HEADER HYDROLASE 14-APR-14 4PBX TITLE CRYSTAL STRUCTURE OF THE SIX N-TERMINAL DOMAINS OF HUMAN RECEPTOR TITLE 2 PROTEIN TYROSINE PHOSPHATASE SIGMA CAVEAT 4PBX NAG A 701 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE S; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 30-588; COMPND 5 SYNONYM: R-PTP-S,RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE SIGMA,R- COMPND 6 PTP-SIGMA; COMPND 7 EC: 3.1.3.48; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PTPRS; SOURCE 6 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: HUMAN; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: HEK293T; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PHLSEC KEYWDS SIGNALING PROTEIN, SYNAPSE CELL SIGNALLING CELL SURFACE RECEPTOR, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.H.COLES,N.MITAKIDIS,P.ZHANG,J.ELEGHEERT,W.LU,A.W.STOKER,T.NAKAGAWA, AUTHOR 2 A.M.CRAIG,E.Y.JONES,A.R.ARICESCU REVDAT 6 16-OCT-24 4PBX 1 REMARK REVDAT 5 20-DEC-23 4PBX 1 HETSYN REVDAT 4 29-JUL-20 4PBX 1 CAVEAT COMPND REMARK HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 30-AUG-17 4PBX 1 HELIX SHEET REVDAT 2 19-NOV-14 4PBX 1 JRNL REVDAT 1 12-NOV-14 4PBX 0 JRNL AUTH C.H.COLES,N.MITAKIDIS,P.ZHANG,J.ELEGHEERT,W.LU,A.W.STOKER, JRNL AUTH 2 T.NAKAGAWA,A.M.CRAIG,E.Y.JONES,A.R.ARICESCU JRNL TITL STRUCTURAL BASIS FOR EXTRACELLULAR CIS AND TRANS RPTP SIGMA JRNL TITL 2 SIGNAL COMPETITION IN SYNAPTOGENESIS. JRNL REF NAT COMMUN V. 5 5209 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 25385546 JRNL DOI 10.1038/NCOMMS6209 REMARK 2 REMARK 2 RESOLUTION. 3.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 172.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 24310 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.236 REMARK 3 R VALUE (WORKING SET) : 0.234 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1309 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1755 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.3710 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 120.8 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 0.70000 REMARK 3 B33 (A**2) : -2.28000 REMARK 3 B12 (A**2) : 0.35000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.622 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.369 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.312 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 42.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.910 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.900 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4510 ; 0.005 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4227 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6145 ; 1.008 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9762 ; 0.667 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 5.945 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 195 ;34.678 ;24.308 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 735 ;14.843 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 33 ;14.675 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 695 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5090 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 961 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2271 ; 1.657 ; 6.044 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2270 ; 1.658 ; 6.044 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2837 ; 2.909 ; 9.065 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2838 ; 2.909 ; 9.065 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2238 ; 1.395 ; 6.157 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2238 ; 1.395 ; 6.157 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3308 ; 2.525 ; 9.180 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4655 ; 4.515 ;46.477 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4655 ; 4.515 ;46.476 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 35 A 702 REMARK 3 ORIGIN FOR THE GROUP (A): 38.1702 60.3787 -30.8847 REMARK 3 T TENSOR REMARK 3 T11: 0.4833 T22: 0.8713 REMARK 3 T33: 0.2999 T12: 0.0295 REMARK 3 T13: 0.0798 T23: -0.0230 REMARK 3 L TENSOR REMARK 3 L11: 3.1688 L22: 0.6741 REMARK 3 L33: 0.5899 L12: -1.0400 REMARK 3 L13: -1.3555 L23: 0.4551 REMARK 3 S TENSOR REMARK 3 S11: -0.4109 S12: -1.0887 S13: -0.6658 REMARK 3 S21: 0.2066 S22: 0.1649 S23: 0.2342 REMARK 3 S31: 0.1954 S32: 0.5149 S33: 0.2460 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PBX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201110. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25619 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.150 REMARK 200 RESOLUTION RANGE LOW (A) : 99.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : 7.600 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.1 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 0.99100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 2YD3, 2YD4, 2YD9, 2DJU REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 79.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 % PEG 400, 0.01 M MAGNESIUM REMARK 280 CHLORIDE, 0.1 M POTASSIUM CHLORIDE, 0.05 M MES PH 6.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293.5K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.13333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 88.26667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 66.20000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 110.33333 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 22.06667 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.13333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 88.26667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 110.33333 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 66.20000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 22.06667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE SAMPLE SEQUENCE MATCHES TO ISOFORM 6 OF UNIPROT Q13332 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 27 REMARK 465 THR A 28 REMARK 465 GLY A 29 REMARK 465 GLU A 30 REMARK 465 GLU A 31 REMARK 465 PRO A 32 REMARK 465 PRO A 33 REMARK 465 ARG A 34 REMARK 465 THR A 603 REMARK 465 LYS A 604 REMARK 465 HIS A 605 REMARK 465 HIS A 606 REMARK 465 HIS A 607 REMARK 465 HIS A 608 REMARK 465 HIS A 609 REMARK 465 HIS A 610 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 94 131.62 -176.50 REMARK 500 ASN A 111 -167.83 -126.64 REMARK 500 THR A 149 -30.77 70.11 REMARK 500 CYS A 156 117.28 -164.78 REMARK 500 SER A 258 102.87 -162.62 REMARK 500 ASN A 283 102.76 -166.16 REMARK 500 LYS A 291 -45.08 -130.19 REMARK 500 THR A 324 124.53 -37.38 REMARK 500 THR A 328 -69.68 -99.15 REMARK 500 GLN A 359 79.20 -113.08 REMARK 500 ASP A 360 131.77 -34.02 REMARK 500 ASN A 393 -168.95 -125.89 REMARK 500 PRO A 417 150.70 -42.48 REMARK 500 ASN A 419 47.36 35.06 REMARK 500 LEU A 472 133.04 -172.93 REMARK 500 GLN A 537 -65.42 63.81 REMARK 500 GLU A 538 132.77 -32.91 REMARK 500 ASP A 570 70.67 57.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2YD2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-2 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA REMARK 900 RELATED ID: 2YD9 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL IG1-3 MODULE OF HUMAN RECEPTOR REMARK 900 PROTEIN TYROSINE PHOSPHATASE SIGMA DBREF 4PBX A 30 601 UNP Q13332 PTPRS_HUMAN 30 601 SEQADV 4PBX GLU A 27 UNP Q13332 EXPRESSION TAG SEQADV 4PBX THR A 28 UNP Q13332 EXPRESSION TAG SEQADV 4PBX GLY A 29 UNP Q13332 EXPRESSION TAG SEQADV 4PBX GLY A 602 UNP Q13332 EXPRESSION TAG SEQADV 4PBX THR A 603 UNP Q13332 EXPRESSION TAG SEQADV 4PBX LYS A 604 UNP Q13332 EXPRESSION TAG SEQADV 4PBX HIS A 605 UNP Q13332 EXPRESSION TAG SEQADV 4PBX HIS A 606 UNP Q13332 EXPRESSION TAG SEQADV 4PBX HIS A 607 UNP Q13332 EXPRESSION TAG SEQADV 4PBX HIS A 608 UNP Q13332 EXPRESSION TAG SEQADV 4PBX HIS A 609 UNP Q13332 EXPRESSION TAG SEQADV 4PBX HIS A 610 UNP Q13332 EXPRESSION TAG SEQRES 1 A 584 GLU THR GLY GLU GLU PRO PRO ARG PHE ILE LYS GLU PRO SEQRES 2 A 584 LYS ASP GLN ILE GLY VAL SER GLY GLY VAL ALA SER PHE SEQRES 3 A 584 VAL CYS GLN ALA THR GLY ASP PRO LYS PRO ARG VAL THR SEQRES 4 A 584 TRP ASN LYS LYS GLY LYS LYS VAL ASN SER GLN ARG PHE SEQRES 5 A 584 GLU THR ILE GLU PHE ASP GLU SER ALA GLY ALA VAL LEU SEQRES 6 A 584 ARG ILE GLN PRO LEU ARG THR PRO ARG ASP GLU ASN VAL SEQRES 7 A 584 TYR GLU CYS VAL ALA GLN ASN SER VAL GLY GLU ILE THR SEQRES 8 A 584 VAL HIS ALA LYS LEU THR VAL LEU ARG GLU ASP GLN LEU SEQRES 9 A 584 PRO SER GLY PHE PRO ASN ILE ASP MET GLY PRO GLN LEU SEQRES 10 A 584 LYS VAL VAL GLU ARG THR ARG THR ALA THR MET LEU CYS SEQRES 11 A 584 ALA ALA SER GLY ASN PRO ASP PRO GLU ILE THR TRP PHE SEQRES 12 A 584 LYS ASP PHE LEU PRO VAL ASP PRO SER ALA SER ASN GLY SEQRES 13 A 584 ARG ILE LYS GLN LEU ARG SER GLY ALA LEU GLN ILE GLU SEQRES 14 A 584 SER SER GLU GLU THR ASP GLN GLY LYS TYR GLU CYS VAL SEQRES 15 A 584 ALA THR ASN SER ALA GLY VAL ARG TYR SER SER PRO ALA SEQRES 16 A 584 ASN LEU TYR VAL ARG VAL ARG ARG VAL ALA PRO ARG PHE SEQRES 17 A 584 SER ILE LEU PRO MET SER HIS GLU ILE MET PRO GLY GLY SEQRES 18 A 584 ASN VAL ASN ILE THR CYS VAL ALA VAL GLY SER PRO MET SEQRES 19 A 584 PRO TYR VAL LYS TRP MET GLN GLY ALA GLU ASP LEU THR SEQRES 20 A 584 PRO GLU ASP ASP MET PRO VAL GLY ARG ASN VAL LEU GLU SEQRES 21 A 584 LEU THR ASP VAL LYS ASP SER ALA ASN TYR THR CYS VAL SEQRES 22 A 584 ALA MET SER SER LEU GLY VAL ILE GLU ALA VAL ALA GLN SEQRES 23 A 584 ILE THR VAL LYS SER LEU PRO LYS ALA PRO GLY THR PRO SEQRES 24 A 584 MET VAL THR GLU ASN THR ALA THR SER ILE THR ILE THR SEQRES 25 A 584 TRP ASP SER GLY ASN PRO ASP PRO VAL SER TYR TYR VAL SEQRES 26 A 584 ILE GLU TYR LYS SER LYS SER GLN ASP GLY PRO TYR GLN SEQRES 27 A 584 ILE LYS GLU ASP ILE THR THR THR ARG TYR SER ILE GLY SEQRES 28 A 584 GLY LEU SER PRO ASN SER GLU TYR GLU ILE TRP VAL SER SEQRES 29 A 584 ALA VAL ASN SER ILE GLY GLN GLY PRO PRO SER GLU SER SEQRES 30 A 584 VAL VAL THR ARG THR GLY GLU GLN ALA PRO ALA SER ALA SEQRES 31 A 584 PRO ARG ASN VAL GLN ALA ARG MET LEU SER ALA THR THR SEQRES 32 A 584 MET ILE VAL GLN TRP GLU GLU PRO VAL GLU PRO ASN GLY SEQRES 33 A 584 LEU ILE ARG GLY TYR ARG VAL TYR TYR THR MET GLU PRO SEQRES 34 A 584 GLU HIS PRO VAL GLY ASN TRP GLN LYS HIS ASN VAL ASP SEQRES 35 A 584 ASP SER LEU LEU THR THR VAL GLY SER LEU LEU GLU ASP SEQRES 36 A 584 GLU THR TYR THR VAL ARG VAL LEU ALA PHE THR SER VAL SEQRES 37 A 584 GLY ASP GLY PRO LEU SER ASP PRO ILE GLN VAL LYS THR SEQRES 38 A 584 GLN GLN GLY VAL PRO GLY GLN PRO MET ASN LEU ARG ALA SEQRES 39 A 584 GLU ALA ARG SER GLU THR SER ILE THR LEU SER TRP SER SEQRES 40 A 584 PRO PRO ARG GLN GLU SER ILE ILE LYS TYR GLU LEU LEU SEQRES 41 A 584 PHE ARG GLU GLY ASP HIS GLY ARG GLU VAL GLY ARG THR SEQRES 42 A 584 PHE ASP PRO THR THR SER TYR VAL VAL GLU ASP LEU LYS SEQRES 43 A 584 PRO ASN THR GLU TYR ALA PHE ARG LEU ALA ALA ARG SER SEQRES 44 A 584 PRO GLN GLY LEU GLY ALA PHE THR PRO VAL VAL ARG GLN SEQRES 45 A 584 ARG THR LEU GLY THR LYS HIS HIS HIS HIS HIS HIS MODRES 4PBX NAG A 701 NAG -D MODRES 4PBX NAG A 702 NAG -D HET NAG A 701 14 HET NAG A 702 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 2(C8 H15 N O6) HELIX 1 AA1 ARG A 126 LEU A 130 5 5 HELIX 2 AA2 PRO A 177 ASN A 181 5 5 HELIX 3 AA3 GLU A 198 GLN A 202 5 5 HELIX 4 AA4 PRO A 458 TRP A 462 5 5 SHEET 1 AA1 4 GLN A 42 VAL A 45 0 SHEET 2 AA1 4 VAL A 118 LEU A 125 1 O THR A 123 N GLY A 44 SHEET 3 AA1 4 VAL A 104 VAL A 108 -1 N TYR A 105 O ALA A 120 SHEET 4 AA1 4 THR A 65 ASN A 67 -1 N ASN A 67 O GLU A 106 SHEET 1 AA2 3 ALA A 50 PHE A 52 0 SHEET 2 AA2 3 GLY A 88 ILE A 93 -1 O LEU A 91 N PHE A 52 SHEET 3 AA2 3 PHE A 78 PHE A 83 -1 N PHE A 83 O GLY A 88 SHEET 1 AA3 2 ASN A 136 MET A 139 0 SHEET 2 AA3 2 ALA A 157 SER A 159 -1 O ALA A 157 N MET A 139 SHEET 1 AA4 5 LYS A 144 GLU A 147 0 SHEET 2 AA4 5 ALA A 221 ARG A 226 1 O ASN A 222 N LYS A 144 SHEET 3 AA4 5 GLY A 203 THR A 210 -1 N GLY A 203 O LEU A 223 SHEET 4 AA4 5 GLU A 165 LYS A 170 -1 N PHE A 169 O GLU A 206 SHEET 5 AA4 5 LEU A 173 PRO A 174 -1 O LEU A 173 N LYS A 170 SHEET 1 AA5 4 LYS A 144 GLU A 147 0 SHEET 2 AA5 4 ALA A 221 ARG A 226 1 O ASN A 222 N LYS A 144 SHEET 3 AA5 4 GLY A 203 THR A 210 -1 N GLY A 203 O LEU A 223 SHEET 4 AA5 4 VAL A 215 TYR A 217 -1 O ARG A 216 N ALA A 209 SHEET 1 AA6 3 ALA A 152 MET A 154 0 SHEET 2 AA6 3 LEU A 192 ILE A 194 -1 O LEU A 192 N MET A 154 SHEET 3 AA6 3 ILE A 184 GLN A 186 -1 N LYS A 185 O GLN A 193 SHEET 1 AA7 2 VAL A 230 ILE A 236 0 SHEET 2 AA7 2 VAL A 254 SER A 258 -1 O SER A 258 N VAL A 230 SHEET 1 AA8 5 HIS A 241 ILE A 243 0 SHEET 2 AA8 5 VAL A 306 VAL A 315 1 O THR A 314 N HIS A 241 SHEET 3 AA8 5 ASN A 295 MET A 301 -1 N CYS A 298 O ALA A 309 SHEET 4 AA8 5 TYR A 262 GLN A 267 -1 N LYS A 264 O VAL A 299 SHEET 5 AA8 5 GLU A 270 ASP A 271 -1 O GLU A 270 N GLN A 267 SHEET 1 AA9 2 VAL A 249 ILE A 251 0 SHEET 2 AA9 2 LEU A 285 LEU A 287 -1 O LEU A 287 N VAL A 249 SHEET 1 AB1 3 MET A 326 ASN A 330 0 SHEET 2 AB1 3 ILE A 335 THR A 338 -1 O THR A 338 N MET A 326 SHEET 3 AB1 3 ARG A 373 ILE A 376 -1 O TYR A 374 N ILE A 337 SHEET 1 AB2 4 GLN A 364 ILE A 369 0 SHEET 2 AB2 4 TYR A 349 SER A 356 -1 N TYR A 350 O ILE A 369 SHEET 3 AB2 4 GLU A 384 VAL A 392 -1 O VAL A 392 N TYR A 349 SHEET 4 AB2 4 GLN A 397 PRO A 400 -1 O GLY A 398 N ALA A 391 SHEET 1 AB3 4 GLN A 364 ILE A 369 0 SHEET 2 AB3 4 TYR A 349 SER A 356 -1 N TYR A 350 O ILE A 369 SHEET 3 AB3 4 GLU A 384 VAL A 392 -1 O VAL A 392 N TYR A 349 SHEET 4 AB3 4 VAL A 404 ARG A 407 -1 O THR A 406 N TYR A 385 SHEET 1 AB4 3 ARG A 418 MET A 424 0 SHEET 2 AB4 3 MET A 430 GLU A 435 -1 O ILE A 431 N ARG A 423 SHEET 3 AB4 3 LEU A 472 VAL A 475 -1 O VAL A 475 N MET A 430 SHEET 1 AB5 4 GLN A 463 ASN A 466 0 SHEET 2 AB5 4 ILE A 444 THR A 452 -1 N TYR A 451 O GLN A 463 SHEET 3 AB5 4 THR A 483 THR A 492 -1 O THR A 485 N THR A 452 SHEET 4 AB5 4 ILE A 503 LYS A 506 -1 O VAL A 505 N TYR A 484 SHEET 1 AB6 3 MET A 516 SER A 524 0 SHEET 2 AB6 3 SER A 527 SER A 533 -1 O SER A 531 N ARG A 519 SHEET 3 AB6 3 SER A 565 VAL A 568 -1 O VAL A 568 N ILE A 528 SHEET 1 AB7 4 VAL A 556 PHE A 560 0 SHEET 2 AB7 4 LYS A 542 GLU A 549 -1 N PHE A 547 O VAL A 556 SHEET 3 AB7 4 GLU A 576 SER A 585 -1 O ALA A 582 N GLU A 544 SHEET 4 AB7 4 GLY A 588 PHE A 592 -1 O GLY A 590 N ALA A 583 SHEET 1 AB8 4 VAL A 556 PHE A 560 0 SHEET 2 AB8 4 LYS A 542 GLU A 549 -1 N PHE A 547 O VAL A 556 SHEET 3 AB8 4 GLU A 576 SER A 585 -1 O ALA A 582 N GLU A 544 SHEET 4 AB8 4 VAL A 596 ARG A 599 -1 O VAL A 596 N PHE A 579 SSBOND 1 CYS A 54 CYS A 107 1555 1555 2.04 SSBOND 2 CYS A 156 CYS A 207 1555 1555 2.04 SSBOND 3 CYS A 253 CYS A 298 1555 1555 2.02 LINK ND2 ASN A 250 C1 NAG A 702 1555 1555 1.39 LINK ND2 ASN A 295 C1 NAG A 701 1555 1555 1.48 CISPEP 1 ASP A 59 PRO A 60 0 1.85 CISPEP 2 GLN A 94 PRO A 95 0 -6.07 CISPEP 3 THR A 98 PRO A 99 0 4.05 CISPEP 4 ASN A 161 PRO A 162 0 -1.60 CISPEP 5 GLY A 246 GLY A 247 0 2.05 CISPEP 6 SER A 258 PRO A 259 0 6.95 CISPEP 7 GLY A 361 PRO A 362 0 -6.13 CRYST1 198.780 198.780 132.400 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005031 0.002904 0.000000 0.00000 SCALE2 0.000000 0.005809 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007553 0.00000