HEADER HYDROLASE 16-APR-14 4PCN TITLE PHOSPHOTRIESTERASE VARIANT R22 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE VARIANT PTE-R22; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PHOSPHOTRIESTERASE, ARYLESTERASE, EVOLUTION, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR C.J.JACKSON,E.CAMPBELL,M.KALTENBACH,N.TOKURIKI REVDAT 5 15-NOV-23 4PCN 1 REMARK REVDAT 4 27-SEP-23 4PCN 1 LINK REVDAT 3 18-APR-18 4PCN 1 JRNL REMARK REVDAT 2 07-SEP-16 4PCN 1 JRNL REVDAT 1 06-MAY-15 4PCN 0 JRNL AUTH E.CAMPBELL,M.KALTENBACH,G.J.CORREY,P.D.CARR,B.T.POREBSKI, JRNL AUTH 2 E.K.LIVINGSTONE,L.AFRIAT-JURNOU,A.M.BUCKLE,M.WEIK, JRNL AUTH 3 F.HOLLFELDER,N.TOKURIKI,C.J.JACKSON JRNL TITL THE ROLE OF PROTEIN DYNAMICS IN THE EVOLUTION OF NEW ENZYME JRNL TITL 2 FUNCTION. JRNL REF NAT. CHEM. BIOL. V. 12 944 2016 JRNL REFN ESSN 1552-4469 JRNL PMID 27618189 JRNL DOI 10.1038/NCHEMBIO.2175 REMARK 2 REMARK 2 RESOLUTION. 1.54 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.54 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.44 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 97901 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.205 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4894 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4501 - 4.7824 1.00 3337 175 0.1720 0.2002 REMARK 3 2 4.7824 - 3.7969 1.00 3183 180 0.1379 0.1675 REMARK 3 3 3.7969 - 3.3172 1.00 3159 159 0.1496 0.1776 REMARK 3 4 3.3172 - 3.0141 1.00 3120 191 0.1554 0.1837 REMARK 3 5 3.0141 - 2.7981 1.00 3159 148 0.1602 0.2038 REMARK 3 6 2.7981 - 2.6332 1.00 3133 151 0.1617 0.1848 REMARK 3 7 2.6332 - 2.5013 1.00 3098 178 0.1632 0.1926 REMARK 3 8 2.5013 - 2.3924 1.00 3097 163 0.1628 0.1941 REMARK 3 9 2.3924 - 2.3003 1.00 3135 158 0.1672 0.2251 REMARK 3 10 2.3003 - 2.2210 1.00 3085 161 0.1658 0.2022 REMARK 3 11 2.2210 - 2.1515 1.00 3098 155 0.1682 0.1919 REMARK 3 12 2.1515 - 2.0900 1.00 3083 161 0.1773 0.2107 REMARK 3 13 2.0900 - 2.0350 1.00 3123 155 0.1760 0.2189 REMARK 3 14 2.0350 - 1.9854 1.00 3078 166 0.1736 0.2131 REMARK 3 15 1.9854 - 1.9402 1.00 3071 174 0.1777 0.2005 REMARK 3 16 1.9402 - 1.8990 1.00 3094 132 0.1804 0.2360 REMARK 3 17 1.8990 - 1.8610 1.00 3079 163 0.1878 0.2567 REMARK 3 18 1.8610 - 1.8258 1.00 3077 163 0.1943 0.2171 REMARK 3 19 1.8258 - 1.7932 1.00 3045 154 0.1897 0.2214 REMARK 3 20 1.7932 - 1.7628 1.00 3108 155 0.1899 0.2537 REMARK 3 21 1.7628 - 1.7344 1.00 3073 174 0.1879 0.2333 REMARK 3 22 1.7344 - 1.7077 1.00 3089 156 0.2018 0.2247 REMARK 3 23 1.7077 - 1.6826 1.00 3061 177 0.2012 0.2635 REMARK 3 24 1.6826 - 1.6589 1.00 3055 162 0.2022 0.2432 REMARK 3 25 1.6589 - 1.6365 1.00 3088 161 0.2162 0.2804 REMARK 3 26 1.6365 - 1.6152 1.00 3043 164 0.2198 0.2677 REMARK 3 27 1.6152 - 1.5950 1.00 3094 153 0.2165 0.2509 REMARK 3 28 1.5950 - 1.5758 1.00 3073 159 0.2177 0.2494 REMARK 3 29 1.5758 - 1.5575 1.00 3053 159 0.2372 0.2636 REMARK 3 30 1.5575 - 1.5400 1.00 3016 187 0.2440 0.2820 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 5563 REMARK 3 ANGLE : 1.546 7626 REMARK 3 CHIRALITY : 0.079 885 REMARK 3 PLANARITY : 0.009 1003 REMARK 3 DIHEDRAL : 13.657 2055 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PCN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201103. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9537 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97912 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.540 REMARK 200 RESOLUTION RANGE LOW (A) : 39.440 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.11110 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.54 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.60 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 1.23700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4GY0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.27 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA CACODYLATE, 30% 2-METHYL-2,4 REMARK 280 -PENTANEDIOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.95000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.13300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.95000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.13300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4930 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -232.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 515 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 ASP A 35 REMARK 465 LEU A 362 REMARK 465 ARG A 363 REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 MET B 33 REMARK 465 ARG B 363 REMARK 465 ALA B 364 REMARK 465 SER B 365 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 701 O HOH B 725 1.80 REMARK 500 OD2 ASP A 301 O HOH A 630 1.94 REMARK 500 OD2 ASP B 301 O HOH B 701 1.99 REMARK 500 O HOH A 597 O HOH A 635 2.04 REMARK 500 O HOH A 630 O HOH A 655 2.07 REMARK 500 O HOH A 630 O HOH A 635 2.08 REMARK 500 NE ARG A 67 O HOH A 658 2.13 REMARK 500 NH2 ARG B 89 O HOH B 771 2.14 REMARK 500 O HOH A 568 O HOH A 725 2.16 REMARK 500 OG SER B 62 O HOH B 610 2.16 REMARK 500 NH1 ARG A 356 O HOH A 659 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 139 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 225 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG B 225 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 225 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -131.13 -153.37 REMARK 500 SER A 61 -123.05 -150.36 REMARK 500 TRP A 69 58.85 -144.06 REMARK 500 VAL A 101 30.55 -96.05 REMARK 500 TRP A 131 -147.48 -94.22 REMARK 500 GLU A 159 -130.86 52.45 REMARK 500 SER A 258 118.53 -163.41 REMARK 500 ALA A 259 -109.72 75.08 REMARK 500 ILE A 260 136.58 69.71 REMARK 500 LEU A 262 52.55 -116.07 REMARK 500 MET A 272 -93.00 -73.27 REMARK 500 MET A 272 -83.02 -80.66 REMARK 500 TYR A 309 -149.57 -130.65 REMARK 500 VAL A 351 -56.46 -120.03 REMARK 500 SER B 61 -139.00 -157.31 REMARK 500 SER B 61 -126.54 -152.59 REMARK 500 TRP B 131 -149.77 -94.94 REMARK 500 GLU B 159 -132.93 50.32 REMARK 500 SER B 205 12.36 -165.98 REMARK 500 SER B 205 12.71 -165.98 REMARK 500 TYR B 309 -152.09 -129.47 REMARK 500 VAL B 351 -56.65 -121.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 57 NE2 116.7 REMARK 620 3 KCX A 169 OQ1 96.5 89.1 REMARK 620 4 ASP A 301 OD1 84.0 88.6 177.6 REMARK 620 5 HOH A 655 O 115.6 127.6 87.4 94.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX A 169 OQ2 REMARK 620 2 HIS A 201 ND1 100.5 REMARK 620 3 HIS A 230 NE2 116.0 97.8 REMARK 620 4 HOH A 655 O 106.1 128.4 108.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 406 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 55 NE2 REMARK 620 2 HIS B 57 NE2 118.6 REMARK 620 3 KCX B 169 OQ2 95.0 89.4 REMARK 620 4 ASP B 301 OD1 86.5 86.4 175.8 REMARK 620 5 HOH B 725 O 110.0 131.3 88.3 94.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 405 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX B 169 OQ1 REMARK 620 2 HIS B 201 ND1 99.2 REMARK 620 3 HIS B 230 NE2 116.1 103.7 REMARK 620 4 HOH B 725 O 106.2 127.7 104.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PBE RELATED DB: PDB REMARK 900 RELATED ID: 4PBF RELATED DB: PDB REMARK 900 RELATED ID: 4PCP RELATED DB: PDB REMARK 900 RELATED ID: 4XAF RELATED DB: PDB REMARK 900 RELATED ID: 4XAG RELATED DB: PDB REMARK 900 RELATED ID: 4XAY RELATED DB: PDB REMARK 900 RELATED ID: 4XAZ RELATED DB: PDB REMARK 900 RELATED ID: 4XD3 RELATED DB: PDB REMARK 900 RELATED ID: 4XD4 RELATED DB: PDB REMARK 900 RELATED ID: 4XD5 RELATED DB: PDB REMARK 900 RELATED ID: 4XD6 RELATED DB: PDB DBREF1 4PCN A 33 365 UNP A0A060GSW0_BREDI DBREF2 4PCN A A0A060GSW0 1 333 DBREF1 4PCN B 33 365 UNP A0A060GSW0_BREDI DBREF2 4PCN B A0A060GSW0 1 333 SEQRES 1 A 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE ALA SEQRES 2 A 333 ILE SER GLU VAL GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 A 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 A 333 PHE PHE GLY SER ARG GLU ALA LEU VAL GLU LYS ALA VAL SEQRES 5 A 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 A 333 ILE VAL ASP VAL THR THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 A 333 ARG LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 A 333 ILE VAL ALA ALA THR GLY VAL TRP LEU ASP PRO PRO LEU SEQRES 9 A 333 THR ILE ARG MET ARG SER VAL VAL GLU LEU THR GLN PHE SEQRES 10 A 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 A 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA ILE THR GLY LYS SEQRES 12 A 333 MET THR PRO PHE HIS GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 A 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 A 333 THR ALA GLY SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 A 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 A 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 A 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 A 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 A 333 SER ALA THR ALA PHE MET GLY SER ARG SER TRP GLN THR SEQRES 20 A 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 A 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 A 333 ILE SER SER TYR VAL THR ASN PHE THR ASP VAL MET ASP SEQRES 23 A 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 A 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY THR PRO GLN GLU SEQRES 25 A 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 A 333 LEU SER PRO THR LEU ARG ALA SER SEQRES 1 B 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE ALA SEQRES 2 B 333 ILE SER GLU VAL GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 B 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 B 333 PHE PHE GLY SER ARG GLU ALA LEU VAL GLU LYS ALA VAL SEQRES 5 B 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 B 333 ILE VAL ASP VAL THR THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 B 333 ARG LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 B 333 ILE VAL ALA ALA THR GLY VAL TRP LEU ASP PRO PRO LEU SEQRES 9 B 333 THR ILE ARG MET ARG SER VAL VAL GLU LEU THR GLN PHE SEQRES 10 B 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 B 333 ILE ARG ALA GLY ILE ILE KCX VAL ALA ILE THR GLY LYS SEQRES 12 B 333 MET THR PRO PHE HIS GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 B 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 B 333 THR ALA GLY SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 B 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 B 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 B 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 B 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 B 333 SER ALA THR ALA PHE MET GLY SER ARG SER TRP GLN THR SEQRES 20 B 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 B 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 B 333 ILE SER SER TYR VAL THR ASN PHE THR ASP VAL MET ASP SEQRES 23 B 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 B 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY THR PRO GLN GLU SEQRES 25 B 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 B 333 LEU SER PRO THR LEU ARG ALA SER MODRES 4PCN KCX A 169 LYS MODIFIED RESIDUE MODRES 4PCN KCX B 169 LYS MODIFIED RESIDUE HET KCX A 169 12 HET KCX B 169 12 HET MPD A 401 8 HET ZN A 402 1 HET ZN A 403 1 HET MPD B 401 8 HET MPD B 402 8 HET MPD B 403 8 HET MPD B 404 8 HET ZN B 405 1 HET ZN B 406 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM ZN ZINC ION FORMUL 1 KCX 2(C7 H14 N2 O4) FORMUL 3 MPD 5(C6 H14 O2) FORMUL 4 ZN 4(ZN 2+) FORMUL 12 HOH *531(H2 O) HELIX 1 AA1 ALA A 45 VAL A 49 5 5 HELIX 2 AA2 GLY A 64 TRP A 69 1 6 HELIX 3 AA3 PRO A 70 GLY A 74 5 5 HELIX 4 AA4 SER A 75 ALA A 93 1 19 HELIX 5 AA5 THR A 103 GLY A 107 5 5 HELIX 6 AA6 ASP A 109 ASP A 121 1 13 HELIX 7 AA7 PRO A 135 MET A 140 1 6 HELIX 8 AA8 SER A 142 TYR A 156 1 15 HELIX 9 AA9 THR A 177 GLY A 195 1 19 HELIX 10 AB1 ARG A 207 GLU A 219 1 13 HELIX 11 AB2 SER A 222 SER A 224 5 3 HELIX 12 AB3 HIS A 230 THR A 234 5 5 HELIX 13 AB4 ASP A 236 ARG A 246 1 11 HELIX 14 AB5 ARG A 254 ALA A 259 5 6 HELIX 15 AB6 ASN A 265 MET A 272 1 8 HELIX 16 AB7 SER A 276 GLN A 290 1 15 HELIX 17 AB8 TYR A 292 LYS A 294 5 3 HELIX 18 AB9 ASN A 312 ASN A 321 1 10 HELIX 19 AC1 ASP A 323 MET A 325 5 3 HELIX 20 AC2 ALA A 326 LYS A 339 1 14 HELIX 21 AC3 PRO A 342 VAL A 351 1 10 HELIX 22 AC4 VAL A 351 SER A 359 1 9 HELIX 23 AC5 ALA B 45 VAL B 49 5 5 HELIX 24 AC6 GLY B 64 TRP B 69 1 6 HELIX 25 AC7 PRO B 70 GLY B 74 5 5 HELIX 26 AC8 SER B 75 ALA B 93 1 19 HELIX 27 AC9 THR B 103 GLY B 107 5 5 HELIX 28 AD1 ASP B 109 ASP B 121 1 13 HELIX 29 AD2 PRO B 135 MET B 140 1 6 HELIX 30 AD3 SER B 142 TYR B 156 1 15 HELIX 31 AD4 THR B 177 GLY B 195 1 19 HELIX 32 AD5 GLY B 208 GLU B 219 1 12 HELIX 33 AD6 SER B 222 SER B 224 5 3 HELIX 34 AD7 HIS B 230 THR B 234 5 5 HELIX 35 AD8 ASP B 236 ARG B 246 1 11 HELIX 36 AD9 ASN B 265 GLY B 273 1 9 HELIX 37 AE1 SER B 276 GLN B 290 1 15 HELIX 38 AE2 TYR B 292 LYS B 294 5 3 HELIX 39 AE3 ASN B 312 ASN B 321 1 10 HELIX 40 AE4 ASP B 323 MET B 325 5 3 HELIX 41 AE5 ALA B 326 ARG B 331 1 6 HELIX 42 AE6 ARG B 331 LYS B 339 1 9 HELIX 43 AE7 PRO B 342 VAL B 351 1 10 HELIX 44 AE8 VAL B 351 SER B 359 1 9 SHEET 1 AA1 2 ILE A 37 THR A 39 0 SHEET 2 AA1 2 GLY A 42 ILE A 44 -1 O ILE A 44 N ILE A 37 SHEET 1 AA2 3 THR A 52 GLU A 56 0 SHEET 2 AA2 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 AA2 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 AA3 2 CYS A 59 GLY A 60 0 SHEET 2 AA3 2 GLY A 305 ILE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 AA4 6 ALA A 127 VAL A 130 0 SHEET 2 AA4 6 ILE A 167 THR A 173 1 O KCX A 169 N THR A 128 SHEET 3 AA4 6 VAL A 198 ALA A 203 1 O ILE A 199 N ILE A 168 SHEET 4 AA4 6 VAL A 226 GLY A 229 1 O CYS A 227 N VAL A 198 SHEET 5 AA4 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 AA4 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 AA5 2 ILE B 37 THR B 39 0 SHEET 2 AA5 2 GLY B 42 ILE B 44 -1 O ILE B 44 N ILE B 37 SHEET 1 AA6 3 THR B 52 GLU B 56 0 SHEET 2 AA6 3 THR B 97 ASP B 100 1 O VAL B 99 N GLU B 56 SHEET 3 AA6 3 HIS B 123 VAL B 125 1 O VAL B 125 N ASP B 100 SHEET 1 AA7 2 CYS B 59 GLY B 60 0 SHEET 2 AA7 2 GLY B 305 ILE B 306 1 O GLY B 305 N GLY B 60 SHEET 1 AA8 6 ALA B 127 VAL B 130 0 SHEET 2 AA8 6 ILE B 167 THR B 173 1 O KCX B 169 N THR B 128 SHEET 3 AA8 6 VAL B 198 ALA B 203 1 O ILE B 199 N ILE B 168 SHEET 4 AA8 6 VAL B 226 GLY B 229 1 O CYS B 227 N VAL B 198 SHEET 5 AA8 6 LEU B 249 LEU B 252 1 O LEU B 249 N VAL B 226 SHEET 6 AA8 6 ILE B 296 VAL B 298 1 O LEU B 297 N LEU B 252 LINK C ILE A 168 N KCX A 169 1555 1555 1.33 LINK C KCX A 169 N AVAL A 170 1555 1555 1.31 LINK C KCX A 169 N BVAL A 170 1555 1555 1.34 LINK C ILE B 168 N KCX B 169 1555 1555 1.32 LINK C KCX B 169 N AVAL B 170 1555 1555 1.33 LINK C KCX B 169 N BVAL B 170 1555 1555 1.33 LINK NE2 HIS A 55 ZN ZN A 402 1555 1555 2.08 LINK NE2 HIS A 57 ZN ZN A 402 1555 1555 2.03 LINK OQ1 KCX A 169 ZN ZN A 402 1555 1555 2.11 LINK OQ2 KCX A 169 ZN ZN A 403 1555 1555 1.93 LINK ND1 HIS A 201 ZN ZN A 403 1555 1555 1.95 LINK NE2 HIS A 230 ZN ZN A 403 1555 1555 2.03 LINK OD1 ASP A 301 ZN ZN A 402 1555 1555 2.26 LINK ZN ZN A 402 O HOH A 655 1555 1555 2.03 LINK ZN ZN A 403 O HOH A 655 1555 1555 2.06 LINK NE2 HIS B 55 ZN ZN B 406 1555 1555 2.11 LINK NE2 HIS B 57 ZN ZN B 406 1555 1555 2.03 LINK OQ1 KCX B 169 ZN ZN B 405 1555 1555 1.91 LINK OQ2 KCX B 169 ZN ZN B 406 1555 1555 2.16 LINK ND1 HIS B 201 ZN ZN B 405 1555 1555 2.00 LINK NE2 HIS B 230 ZN ZN B 405 1555 1555 2.01 LINK OD1 ASP B 301 ZN ZN B 406 1555 1555 2.23 LINK ZN ZN B 405 O HOH B 725 1555 1555 1.93 LINK ZN ZN B 406 O HOH B 725 1555 1555 1.98 CISPEP 1 ALA B 203 GLY B 204 0 0.23 SITE 1 AC1 5 PHE A 51 GLN A 343 LEU A 346 ALA A 347 SITE 2 AC1 5 THR A 350 SITE 1 AC2 6 HIS A 55 HIS A 57 KCX A 169 ASP A 301 SITE 2 AC2 6 ZN A 403 HOH A 655 SITE 1 AC3 6 HIS A 55 KCX A 169 HIS A 201 HIS A 230 SITE 2 AC3 6 ZN A 402 HOH A 655 SITE 1 AC4 4 PHE B 51 ARG B 337 GLN B 343 VAL B 351 SITE 1 AC5 3 LEU B 132 ALA B 270 HOH B 743 SITE 1 AC6 9 HIS B 57 TRP B 131 HIS B 201 PHE B 271 SITE 2 AC6 9 MPD B 404 ZN B 405 ZN B 406 HOH B 701 SITE 3 AC6 9 HOH B 725 SITE 1 AC7 10 THR B 202 ALA B 203 GLY B 204 GLU B 233 SITE 2 AC7 10 ARG B 254 ALA B 270 PHE B 271 GLY B 273 SITE 3 AC7 10 MPD B 403 HOH B 621 SITE 1 AC8 8 HIS B 55 KCX B 169 HIS B 201 HIS B 230 SITE 2 AC8 8 MPD B 403 ZN B 406 HOH B 701 HOH B 725 SITE 1 AC9 7 HIS B 55 HIS B 57 KCX B 169 ASP B 301 SITE 2 AC9 7 MPD B 403 ZN B 405 HOH B 725 CRYST1 85.900 86.266 88.684 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011641 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011592 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011276 0.00000