HEADER STRUCTURAL PROTEIN/TRANSPORT PROTEIN 17-APR-14 4PD1 TITLE STRUCTURE OF GEPHYRIN E DOMAIN WITH GLYCINE-BETA RECEPTOR PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEPHYRIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: E-DOMAIN (UNP RESIDUES 350-768); COMPND 5 SYNONYM: PUTATIVE GLYCINE RECEPTOR-TUBULIN LINKER PROTEIN; COMPND 6 EC: 2.7.7.75,2.10.1.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: GLYCINE RECEPTOR SUBUNIT BETA; COMPND 10 CHAIN: C; COMPND 11 FRAGMENT: UNP RESIDUES 419-433; COMPND 12 SYNONYM: GLYCINE RECEPTOR 58 KDA SUBUNIT; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: GPHN, GPH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: RAT; SOURCE 14 ORGANISM_TAXID: 10116 KEYWDS SCAFFOLDING PROTEIN, NEUROTRANSMITTER RECEPTOR ANCHORING PROTEIN, KEYWDS 2 MOLYBDENUM COFACTOR BIOSYNTHESIS, STRUCTURAL PROTEIN-SIGNALING KEYWDS 3 PROTEIN COMPLEX, STRUCTURAL PROTEIN-TRANSPORT PROTEIN COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.B.KASARAGOD,H.M.MARIC,H.SCHINDELIN REVDAT 7 27-SEP-23 4PD1 1 REMARK REVDAT 6 08-JAN-20 4PD1 1 REMARK REVDAT 5 27-SEP-17 4PD1 1 SOURCE KEYWDS REMARK REVDAT 4 03-DEC-14 4PD1 1 JRNL REVDAT 3 17-SEP-14 4PD1 1 JRNL REVDAT 2 03-SEP-14 4PD1 1 JRNL REVDAT 1 27-AUG-14 4PD1 0 JRNL AUTH H.M.MARIC,V.B.KASARAGOD,H.SCHINDELIN JRNL TITL MODULATION OF GEPHYRIN-GLYCINE RECEPTOR AFFINITY BY JRNL TITL 2 MULTIVALENCY. JRNL REF ACS CHEM.BIOL. V. 9 2554 2014 JRNL REFN ESSN 1554-8937 JRNL PMID 25137389 JRNL DOI 10.1021/CB500303A REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.47 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 35777 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1792 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.4783 - 4.6410 1.00 2757 143 0.1924 0.1905 REMARK 3 2 4.6410 - 3.6849 1.00 2639 158 0.1430 0.1783 REMARK 3 3 3.6849 - 3.2194 1.00 2652 134 0.1459 0.1960 REMARK 3 4 3.2194 - 2.9252 1.00 2587 164 0.1489 0.1973 REMARK 3 5 2.9252 - 2.7156 1.00 2620 132 0.1506 0.1827 REMARK 3 6 2.7156 - 2.5555 1.00 2607 124 0.1567 0.2160 REMARK 3 7 2.5555 - 2.4276 1.00 2600 134 0.1453 0.1937 REMARK 3 8 2.4276 - 2.3219 1.00 2583 125 0.1393 0.2001 REMARK 3 9 2.3219 - 2.2325 1.00 2618 125 0.1499 0.1949 REMARK 3 10 2.2325 - 2.1555 1.00 2570 136 0.1571 0.2026 REMARK 3 11 2.1555 - 2.0881 1.00 2591 120 0.1634 0.2112 REMARK 3 12 2.0881 - 2.0284 1.00 2590 146 0.1828 0.2376 REMARK 3 13 2.0284 - 1.9750 1.00 2571 151 0.2065 0.2382 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.820 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 3282 REMARK 3 ANGLE : 1.297 4451 REMARK 3 CHIRALITY : 0.080 518 REMARK 3 PLANARITY : 0.008 580 REMARK 3 DIHEDRAL : 13.318 1241 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 11 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 321 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9386 -31.0543 4.5403 REMARK 3 T TENSOR REMARK 3 T11: 0.2027 T22: 0.2008 REMARK 3 T33: 0.2995 T12: -0.0918 REMARK 3 T13: 0.0404 T23: 0.0502 REMARK 3 L TENSOR REMARK 3 L11: 1.9621 L22: 3.1670 REMARK 3 L33: 6.2898 L12: 0.0575 REMARK 3 L13: 1.1106 L23: 2.2909 REMARK 3 S TENSOR REMARK 3 S11: 0.1159 S12: 0.0005 S13: 0.3370 REMARK 3 S21: 0.4672 S22: 0.1071 S23: -0.3198 REMARK 3 S31: -0.0209 S32: 0.5405 S33: -0.1409 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 350 THROUGH 398 ) REMARK 3 ORIGIN FOR THE GROUP (A): -44.1086 -32.4905 -36.0893 REMARK 3 T TENSOR REMARK 3 T11: 0.3060 T22: 0.3401 REMARK 3 T33: 0.2734 T12: 0.0793 REMARK 3 T13: 0.0277 T23: 0.0862 REMARK 3 L TENSOR REMARK 3 L11: 2.6212 L22: 1.2390 REMARK 3 L33: 6.4547 L12: -1.6237 REMARK 3 L13: 3.5794 L23: -1.5317 REMARK 3 S TENSOR REMARK 3 S11: 0.3983 S12: 0.4593 S13: 0.0777 REMARK 3 S21: -0.3456 S22: -0.3457 S23: 0.0135 REMARK 3 S31: 0.1878 S32: 0.2405 S33: -0.0738 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 399 THROUGH 434 ) REMARK 3 ORIGIN FOR THE GROUP (A): -52.2262 -30.1213 -46.5433 REMARK 3 T TENSOR REMARK 3 T11: 0.4837 T22: 0.5534 REMARK 3 T33: 0.3247 T12: 0.2326 REMARK 3 T13: 0.0013 T23: 0.0819 REMARK 3 L TENSOR REMARK 3 L11: 1.3729 L22: 2.4804 REMARK 3 L33: 2.6346 L12: -0.0742 REMARK 3 L13: 1.8151 L23: -0.7247 REMARK 3 S TENSOR REMARK 3 S11: 0.3511 S12: 0.4918 S13: 0.0814 REMARK 3 S21: -0.5789 S22: -0.4900 S23: -0.0231 REMARK 3 S31: 0.4902 S32: 0.4862 S33: 0.1544 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 435 THROUGH 472 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.6242 -28.5550 -41.0027 REMARK 3 T TENSOR REMARK 3 T11: 0.3879 T22: 0.3659 REMARK 3 T33: 0.3884 T12: 0.0732 REMARK 3 T13: -0.0196 T23: 0.0747 REMARK 3 L TENSOR REMARK 3 L11: 4.8895 L22: 1.3868 REMARK 3 L33: 5.3684 L12: -2.4048 REMARK 3 L13: 4.6592 L23: -2.0650 REMARK 3 S TENSOR REMARK 3 S11: 0.3441 S12: 0.4993 S13: 0.1847 REMARK 3 S21: -0.1950 S22: -0.4883 S23: 0.0697 REMARK 3 S31: 0.3844 S32: 0.3732 S33: 0.0894 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 473 THROUGH 550 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.1410 -39.6416 8.3215 REMARK 3 T TENSOR REMARK 3 T11: 0.1997 T22: 0.2114 REMARK 3 T33: 0.2686 T12: -0.0258 REMARK 3 T13: -0.0137 T23: -0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.6327 L22: 0.6288 REMARK 3 L33: 6.6757 L12: 0.0911 REMARK 3 L13: -0.6350 L23: -0.6341 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: -0.1128 S13: 0.0751 REMARK 3 S21: 0.0884 S22: -0.0781 S23: -0.0322 REMARK 3 S31: 0.0182 S32: 0.0787 S33: 0.0432 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 551 THROUGH 627 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1401 -37.3085 18.1403 REMARK 3 T TENSOR REMARK 3 T11: 0.2374 T22: 0.3583 REMARK 3 T33: 0.2812 T12: -0.0521 REMARK 3 T13: -0.0696 T23: 0.0182 REMARK 3 L TENSOR REMARK 3 L11: 3.2113 L22: 3.7713 REMARK 3 L33: 1.6485 L12: -0.0670 REMARK 3 L13: -0.2889 L23: -0.8960 REMARK 3 S TENSOR REMARK 3 S11: -0.0641 S12: -0.5413 S13: -0.0107 REMARK 3 S21: 0.4530 S22: 0.0049 S23: -0.4609 REMARK 3 S31: -0.1269 S32: 0.4699 S33: 0.0354 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 628 THROUGH 661 ) REMARK 3 ORIGIN FOR THE GROUP (A): -32.1479 -25.4019 6.8423 REMARK 3 T TENSOR REMARK 3 T11: 0.2723 T22: 0.1891 REMARK 3 T33: 0.3289 T12: -0.0628 REMARK 3 T13: -0.0091 T23: -0.0090 REMARK 3 L TENSOR REMARK 3 L11: 1.2025 L22: 1.7040 REMARK 3 L33: 2.0730 L12: -1.3374 REMARK 3 L13: -0.7831 L23: 1.3619 REMARK 3 S TENSOR REMARK 3 S11: 0.0406 S12: -0.0226 S13: 0.3019 REMARK 3 S21: -0.1273 S22: -0.0927 S23: -0.0631 REMARK 3 S31: -0.3993 S32: 0.1099 S33: 0.0253 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 662 THROUGH 686 ) REMARK 3 ORIGIN FOR THE GROUP (A): -42.5618 -13.2098 12.9777 REMARK 3 T TENSOR REMARK 3 T11: 0.5558 T22: 0.2403 REMARK 3 T33: 0.4349 T12: 0.0478 REMARK 3 T13: 0.0450 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 5.1606 L22: 3.1301 REMARK 3 L33: 3.8267 L12: 0.6692 REMARK 3 L13: 2.1387 L23: 1.0720 REMARK 3 S TENSOR REMARK 3 S11: -0.3112 S12: -0.4224 S13: 0.2078 REMARK 3 S21: 0.6727 S22: 0.2645 S23: 0.3042 REMARK 3 S31: -0.6394 S32: -0.3862 S33: 0.0827 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 687 THROUGH 712 ) REMARK 3 ORIGIN FOR THE GROUP (A): -48.5327 -19.1381 11.8492 REMARK 3 T TENSOR REMARK 3 T11: 0.6286 T22: 0.4172 REMARK 3 T33: 0.7877 T12: 0.0172 REMARK 3 T13: 0.0677 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 0.2855 L22: 6.8241 REMARK 3 L33: 2.8963 L12: 1.3803 REMARK 3 L13: -0.1727 L23: -0.1379 REMARK 3 S TENSOR REMARK 3 S11: -0.0517 S12: -0.3821 S13: -0.1802 REMARK 3 S21: 0.5210 S22: 0.0021 S23: 1.3211 REMARK 3 S31: 0.0364 S32: -0.4709 S33: 0.0612 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 713 THROUGH 736 ) REMARK 3 ORIGIN FOR THE GROUP (A): -35.9881 -8.9800 14.3935 REMARK 3 T TENSOR REMARK 3 T11: 0.7215 T22: 0.2823 REMARK 3 T33: 0.5795 T12: -0.0591 REMARK 3 T13: -0.1141 T23: -0.0909 REMARK 3 L TENSOR REMARK 3 L11: 2.8396 L22: 1.1949 REMARK 3 L33: 3.7958 L12: 0.1874 REMARK 3 L13: -0.5401 L23: 1.6256 REMARK 3 S TENSOR REMARK 3 S11: 0.0449 S12: -0.3882 S13: 0.8505 REMARK 3 S21: 0.3455 S22: 0.0443 S23: -0.7717 REMARK 3 S31: -1.0268 S32: 0.1824 S33: -0.0623 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN 'C' AND (RESID 397 THROUGH 406 ) REMARK 3 ORIGIN FOR THE GROUP (A): -29.0334 -11.6460 8.6219 REMARK 3 T TENSOR REMARK 3 T11: 1.0300 T22: 0.5198 REMARK 3 T33: 1.0352 T12: -0.0179 REMARK 3 T13: -0.0467 T23: 0.0278 REMARK 3 L TENSOR REMARK 3 L11: 5.1945 L22: 2.9700 REMARK 3 L33: 3.6955 L12: -3.8571 REMARK 3 L13: -4.3775 L23: 3.2215 REMARK 3 S TENSOR REMARK 3 S11: 0.9421 S12: 0.4618 S13: 1.4602 REMARK 3 S21: -0.7562 S22: -0.2531 S23: -0.9937 REMARK 3 S31: -0.8235 S32: -0.2853 S33: -0.8113 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PD1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201168. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35783 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.975 REMARK 200 RESOLUTION RANGE LOW (A) : 36.472 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 14.70 REMARK 200 R MERGE (I) : 0.11100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2FU3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM CITRATE, PH 4.5, 28-34 % REMARK 280 2-METHYL-2-4-PENTANEDIOL, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.83000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.03000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.75000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.83000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.03000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.75000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.83000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.03000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.75000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.83000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.03000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.75000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 35290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -85.66000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 923 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 958 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 973 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 975 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 318 REMARK 465 SER A 319 REMARK 465 PRO A 320 REMARK 465 VAL A 574 REMARK 465 SER A 575 REMARK 465 MET A 576 REMARK 465 GLY A 577 REMARK 465 GLU A 578 REMARK 465 LYS A 579 REMARK 465 GLY A 693 REMARK 465 ASN A 694 REMARK 465 GLN A 695 REMARK 465 MET A 696 REMARK 465 SER A 697 REMARK 465 ARG A 735 REMARK 465 ASP C 407 REMARK 465 PHE C 408 REMARK 465 GLU C 409 REMARK 465 LEU C 410 REMARK 465 SER C 411 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1061 O HOH A 1063 1.83 REMARK 500 O HOH A 1062 O HOH A 1071 1.97 REMARK 500 OE2 GLU A 684 O HOH A 901 2.02 REMARK 500 OD1 ASP A 438 OG1 THR A 440 2.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA A 706 HO2 GOL A 807 3455 1.53 REMARK 500 O HOH A 945 O HOH A 948 4545 1.75 REMARK 500 O ALA A 706 O2 GOL A 807 3455 1.83 REMARK 500 O HOH A 955 O HOH A 976 8544 1.84 REMARK 500 OE1 GLU A 536 O3 GOL A 807 3455 1.84 REMARK 500 O HOH A 970 O HOH A 970 2455 2.03 REMARK 500 O1 GOL A 807 O1 GOL A 808 3455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO C 405 81.69 -61.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT A 809 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PD0 RELATED DB: PDB DBREF 4PD1 A 318 736 UNP Q03555 GEPH_RAT 350 768 DBREF 4PD1 C 397 411 UNP P20781 GLRB_RAT 419 433 SEQRES 1 A 419 MET SER PRO PHE PRO LEU THR SER MET ASP LYS ALA PHE SEQRES 2 A 419 ILE THR VAL LEU GLU MET THR PRO VAL LEU GLY THR GLU SEQRES 3 A 419 ILE ILE ASN TYR ARG ASP GLY MET GLY ARG VAL LEU ALA SEQRES 4 A 419 GLN ASP VAL TYR ALA LYS ASP ASN LEU PRO PRO PHE PRO SEQRES 5 A 419 ALA SER VAL LYS ASP GLY TYR ALA VAL ARG ALA ALA ASP SEQRES 6 A 419 GLY PRO GLY ASP ARG PHE ILE ILE GLY GLU SER GLN ALA SEQRES 7 A 419 GLY GLU GLN PRO THR GLN THR VAL MET PRO GLY GLN VAL SEQRES 8 A 419 MET ARG VAL THR THR GLY ALA PRO ILE PRO CYS GLY ALA SEQRES 9 A 419 ASP ALA VAL VAL GLN VAL GLU ASP THR GLU LEU ILE ARG SEQRES 10 A 419 GLU SER ASP ASP GLY THR GLU GLU LEU GLU VAL ARG ILE SEQRES 11 A 419 LEU VAL GLN ALA ARG PRO GLY GLN ASP ILE ARG PRO ILE SEQRES 12 A 419 GLY HIS ASP ILE LYS ARG GLY GLU CYS VAL LEU ALA LYS SEQRES 13 A 419 GLY THR HIS MET GLY PRO SER GLU ILE GLY LEU LEU ALA SEQRES 14 A 419 THR VAL GLY VAL THR GLU VAL GLU VAL ASN LYS PHE PRO SEQRES 15 A 419 VAL VAL ALA VAL MET SER THR GLY ASN GLU LEU LEU ASN SEQRES 16 A 419 PRO GLU ASP ASP LEU LEU PRO GLY LYS ILE ARG ASP SER SEQRES 17 A 419 ASN ARG SER THR LEU LEU ALA THR ILE GLN GLU HIS GLY SEQRES 18 A 419 TYR PRO THR ILE ASN LEU GLY ILE VAL GLY ASP ASN PRO SEQRES 19 A 419 ASP ASP LEU LEU ASN ALA LEU ASN GLU GLY ILE SER ARG SEQRES 20 A 419 ALA ASP VAL ILE ILE THR SER GLY GLY VAL SER MET GLY SEQRES 21 A 419 GLU LYS ASP TYR LEU LYS GLN VAL LEU ASP ILE ASP LEU SEQRES 22 A 419 HIS ALA GLN ILE HIS PHE GLY ARG VAL PHE MET LYS PRO SEQRES 23 A 419 GLY LEU PRO THR THR PHE ALA THR LEU ASP ILE ASP GLY SEQRES 24 A 419 VAL ARG LYS ILE ILE PHE ALA LEU PRO GLY ASN PRO VAL SEQRES 25 A 419 SER ALA VAL VAL THR CYS ASN LEU PHE VAL VAL PRO ALA SEQRES 26 A 419 LEU ARG LYS MET GLN GLY ILE LEU ASP PRO ARG PRO THR SEQRES 27 A 419 ILE ILE LYS ALA ARG LEU SER CYS ASP VAL LYS LEU ASP SEQRES 28 A 419 PRO ARG PRO GLU TYR HIS ARG CYS ILE LEU THR TRP HIS SEQRES 29 A 419 HIS GLN GLU PRO LEU PRO TRP ALA GLN SER THR GLY ASN SEQRES 30 A 419 GLN MET SER SER ARG LEU MET SER MET ARG SER ALA ASN SEQRES 31 A 419 GLY LEU LEU MET LEU PRO PRO LYS THR GLU GLN TYR VAL SEQRES 32 A 419 GLU LEU HIS LYS GLY GLU VAL VAL ASP VAL MET VAL ILE SEQRES 33 A 419 GLY ARG LEU SEQRES 1 C 15 ASP PHE SER ILE VAL GLY SER LEU PRO ARG ASP PHE GLU SEQRES 2 C 15 LEU SER HET GOL A 801 14 HET GOL A 802 14 HET GOL A 803 14 HET GOL A 804 14 HET GOL A 805 14 HET GOL A 806 14 HET GOL A 807 14 HET GOL A 808 14 HET ACT A 809 7 HETNAM GOL GLYCEROL HETNAM ACT ACETATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 8(C3 H8 O3) FORMUL 11 ACT C2 H3 O2 1- FORMUL 12 HOH *174(H2 O) HELIX 1 AA1 SER A 325 THR A 337 1 13 HELIX 2 AA2 ARG A 348 GLY A 350 5 3 HELIX 3 AA3 ARG A 379 GLY A 383 5 5 HELIX 4 AA4 GLY A 478 GLY A 489 1 12 HELIX 5 AA5 SER A 525 HIS A 537 1 13 HELIX 6 AA6 ASN A 550 ALA A 565 1 16 HELIX 7 AA7 TYR A 581 ASP A 589 1 9 HELIX 8 AA8 ASN A 627 GLN A 647 1 21 HELIX 9 AA9 LEU A 700 ARG A 704 5 5 SHEET 1 AA1 2 THR A 342 ASN A 346 0 SHEET 2 AA1 2 GLU A 492 ASN A 496 -1 O VAL A 495 N GLU A 343 SHEET 1 AA2 2 VAL A 359 TYR A 360 0 SHEET 2 AA2 2 CYS A 469 LEU A 471 -1 O LEU A 471 N VAL A 359 SHEET 1 AA3 2 ALA A 370 SER A 371 0 SHEET 2 AA3 2 ILE A 457 ARG A 458 -1 O ARG A 458 N ALA A 370 SHEET 1 AA4 6 ALA A 423 GLN A 426 0 SHEET 2 AA4 6 GLY A 375 VAL A 378 -1 N VAL A 378 O ALA A 423 SHEET 3 AA4 6 GLN A 407 VAL A 411 -1 O MET A 409 N ALA A 377 SHEET 4 AA4 6 GLY A 385 SER A 393 1 N SER A 393 O ARG A 410 SHEET 5 AA4 6 GLU A 442 ILE A 447 -1 O VAL A 445 N ARG A 387 SHEET 6 AA4 6 THR A 430 GLU A 435 -1 N GLU A 431 O ARG A 446 SHEET 1 AA5 6 THR A 541 VAL A 547 0 SHEET 2 AA5 6 VAL A 501 THR A 506 1 N SER A 505 O VAL A 547 SHEET 3 AA5 6 VAL A 567 SER A 571 1 O SER A 571 N THR A 506 SHEET 4 AA5 6 VAL A 617 LEU A 624 1 O LEU A 624 N THR A 570 SHEET 5 AA5 6 THR A 608 ILE A 614 -1 N LEU A 612 O LYS A 619 SHEET 6 AA5 6 GLN A 593 PHE A 596 -1 N GLN A 593 O THR A 611 SHEET 1 AA6 2 LEU A 510 LEU A 511 0 SHEET 2 AA6 2 ILE A 522 ARG A 523 1 O ILE A 522 N LEU A 511 SHEET 1 AA7 6 ILE A 656 LEU A 661 0 SHEET 2 AA7 6 TRP A 688 SER A 691 1 O ALA A 689 N ARG A 660 SHEET 3 AA7 6 GLU A 672 THR A 679 -1 N THR A 679 O TRP A 688 SHEET 4 AA7 6 GLY A 708 LEU A 712 -1 O LEU A 712 N GLU A 672 SHEET 5 AA7 6 VAL A 727 VAL A 732 -1 O MET A 731 N LEU A 709 SHEET 6 AA7 6 ILE A 656 LEU A 661 -1 N ALA A 659 O VAL A 728 SHEET 1 AA8 2 VAL A 665 LYS A 666 0 SHEET 2 AA8 2 GLU A 721 LEU A 722 -1 O LEU A 722 N VAL A 665 CISPEP 1 LEU A 365 PRO A 366 0 -10.72 CISPEP 2 LYS A 602 PRO A 603 0 -7.95 SITE 1 AC1 3 ASP A 664 GLN A 718 HIS A 723 SITE 1 AC2 3 ALA A 356 ASN A 496 HOH A1070 SITE 1 AC3 7 VAL A 500 ARG A 564 ALA A 565 ASP A 566 SITE 2 AC3 7 LYS A 619 ACT A 809 HOH A 980 SITE 1 AC4 4 THR A 342 GLU A 343 GLU A 494 SER A 563 SITE 1 AC5 3 VAL A 359 TYR A 360 HOH A 998 SITE 1 AC6 8 GLY A 474 ILE A 649 LEU A 650 ASP A 651 SITE 2 AC6 8 ARG A 704 HOH A 903 HOH A 940 HOH A 941 SITE 1 AC7 8 GLU A 536 SER A 705 ALA A 706 ILE A 733 SITE 2 AC7 8 GLY A 734 GOL A 808 HOH A 902 HOH A 914 SITE 1 AC8 10 GLY A 478 PRO A 479 SER A 480 GLU A 481 SITE 2 AC8 10 ARG A 675 SER A 705 ALA A 706 GOL A 807 SITE 3 AC8 10 HOH A 911 HOH A 926 SITE 1 AC9 5 GLU A 343 ARG A 353 LYS A 497 PHE A 498 SITE 2 AC9 5 GOL A 803 CRYST1 85.660 100.060 117.500 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011674 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009994 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008511 0.00000