HEADER TRANSPORT PROTEIN 19-APR-14 4PDM TITLE CRYSTAL STRUCTURE OF K+ SELECTIVE NAK MUTANT IN RUBIDIUM COMPND MOL_ID: 1; COMPND 2 MOLECULE: POTASSIUM CHANNEL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-110; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS CEREUS; SOURCE 3 ORGANISM_TAXID: 226900; SOURCE 4 STRAIN: ATCC 14579 / DSM 31; SOURCE 5 GENE: BC_0669; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SG13009; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PQE60 KEYWDS BACILLUS CEREUS, BINDING SITES, ELECTROPHYSIOLOGY, IONS, POTASSIUM, KEYWDS 2 POTASSIUM CHANNELS, SODIUM, RUBIDIUM, BLOCKAGE, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.LAM REVDAT 4 27-SEP-23 4PDM 1 REMARK LINK REVDAT 3 20-NOV-19 4PDM 1 REMARK REVDAT 2 27-SEP-17 4PDM 1 SOURCE JRNL REMARK REVDAT 1 09-JUL-14 4PDM 0 JRNL AUTH Y.LAM,W.ZENG,D.B.SAUER,Y.JIANG JRNL TITL HIGH RESOLUTION STRUCTURAL VIEWS OF RUBIDIUM, CESIUM AND JRNL TITL 2 BARIUM BINDING WITHIN A POTASSIUM SELECTIVE CHANNEL FILTER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 27778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 1395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 34.0134 - 3.4030 0.99 2654 139 0.1975 0.2199 REMARK 3 2 3.4030 - 2.7014 1.00 2663 135 0.1977 0.2559 REMARK 3 3 2.7014 - 2.3600 1.00 2627 151 0.1916 0.2006 REMARK 3 4 2.3600 - 2.1443 1.00 2629 150 0.1986 0.2296 REMARK 3 5 2.1443 - 1.9906 1.00 2634 128 0.2032 0.2286 REMARK 3 6 1.9906 - 1.8733 1.00 2609 158 0.2221 0.2359 REMARK 3 7 1.8733 - 1.7794 1.00 2677 116 0.2309 0.2966 REMARK 3 8 1.7794 - 1.7020 1.00 2640 150 0.2542 0.2825 REMARK 3 9 1.7020 - 1.6365 1.00 2631 119 0.2499 0.2959 REMARK 3 10 1.6365 - 1.5800 1.00 2619 149 0.2747 0.3107 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.980 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 1542 REMARK 3 ANGLE : 1.065 2104 REMARK 3 CHIRALITY : 0.042 262 REMARK 3 PLANARITY : 0.006 250 REMARK 3 DIHEDRAL : 13.699 528 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -6.2467 -9.4580 0.5023 REMARK 3 T TENSOR REMARK 3 T11: 0.1018 T22: 0.1204 REMARK 3 T33: 0.1265 T12: -0.0066 REMARK 3 T13: 0.0511 T23: 0.0214 REMARK 3 L TENSOR REMARK 3 L11: -0.0954 L22: 0.3138 REMARK 3 L33: 0.1198 L12: 0.0181 REMARK 3 L13: -0.1125 L23: 0.0143 REMARK 3 S TENSOR REMARK 3 S11: 0.0017 S12: -0.0060 S13: 0.0525 REMARK 3 S21: 0.0114 S22: -0.0442 S23: -0.0281 REMARK 3 S31: 0.1059 S32: -0.0120 S33: -0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201190. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-JUN-09 REMARK 200 TEMPERATURE (KELVIN) : 78 REMARK 200 PH : 6.0-7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27782 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.580 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04900 REMARK 200 FOR THE DATA SET : 48.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3OUF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 65%MPD, 100MM KCL, 100MM MES, 4MM N REMARK 280 -DECYL-BETA-D-MALTOSIDE, PH 6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 34.00550 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 34.00550 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.67300 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 34.00550 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 34.00550 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.67300 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 34.00550 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 34.00550 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.67300 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 34.00550 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 34.00550 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.67300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -146.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -231.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 RB RB A 201 LIES ON A SPECIAL POSITION. REMARK 375 RB RB A 202 LIES ON A SPECIAL POSITION. REMARK 375 RB RB A 203 LIES ON A SPECIAL POSITION. REMARK 375 RB RB B 201 LIES ON A SPECIAL POSITION. REMARK 375 RB RB B 202 LIES ON A SPECIAL POSITION. REMARK 375 RB RB B 203 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 325 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 327 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 333 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 311 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 324 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 18 REMARK 465 ALA A 19 REMARK 465 LYS A 20 REMARK 465 ARG A 114 REMARK 465 MET B 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 316 O HOH A 344 2.06 REMARK 500 O HOH A 342 O HOH A 343 2.07 REMARK 500 O HOH A 309 O HOH A 320 2.14 REMARK 500 O HOH A 343 O HOH A 347 2.14 REMARK 500 O HOH A 343 O HOH A 348 2.16 REMARK 500 O HOH A 315 O HOH A 317 2.17 REMARK 500 O ILE B 86 O HOH B 301 2.17 REMARK 500 O ILE A 86 O HOH A 301 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 305 O HOH B 306 3555 2.01 REMARK 500 O HOH B 319 O HOH B 319 3555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 50 39.79 -73.22 REMARK 500 ILE A 51 -33.22 -130.30 REMARK 500 VAL A 102 -47.22 -140.11 REMARK 500 VAL B 102 -56.10 -120.77 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 327 DISTANCE = 7.32 ANGSTROMS REMARK 525 HOH A 333 DISTANCE = 5.84 ANGSTROMS REMARK 525 HOH A 353 DISTANCE = 9.24 ANGSTROMS REMARK 525 HOH A 355 DISTANCE = 8.18 ANGSTROMS REMARK 525 HOH B 319 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH B 324 DISTANCE = 7.40 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB A 202 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 63 O REMARK 620 2 THR A 63 O 0.0 REMARK 620 3 VAL A 64 O 67.8 67.8 REMARK 620 4 VAL A 64 O 67.8 67.8 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB A 203 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 63 O REMARK 620 2 THR A 63 OG1 63.2 REMARK 620 3 THR A 63 O 0.0 63.2 REMARK 620 4 THR A 63 OG1 63.2 0.0 63.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB A 201 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY A 65 O REMARK 620 2 GLY A 65 O 0.0 REMARK 620 3 TYR A 66 O 69.4 69.4 REMARK 620 4 TYR A 66 O 69.4 69.4 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB B 201 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 63 O REMARK 620 2 THR B 63 OG1 61.7 REMARK 620 3 THR B 63 O 0.0 61.7 REMARK 620 4 THR B 63 OG1 61.7 0.0 61.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB B 202 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 63 O REMARK 620 2 THR B 63 O 0.0 REMARK 620 3 VAL B 64 O 68.3 68.3 REMARK 620 4 VAL B 64 O 68.3 68.3 0.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 RB B 203 RB REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLY B 65 O REMARK 620 2 GLY B 65 O 0.0 REMARK 620 3 TYR B 66 O 66.6 66.6 REMARK 620 4 TYR B 66 O 66.6 66.6 0.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RB A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RB A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RB A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RB B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RB B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue RB B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MPD B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PDL RELATED DB: PDB REMARK 900 RELATED ID: 4PDR RELATED DB: PDB DBREF 4PDM A 20 110 UNP Q81HW2 Q81HW2_BACCR 20 110 DBREF 4PDM B 20 110 UNP Q81HW2 Q81HW2_BACCR 20 110 SEQADV 4PDM MET A 18 UNP Q81HW2 INITIATING METHIONINE SEQADV 4PDM ALA A 19 UNP Q81HW2 EXPRESSION TAG SEQADV 4PDM TYR A 66 UNP Q81HW2 ASP 66 ENGINEERED MUTATION SEQADV 4PDM ASP A 68 UNP Q81HW2 ASN 68 ENGINEERED MUTATION SEQADV 4PDM LEU A 111 UNP Q81HW2 EXPRESSION TAG SEQADV 4PDM VAL A 112 UNP Q81HW2 EXPRESSION TAG SEQADV 4PDM PRO A 113 UNP Q81HW2 EXPRESSION TAG SEQADV 4PDM ARG A 114 UNP Q81HW2 EXPRESSION TAG SEQADV 4PDM MET B 18 UNP Q81HW2 INITIATING METHIONINE SEQADV 4PDM ALA B 19 UNP Q81HW2 EXPRESSION TAG SEQADV 4PDM TYR B 66 UNP Q81HW2 ASP 66 ENGINEERED MUTATION SEQADV 4PDM ASP B 68 UNP Q81HW2 ASN 68 ENGINEERED MUTATION SEQADV 4PDM LEU B 111 UNP Q81HW2 EXPRESSION TAG SEQADV 4PDM VAL B 112 UNP Q81HW2 EXPRESSION TAG SEQADV 4PDM PRO B 113 UNP Q81HW2 EXPRESSION TAG SEQADV 4PDM ARG B 114 UNP Q81HW2 EXPRESSION TAG SEQRES 1 A 97 MET ALA LYS ASP LYS GLU PHE GLN VAL LEU PHE VAL LEU SEQRES 2 A 97 THR ILE LEU THR LEU ILE SER GLY THR ILE PHE TYR SER SEQRES 3 A 97 THR VAL GLU GLY LEU ARG PRO ILE ASP ALA LEU TYR PHE SEQRES 4 A 97 SER VAL VAL THR LEU THR THR VAL GLY TYR GLY ASP PHE SEQRES 5 A 97 SER PRO GLN THR ASP PHE GLY LYS ILE PHE THR ILE LEU SEQRES 6 A 97 TYR ILE PHE ILE GLY ILE GLY LEU VAL PHE GLY PHE ILE SEQRES 7 A 97 HIS LYS LEU ALA VAL ASN VAL GLN LEU PRO SER ILE LEU SEQRES 8 A 97 SER ASN LEU VAL PRO ARG SEQRES 1 B 97 MET ALA LYS ASP LYS GLU PHE GLN VAL LEU PHE VAL LEU SEQRES 2 B 97 THR ILE LEU THR LEU ILE SER GLY THR ILE PHE TYR SER SEQRES 3 B 97 THR VAL GLU GLY LEU ARG PRO ILE ASP ALA LEU TYR PHE SEQRES 4 B 97 SER VAL VAL THR LEU THR THR VAL GLY TYR GLY ASP PHE SEQRES 5 B 97 SER PRO GLN THR ASP PHE GLY LYS ILE PHE THR ILE LEU SEQRES 6 B 97 TYR ILE PHE ILE GLY ILE GLY LEU VAL PHE GLY PHE ILE SEQRES 7 B 97 HIS LYS LEU ALA VAL ASN VAL GLN LEU PRO SER ILE LEU SEQRES 8 B 97 SER ASN LEU VAL PRO ARG HET RB A 201 1 HET RB A 202 1 HET RB A 203 1 HET MPD A 204 8 HET RB B 201 1 HET RB B 202 1 HET RB B 203 1 HET MPD B 204 8 HET MPD B 205 8 HETNAM RB RUBIDIUM ION HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 3 RB 6(RB 1+) FORMUL 6 MPD 3(C6 H14 O2) FORMUL 12 HOH *79(H2 O) HELIX 1 AA1 ASP A 21 GLU A 46 1 26 HELIX 2 AA2 ILE A 51 THR A 62 1 12 HELIX 3 AA3 THR A 73 VAL A 102 1 30 HELIX 4 AA4 VAL A 102 ASN A 110 1 9 HELIX 5 AA5 LYS B 20 VAL B 45 1 26 HELIX 6 AA6 ARG B 49 THR B 62 1 14 HELIX 7 AA7 THR B 73 VAL B 102 1 30 HELIX 8 AA8 VAL B 102 LEU B 111 1 10 LINK O THR A 63 RB RB A 202 1555 1555 3.04 LINK O THR A 63 RB RB A 202 1555 2555 3.04 LINK O THR A 63 RB RB A 203 1555 1555 2.94 LINK OG1 THR A 63 RB RB A 203 1555 1555 2.91 LINK O THR A 63 RB RB A 203 1555 2555 2.94 LINK OG1 THR A 63 RB RB A 203 1555 2555 2.91 LINK O VAL A 64 RB RB A 202 1555 1555 2.83 LINK O VAL A 64 RB RB A 202 1555 2555 2.83 LINK O GLY A 65 RB RB A 201 1555 1555 2.88 LINK O GLY A 65 RB RB A 201 1555 2555 2.88 LINK O TYR A 66 RB RB A 201 1555 1555 3.07 LINK O TYR A 66 RB RB A 201 1555 2555 3.07 LINK O THR B 63 RB RB B 201 1555 1555 2.94 LINK OG1 THR B 63 RB RB B 201 1555 1555 2.90 LINK O THR B 63 RB RB B 201 1555 2555 2.94 LINK OG1 THR B 63 RB RB B 201 1555 2555 2.90 LINK O THR B 63 RB RB B 202 1555 1555 3.05 LINK O THR B 63 RB RB B 202 1555 2555 3.05 LINK O VAL B 64 RB RB B 202 1555 1555 2.89 LINK O VAL B 64 RB RB B 202 1555 2555 2.89 LINK O GLY B 65 RB RB B 203 1555 1555 2.95 LINK O GLY B 65 RB RB B 203 1555 2555 2.95 LINK O TYR B 66 RB RB B 203 1555 1555 2.99 LINK O TYR B 66 RB RB B 203 1555 2555 2.99 SITE 1 AC1 2 GLY A 65 TYR A 66 SITE 1 AC2 2 THR A 63 VAL A 64 SITE 1 AC3 1 THR A 63 SITE 1 AC4 6 PHE A 79 ILE A 86 HOH A 346 LEU B 33 SITE 2 AC4 6 ILE B 36 SER B 37 SITE 1 AC5 1 THR B 63 SITE 1 AC6 2 THR B 63 VAL B 64 SITE 1 AC7 2 GLY B 65 TYR B 66 SITE 1 AC8 3 GLY B 93 ALA B 99 GLN B 103 SITE 1 AC9 5 PHE B 28 ILE B 32 PHE B 85 PHE B 94 SITE 2 AC9 5 HOH B 315 CRYST1 68.011 68.011 89.346 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014704 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014704 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011192 0.00000