HEADER SOLUTE-BINDING PROTEIN 18-APR-14 4PDH TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 POLAROMONAS SP JS666 (BPRO_1871, TARGET EFI-510164) BOUND TO D- TITLE 3 ERYTHRONATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER, DCTP SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: POLAROMONAS SP. JS666; SOURCE 3 ORGANISM_TAXID: 296591; SOURCE 4 GENE: BPRO_1871; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, SOLUTE-BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 5 27-SEP-23 4PDH 1 REMARK REVDAT 4 25-DEC-19 4PDH 1 SEQRES REVDAT 3 27-SEP-17 4PDH 1 SOURCE JRNL REMARK REVDAT 2 25-FEB-15 4PDH 1 JRNL REVDAT 1 14-MAY-14 4PDH 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.48 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 33198 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.139 REMARK 3 R VALUE (WORKING SET) : 0.137 REMARK 3 FREE R VALUE : 0.171 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1680 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 39.4842 - 4.1196 0.99 2763 158 0.1364 0.1724 REMARK 3 2 4.1196 - 3.2703 1.00 2666 148 0.1195 0.1394 REMARK 3 3 3.2703 - 2.8571 1.00 2666 126 0.1462 0.1894 REMARK 3 4 2.8571 - 2.5959 1.00 2621 152 0.1447 0.1708 REMARK 3 5 2.5959 - 2.4099 1.00 2607 145 0.1442 0.1893 REMARK 3 6 2.4099 - 2.2678 1.00 2595 142 0.1298 0.1832 REMARK 3 7 2.2678 - 2.1542 1.00 2628 130 0.1232 0.1462 REMARK 3 8 2.1542 - 2.0605 1.00 2606 138 0.1235 0.1679 REMARK 3 9 2.0605 - 1.9811 1.00 2590 136 0.1347 0.1580 REMARK 3 10 1.9811 - 1.9128 1.00 2579 135 0.1483 0.2009 REMARK 3 11 1.9128 - 1.8530 1.00 2614 127 0.1617 0.2147 REMARK 3 12 1.8530 - 1.8000 1.00 2583 143 0.1790 0.1974 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.190 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.16 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2393 REMARK 3 ANGLE : 1.255 3227 REMARK 3 CHIRALITY : 0.073 356 REMARK 3 PLANARITY : 0.008 423 REMARK 3 DIHEDRAL : 14.437 902 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 35 THROUGH 74 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0031 -10.2961 -23.1868 REMARK 3 T TENSOR REMARK 3 T11: 0.1479 T22: 0.1220 REMARK 3 T33: 0.1833 T12: 0.0153 REMARK 3 T13: -0.0159 T23: -0.0353 REMARK 3 L TENSOR REMARK 3 L11: 0.2368 L22: 2.0183 REMARK 3 L33: 0.7098 L12: 0.4437 REMARK 3 L13: 0.0739 L23: 0.8906 REMARK 3 S TENSOR REMARK 3 S11: -0.0448 S12: 0.0697 S13: 0.2053 REMARK 3 S21: -0.1699 S22: 0.0780 S23: -0.0916 REMARK 3 S31: -0.2268 S32: 0.0028 S33: -0.0441 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 259 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.8138 -30.9829 -19.9826 REMARK 3 T TENSOR REMARK 3 T11: 0.1023 T22: 0.1087 REMARK 3 T33: 0.0966 T12: 0.0161 REMARK 3 T13: -0.0084 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.5670 L22: 0.7977 REMARK 3 L33: 1.1218 L12: -0.1430 REMARK 3 L13: -0.1210 L23: 0.2858 REMARK 3 S TENSOR REMARK 3 S11: -0.0286 S12: -0.0815 S13: -0.0264 REMARK 3 S21: 0.1616 S22: 0.0489 S23: -0.0567 REMARK 3 S31: 0.1617 S32: 0.0174 S33: -0.0212 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 260 THROUGH 294 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.8257 -19.1357 -24.4833 REMARK 3 T TENSOR REMARK 3 T11: 0.1098 T22: 0.1305 REMARK 3 T33: 0.1288 T12: 0.0337 REMARK 3 T13: -0.0067 T23: -0.0325 REMARK 3 L TENSOR REMARK 3 L11: 0.6037 L22: 2.0117 REMARK 3 L33: 2.0872 L12: 0.6112 REMARK 3 L13: 0.5871 L23: 1.6966 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.0437 S13: 0.0923 REMARK 3 S21: 0.0284 S22: -0.0788 S23: 0.1287 REMARK 3 S31: -0.1388 S32: -0.2210 S33: 0.0958 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 295 THROUGH 335 ) REMARK 3 ORIGIN FOR THE GROUP (A): -24.8028 -41.1723 -15.5663 REMARK 3 T TENSOR REMARK 3 T11: 0.2874 T22: 0.2363 REMARK 3 T33: 0.2101 T12: -0.0610 REMARK 3 T13: 0.0289 T23: -0.0101 REMARK 3 L TENSOR REMARK 3 L11: 0.2584 L22: 0.0907 REMARK 3 L33: 1.5750 L12: 0.0456 REMARK 3 L13: -0.4725 L23: 0.0676 REMARK 3 S TENSOR REMARK 3 S11: 0.0038 S12: -0.0292 S13: -0.0769 REMARK 3 S21: 0.1149 S22: 0.0137 S23: 0.1475 REMARK 3 S31: 0.3944 S32: -0.4635 S33: -0.0270 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PDH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201189. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33226 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 89.640 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.10 REMARK 200 R MERGE FOR SHELL (I) : 0.62600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 4PDD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (36.4 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT, 1 MM D-ERYTHRONATE); RESERVOIR (60 %(V/V) REMARK 280 TACSIMATE); CRYOPROTECTION (100% TASCIMATE PH 7.0), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 21.07650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 56.26950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 74.14200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 21.07650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 56.26950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 74.14200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 21.07650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 56.26950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 74.14200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 21.07650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 56.26950 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 74.14200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 577 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 127 OE1 GLU A 154 1.59 REMARK 500 O HOH A 567 O HOH A 596 1.95 REMARK 500 O HOH A 664 O HOH A 757 2.00 REMARK 500 O HOH A 698 O HOH A 763 2.05 REMARK 500 O HOH A 824 O HOH A 849 2.10 REMARK 500 O HOH A 564 O HOH A 744 2.11 REMARK 500 O HOH A 727 O HOH A 755 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 538 O HOH A 565 8544 2.00 REMARK 500 O HOH A 570 O HOH A 587 8544 2.08 REMARK 500 O HOH A 504 O HOH A 576 3455 2.10 REMARK 500 O HOH A 501 O HOH A 552 8544 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 852 DISTANCE = 6.27 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EAX A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510164 RELATED DB: TARGETTRACK DBREF 4PDH A 35 335 UNP Q12CD8 Q12CD8_POLSJ 23 323 SEQRES 1 A 301 PCA THR THR MET LYS ILE SER ILE SER THR SER GLN ASN SEQRES 2 A 301 SER HIS GLN GLY VAL ALA ILE ASP THR PHE ALA LYS GLU SEQRES 3 A 301 VAL GLU LYS ARG THR GLY GLY ARG TYR LYS VAL GLN THR SEQRES 4 A 301 PHE TYR SER GLY ALA LEU GLY GLY GLU ARG GLU SER ILE SEQRES 5 A 301 GLU ALA VAL GLN LEU GLY THR GLN GLU LEU ALA PHE SER SEQRES 6 A 301 SER THR GLY PRO VAL PRO ASN PHE VAL PRO GLU THR LYS SEQRES 7 A 301 ILE LEU ASP VAL PRO PHE LEU PHE ARG ASP LYS ALA HIS SEQRES 8 A 301 ALA ARG ALA VAL LEU ASP GLY PRO ILE GLY GLN ASP LEU SEQRES 9 A 301 LEU GLY LYS PHE ASP ALA LYS GLY PHE LYS ALA LEU ALA SEQRES 10 A 301 TRP GLY GLU ASN GLY PHE ARG HIS MET THR ASN SER LYS SEQRES 11 A 301 ARG ASP VAL LYS GLY PRO GLU ASP LEU LYS GLY LEU LYS SEQRES 12 A 301 MET ARG THR MET GLU ASN PRO VAL HIS ILE ALA ALA TYR SEQRES 13 A 301 LYS GLY PHE GLY ILE ILE THR THR PRO MET ALA PHE PRO SEQRES 14 A 301 GLU VAL PHE THR ALA LEU GLN GLN GLY THR VAL ASP GLY SEQRES 15 A 301 GLN GLU ASN PRO LEU SER VAL ILE ILE ALA SER LYS PHE SEQRES 16 A 301 ASP GLN VAL GLN LYS HIS LEU SER LEU THR GLY HIS VAL SEQRES 17 A 301 TYR SER PRO CYS ILE TRP VAL MET ASN LYS ALA VAL PHE SEQRES 18 A 301 ASP LYS LEU SER ALA ALA ASP LYS GLN ALA PHE LEU ASP SEQRES 19 A 301 ALA ALA LYS GLU GLY THR LYS ALA ASN ARG ALA ARG VAL SEQRES 20 A 301 ASP GLU ASP ASP ALA LYS GLY VAL ALA ASP LEU ARG ALA SEQRES 21 A 301 LYS GLY MET THR VAL ILE ASP ASN ILE ASP LYS SER LYS SEQRES 22 A 301 PHE VAL THR ALA LEU ALA PRO VAL ASN ALA GLU PHE GLU SEQRES 23 A 301 LYS GLN PHE GLY LYS ALA ASN ILE GLU LYS ILE ARG ASN SEQRES 24 A 301 TYR LYS MODRES 4PDH PCA A 35 GLN MODIFIED RESIDUE HET PCA A 35 8 HET EAX A 401 9 HETNAM PCA PYROGLUTAMIC ACID HETNAM EAX (2R,3R)-2,3,4-TRIHYDROXYBUTANOIC ACID HETSYN EAX ERYTHRONIC ACID FORMUL 1 PCA C5 H7 N O3 FORMUL 2 EAX C4 H8 O5 FORMUL 3 HOH *367(H2 O) HELIX 1 AA1 SER A 48 THR A 65 1 18 HELIX 2 AA2 GLY A 81 GLY A 92 1 12 HELIX 3 AA3 PRO A 103 PHE A 107 5 5 HELIX 4 AA4 VAL A 108 VAL A 116 5 9 HELIX 5 AA5 ASP A 122 GLY A 132 1 11 HELIX 6 AA6 GLY A 132 LYS A 141 1 10 HELIX 7 AA7 PHE A 142 LYS A 145 5 4 HELIX 8 AA8 GLY A 169 LEU A 173 5 5 HELIX 9 AA9 ASN A 183 PHE A 193 1 11 HELIX 10 AB1 ALA A 201 PRO A 203 5 3 HELIX 11 AB2 GLU A 204 GLN A 211 1 8 HELIX 12 AB3 PRO A 220 SER A 227 1 8 HELIX 13 AB4 LYS A 228 VAL A 232 5 5 HELIX 14 AB5 LYS A 252 LYS A 257 1 6 HELIX 15 AB6 SER A 259 LYS A 295 1 37 HELIX 16 AB7 ASP A 304 LEU A 312 1 9 HELIX 17 AB8 LEU A 312 GLY A 324 1 13 HELIX 18 AB9 GLY A 324 ASN A 333 1 10 SHEET 1 AA1 6 TYR A 69 PHE A 74 0 SHEET 2 AA1 6 THR A 36 SER A 41 1 N MET A 38 O GLN A 72 SHEET 3 AA1 6 LEU A 96 SER A 100 1 O LEU A 96 N LYS A 39 SHEET 4 AA1 6 HIS A 235 ASN A 251 -1 O ILE A 247 N SER A 99 SHEET 5 AA1 6 PHE A 147 ASN A 162 -1 N GLY A 153 O CYS A 246 SHEET 6 AA1 6 GLY A 216 ASN A 219 -1 O GLN A 217 N THR A 161 SHEET 1 AA2 5 TYR A 69 PHE A 74 0 SHEET 2 AA2 5 THR A 36 SER A 41 1 N MET A 38 O GLN A 72 SHEET 3 AA2 5 LEU A 96 SER A 100 1 O LEU A 96 N LYS A 39 SHEET 4 AA2 5 HIS A 235 ASN A 251 -1 O ILE A 247 N SER A 99 SHEET 5 AA2 5 THR A 298 ILE A 300 1 O ILE A 300 N LEU A 236 SHEET 1 AA3 2 LYS A 177 THR A 180 0 SHEET 2 AA3 2 ILE A 196 PRO A 199 1 O THR A 198 N MET A 178 LINK C PCA A 35 N THR A 36 1555 1555 1.33 SITE 1 AC1 10 GLN A 50 GLU A 82 SER A 100 ASN A 155 SITE 2 AC1 10 ARG A 158 ARG A 179 MET A 181 PHE A 202 SITE 3 AC1 10 ASN A 219 HOH A 611 CRYST1 42.153 112.539 148.284 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023723 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008886 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006744 0.00000 HETATM 1 N PCA A 35 -6.589 3.010 -18.389 1.00 48.62 N ANISOU 1 N PCA A 35 6327 5102 7043 -123 16 -584 N HETATM 2 CA PCA A 35 -7.222 1.700 -18.477 1.00 51.77 C ANISOU 2 CA PCA A 35 6689 5585 7398 -75 -22 -567 C HETATM 3 CB PCA A 35 -7.727 1.415 -19.888 1.00 54.49 C ANISOU 3 CB PCA A 35 7095 5936 7675 -84 3 -497 C HETATM 4 CG PCA A 35 -7.141 2.490 -20.781 1.00 57.08 C ANISOU 4 CG PCA A 35 7509 6177 8001 -159 72 -477 C HETATM 5 CD PCA A 35 -6.550 3.450 -19.785 1.00 57.72 C ANISOU 5 CD PCA A 35 7568 6208 8153 -174 76 -530 C HETATM 6 OE PCA A 35 -6.088 4.530 -20.145 1.00 66.76 O ANISOU 6 OE PCA A 35 8780 7273 9312 -230 128 -526 O HETATM 7 C PCA A 35 -6.270 0.585 -18.089 1.00 42.00 C ANISOU 7 C PCA A 35 5356 4406 6197 -98 -27 -634 C HETATM 8 O PCA A 35 -5.064 0.672 -18.309 1.00 41.45 O ANISOU 8 O PCA A 35 5248 4318 6185 -166 20 -686 O