465 CYS B 169 REMARK 465 SER B 224 REMARK 465 ASN B 225 REMARK 465 LYS B 226 REMARK 465 ILE B 227 REMARK 465 LEU B 228 REMARK 465 GLU B 229 REMARK 465 GLY B 230 REMARK 465 ILE B 231 REMARK 465 ARG B 232 REMARK 465 ARG B 315 REMARK 465 LYS B 316 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 79 CG CD CE NZ REMARK 470 LYS A 80 CG CD CE NZ REMARK 470 GLU A 97 CG CD OE1 OE2 REMARK 470 GLU A 105 CG CD OE1 OE2 REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 ASN A 132 CG OD1 ND2 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 149 CG CD OE1 OE2 REMARK 470 GLU A 150 CG CD OE1 OE2 REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 ARG A 164 CG CD NE CZ NH1 NH2 REMARK 470 CYS A 169 SG REMARK 470 ARG A 198 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 223 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 232 CG CD NE CZ NH1 NH2 REMARK 470 TYR A 233 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 80 CG CD CE NZ REMARK 470 GLU B 97 CG CD OE1 OE2 REMARK 470 GLU B 105 CG CD OE1 OE2 REMARK 470 LYS B 124 CG CD CE NZ REMARK 470 ARG B 145 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 149 CG CD OE1 OE2 REMARK 470 GLU B 150 CG CD OE1 OE2 REMARK 470 LYS B 154 CG CD CE NZ REMARK 470 ARG B 164 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 170 CG OD1 OD2 REMARK 470 ARG B 223 CG CD NE CZ NH1 NH2 REMARK 470 TYR B 233 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LYS B 287 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 594 O HOH B 546 1.95 REMARK 500 OE2 GLU B 306 O HOH B 591 2.12 REMARK 500 O HOH B 585 O HOH B 656 2.13 REMARK 500 O HOH A 610 O HOH A 639 2.16 REMARK 500 OE1 GLN B 238 O HOH B 658 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR B 56 CE2 TYR B 56 CD2 0.090 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 86 C - N - CA ANGL. DEV. = 10.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 132 44.17 -100.43 REMARK 500 THR A 203 -86.04 -107.51 REMARK 500 SER A 207 32.98 -150.22 REMARK 500 TYR A 233 124.04 160.70 REMARK 500 GLU A 271 -113.52 54.03 REMARK 500 GLN A 284 -117.25 52.64 REMARK 500 ASN B 132 47.57 38.20 REMARK 500 THR B 203 -85.64 -105.05 REMARK 500 SER B 207 34.35 -149.67 REMARK 500 GLU B 271 -113.31 54.98 REMARK 500 GLN B 284 -117.01 50.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUCEA.10478.A RELATED DB: TARGETTRACK REMARK 900 RELATED ID: BUCEA.10478.A RELATED DB: TARGETTRACK DBREF 4PBC A 9 316 UNP B4E9Q5 B4E9Q5_BURCJ 1 308 DBREF 4PBC B 9 316 UNP B4E9Q5 B4E9Q5_BURCJ 1 308 SEQADV 4PBC MET A 1 UNP B4E9Q5 INITIATING METHIONINE SEQADV 4PBC ALA A 2 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS A 3 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS A 4 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS A 5 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS A 6 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS A 7 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS A 8 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC MET B 1 UNP B4E9Q5 INITIATING METHIONINE SEQADV 4PBC ALA B 2 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS B 3 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS B 4 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS B 5 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS B 6 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS B 7 UNP B4E9Q5 EXPRESSION TAG SEQADV 4PBC HIS B 8 UNP B4E9Q5 EXPRESSION TAG SEQRES 1 A 316 MET ALA HIS HIS HIS HIS HIS HIS MET SER GLN ALA GLU SEQRES 2 A 316 PHE GLU PRO ILE VAL TYR LEU SER VAL SER ALA GLN GLU SEQRES 3 A 316 GLU LEU VAL PRO LEU SER GLU ALA ARG VAL PRO VAL LEU SEQRES 4 A 316 ASP ARG GLY PHE ILE PHE GLY ASP GLY VAL TYR GLU VAL SEQRES 5 A 316 VAL PRO VAL TYR ALA HIS ASP GLY ALA HIS VAL PRO PHE SEQRES 6 A 316 ARG ILE GLU GLN HIS LEU ASP ARG LEU ALA ARG SER LEU SEQRES 7 A 316 LYS LYS ILE GLY ILE ASP ASN PRO HIS ASP ALA ALA GLY SEQRES 8 A 316 TRP ARG ALA LEU ILE GLU ARG VAL VAL ALA ALA ASN ALA SEQRES 9 A 316 GLU GLY LEU GLY ASP GLY ASN ALA LEU VAL TYR LEU GLN SEQRES 10 A 316 VAL THR ARG GLY VAL ALA LYS ARG GLY HIS ALA PHE PRO SEQRES 11 A 316 ALA ASN ALA VAL PRO THR VAL PHE ALA MET THR SER PRO SEQRES 12 A 316 LEU ARG LEU PRO SER GLU GLU GLU ARG ALA LYS GLY VAL SEQRES 13 A 316 ARG CYS VAL THR ALA GLU ASP ARG ARG TRP LEU HIS CYS SEQRES 14 A 316 ASP ILE LYS SER ILE SER LEU LEU GLY ASN VAL LEU MET SEQRES 15 A 316 ALA GLN HIS ALA ALA GLU ARG ASP ALA PHE GLU THR ILE SEQRES 16 A 316 GLN LEU ARG ASP GLU ASN VAL THR GLU GLY SER SER SER SEQRES 17 A 316 ASN VAL TRP ILE VAL LYS ASN GLY GLU LEU PHE ALA PRO SEQRES 18 A 316 PRO ARG SER ASN LYS ILE LEU GLU GLY ILE ARG TYR ALA SEQRES 19 A 316 LEU VAL GLU GLN LEU ALA ASP GLU CYS GLY ILE ARG PHE SEQRES 20 A 316 VAL ALA ARG GLU ILE SER GLU VAL GLU LEU ARG SER ALA SEQRES 21 A 316 ASP GLU ILE MET LEU THR SER ALA THR LYS GLU ILE LEU SEQRES 22 A 316 PRO VAL THR SER LEU ASP ASP LEU PRO VAL GLN GLY GLY SEQRES 23 A 316 LYS PRO GLY PRO VAL PHE ALA ALA LEU TYR ASP ALA TYR SEQRES 24 A 316 GLN ARG ALA LYS ALA ARG GLU PHE GLU GLN PHE ASP LEU SEQRES 25 A 316 THR ARG ARG LYS SEQRES 1 B 316 MET ALA HIS HIS HIS HIS HIS HIS MET SER GLN ALA GLU SEQRES 2 B 316 PHE GLU PRO ILE VAL TYR LEU SER VAL SER ALA GLN GLU SEQRES 3 B 316 GLU LEU VAL PRO LEU SER GLU ALA ARG VAL PRO VAL LEU SEQRES 4 B 316 ASP ARG GLY PHE ILE PHE GLY ASP GLY VAL TYR GLU VAL SEQRES 5 B 316 VAL PRO VAL TYR ALA HIS ASP GLY ALA HIS VAL PRO PHE SEQRES 6 B 316 ARG ILE GLU GLN HIS LEU ASP ARG LEU ALA ARG SER LEU SEQRES 7 B 316 LYS LYS ILE GLY ILE ASP ASN PRO HIS ASP ALA ALA GLY SEQRES 8 B 316 TRP ARG ALA LEU ILE GLU ARG VAL VAL ALA ALA ASN ALA SEQRES 9 B 316 GLU GLY LEU GLY ASP GLY ASN ALA LEU VAL TYR LEU GLN SEQRES 10 B 316 VAL THR ARG GLY VAL ALA LYS ARG GLY HIS ALA PHE PRO SEQRES 11 B 316 ALA ASN ALA VAL PRO THR VAL PHE ALA MET THR SER PRO SEQRES 12 B 316 LEU ARG LEU PRO SER GLU GLU GLU ARG ALA LYS GLY VAL SEQRES 13 B 316 ARG CYS VAL THR ALA GLU ASP ARG ARG TRP LEU HIS CYS SEQRES 14 B 316 ASP ILE LYS SER ILE SER LEU LEU GLY ASN VAL LEU MET SEQRES 15 B 316 ALA GLN HIS ALA ALA GLU ARG ASP ALA PHE GLU THR ILE SEQRES 16 B 316 GLN LEU ARG ASP GLU ASN VAL THR GLU GLY SER SER SER SEQRES 17 B 316 ASN VAL TRP ILE VAL LYS ASN GLY GLU LEU PHE ALA PRO SEQRES 18 B 316 PRO ARG SER ASN LYS ILE LEU GLU GLY ILE ARG TYR ALA SEQRES 19 B 316 LEU VAL GLU GLN LEU ALA ASP GLU CYS GLY ILE ARG PHE SEQRES 20 B 316 VAL ALA ARG GLU ILE SER GLU VAL GLU LEU ARG SER ALA SEQRES 21 B 316 ASP GLU ILE MET LEU THR SER ALA THR LYS GLU ILE LEU SEQRES 22 B 316 PRO VAL THR SER LEU ASP ASP LEU PRO VAL GLN GLY GLY SEQRES 23 B 316 LYS PRO GLY PRO VAL PHE ALA ALA LEU TYR ASP ALA TYR SEQRES 24 B 316 GLN ARG ALA LYS ALA ARG GLU PHE GLU GLN PHE ASP LEU SEQRES 25 B 316 THR ARG ARG LYS HET PO4 A 401 5 HET PO4 B 401 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *409(H2 O) HELIX 1 AA1 ASP A 40 PHE A 45 1 6 HELIX 2 AA2 ARG A 66 ILE A 81 1 16 HELIX 3 AA3 ASP A 88 ASN A 103 1 16 HELIX 4 AA4 ASN A 103 GLY A 108 1 6 HELIX 5 AA5 SER A 148 GLY A 155 1 8 HELIX 6 AA6 LEU A 176 ARG A 189 1 14 HELIX 7 AA7 TYR A 233 GLY A 244 1 12 HELIX 8 AA8 SER A 253 ARG A 258 1 6 HELIX 9 AA9 GLY A 289 ARG A 314 1 26 HELIX 10 AB1 ASP B 40 PHE B 45 1 6 HELIX 11 AB2 ARG B 66 ILE B 81 1 16 HELIX 12 AB3 ASP B 88 ASN B 103 1 16 HELIX 13 AB4 ASN B 103 GLY B 108 1 6 HELIX 14 AB5 SER B 148 GLY B 155 1 8 HELIX 15 AB6 LEU B 176 ARG B 189 1 14 HELIX 16 AB7 ALA B 234 GLY B 244 1 11 HELIX 17 AB8 SER B 253 SER B 259 1 7 HELIX 18 AB9 GLY B 289 THR B 313 1 25 SHEET 1 AA1 6 GLN A 25 PRO A 30 0 SHEET 2 AA1 6 ILE A 17 VAL A 22 -1 N VAL A 18 O VAL A 29 SHEET 3 AA1 6 THR A 136 PRO A 143 -1 O VAL A 137 N SER A 21 SHEET 4 AA1 6 ALA A 112 THR A 119 -1 N TYR A 115 O MET A 140 SHEET 5 AA1 6 GLY A 48 HIS A 58 -1 N VAL A 55 O ALA A 112 SHEET 6 AA1 6 ALA A 61 PRO A 64 -1 O VAL A 63 N TYR A 56 SHEET 1 AA2 2 ARG A 35 PRO A 37 0 SHEET 2 AA2 2 ARG B 35 PRO B 37 -1 O VAL B 36 N VAL A 36 SHEET 1 AA3 8 ASN B 201 GLY B 205 0 SHEET 2 AA3 8 GLU B 193 ARG B 198 -1 N ARG B 198 O ASN B 201 SHEET 3 AA3 8 VAL A 156 GLU A 162 1 N VAL A 159 O ILE B 195 SHEET 4 AA3 8 GLU B 271 LEU B 278 1 O SER B 277 N CYS A 158 SHEET 5 AA3 8 GLU B 262 SER B 267 -1 N ILE B 263 O VAL B 275 SHEET 6 AA3 8 ASN B 209 LYS B 214 -1 N ASN B 209 O THR B 266 SHEET 7 AA3 8 GLU B 217 ALA B 220 -1 O PHE B 219 N ILE B 212 SHEET 8 AA3 8 PHE B 247 ALA B 249 1 O VAL B 248 N LEU B 218 SHEET 1 AA4 5 ASN B 201 GLY B 205 0 SHEET 2 AA4 5 GLU B 193 ARG B 198 -1 N ARG B 198 O ASN B 201 SHEET 3 AA4 5 VAL A 156 GLU A 162 1 N VAL A 159 O ILE B 195 SHEET 4 AA4 5 GLU B 271 LEU B 278 1 O SER B 277 N CYS A 158 SHEET 5 AA4 5 LEU B 281 PRO B 282 -1 O LEU B 281 N LEU B 278 SHEET 1 AA5 8 ASN A 201 GLY A 205 0 SHEET 2 AA5 8 GLU A 193 ARG A 198 -1 N GLN A 196 O THR A 203 SHEET 3 AA5 8 VAL B 156 GLU B 162 1 O VAL B 159 N ILE A 195 SHEET 4 AA5 8 GLU A 271 LEU A 278 1 N SER A 277 O CYS B 158 SHEET 5 AA5 8 GLU A 262 SER A 267 -1 N ILE A 263 O VAL A 275 SHEET 6 AA5 8 ASN A 209 LYS A 214 -1 N TRP A 211 O MET A 264 SHEET 7 AA5 8 GLU A 217 ALA A 220 -1 O PHE A 219 N ILE A 212 SHEET 8 AA5 8 PHE A 247 ALA A 249 1 O VAL A 248 N LEU A 218 SHEET 1 AA6 5 ASN A 201 GLY A 205 0 SHEET 2 AA6 5 GLU A 193 ARG A 198 -1 N GLN A 196 O THR A 203 SHEET 3 AA6 5 VAL B 156 GLU B 162 1 O VAL B 159 N ILE A 195 SHEET 4 AA6 5 GLU A 271 LEU A 278 1 N SER A 277 O CYS B 158 SHEET 5 AA6 5 LEU A 281 PRO A 282 -1 O LEU A 281 N LEU A 278 SHEET 1 AA7 6 GLN B 25 PRO B 30 0 SHEET 2 AA7 6 ILE B 17 VAL B 22 -1 N VAL B 18 O VAL B 29 SHEET 3 AA7 6 THR B 136 PRO B 143 -1 O ALA B 139 N TYR B 19 SHEET 4 AA7 6 ALA B 112 THR B 119 -1 N TYR B 115 O MET B 140 SHEET 5 AA7 6 GLY B 48 HIS B 58 -1 N VAL B 55 O ALA B 112 SHEET 6 AA7 6 ALA B 61 PRO B 64 -1 O VAL B 63 N TYR B 56 SITE 1 AC1 6 ARG A 73 HOH A 617 HOH A 694 SER B 267 SITE 2 AC1 6 ALA B 268 HOH B 684 SITE 1 AC2 5 LYS A 172 SER A 267 ALA A 268 ARG B 73 SITE 2 AC2 5 HOH B 677 CRYST1 44.080 102.970 152.220 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022686 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009712 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006569 0.00000