HEADER LYASE 24-APR-14 4PEN OBSLTE 12-AUG-15 4PEN 5CWA TITLE STRUCTURE OF ANTHRANILATE SYNTHASE COMPONENT I (TRPE) FROM TITLE 2 MYCOBACTERIUM TUBERCULOSIS WITH INHIBITOR BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: ANTHRANILATE SYNTHASE COMPONENT 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-511; COMPND 5 SYNONYM: ANTHRANILATE SYNTHASE I, TRPE, ASI; COMPND 6 EC: 4.1.3.27; COMPND 7 ENGINEERED: YES; COMPND 8 OTHER_DETAILS: D TO H MUTATION FROM PUBLISHED SEQUENCE AT POSITION 2 COMPND 9 DUE TO CLONING ARTEFACT, ALSO AFTER RTEV CLEAVAGE AN ADDITIONAL GA COMPND 10 REMAINS ON CONSTRUCT USED PRIOR TO START M (NOT SHOWN IN SEQUENCE COMPND 11 ABOVE) SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83331; SOURCE 4 STRAIN: CDC 1551 / OSHKOSH; SOURCE 5 GENE: TRPE, MT1644; SOURCE 6 EXPRESSION_SYSTEM: MYCOBACTERIUM SMEGMATIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1772 KEYWDS LYASE, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR J.M.JOHNSTON,G.BASHIRI,G.L.EVANS,J.S.LOTT,E.N.BAKER REVDAT 4 08-NOV-23 4PEN 1 OBSLTE REMARK REVDAT 3 23-JUN-21 4PEN 1 OBSLTE REVDAT 2 12-AUG-15 4PEN 1 REVDAT 1 20-MAY-15 4PEN 0 JRNL AUTH J.M.JOHNSTON,G.BASHIRI,G.L.EVANS,E.M.BULLOCH,A.CASTELL, JRNL AUTH 2 S.KLEINBOELTING,A.MANOS-TURVEY,D.C.GOLDSTONE,R.J.RAMSAY, JRNL AUTH 3 R.J.PAYNE,J.S.LOTT,E.N.BAKER JRNL TITL STRUCTURE AND FUNCTIONAL CHARACTERIZATION OF ANTHRANILATE JRNL TITL 2 SYNTHASE COMPLEX FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0069 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 135.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 54282 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.209 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2767 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.16 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3748 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.57 REMARK 3 BIN R VALUE (WORKING SET) : 0.3610 REMARK 3 BIN FREE R VALUE SET COUNT : 187 REMARK 3 BIN FREE R VALUE : 0.3660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3825 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 205 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 0.79000 REMARK 3 B33 (A**2) : -2.57000 REMARK 3 B12 (A**2) : 0.40000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.152 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.143 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.884 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3992 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3761 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5448 ; 1.527 ; 1.975 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8614 ; 0.820 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 513 ; 6.789 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;33.997 ;23.146 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 607 ;16.515 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;17.422 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 623 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4583 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 898 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2031 ; 3.771 ; 5.479 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2030 ; 3.770 ; 5.477 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2539 ; 5.354 ; 8.201 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4PEN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 5 REMARK 5 OBSOLETION UPON AUTHORS REQUEST, NO KNOWN SUPERSEDING ENTRY REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201147. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8983 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54312 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 135.452 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 21.90 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.15800 REMARK 200 FOR THE DATA SET : 14.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 22.40 REMARK 200 R MERGE FOR SHELL (I) : 3.79400 REMARK 200 R SYM FOR SHELL (I) : 3.79400 REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 11.0.02 REMARK 200 STARTING MODEL: 1QDL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.6-1.0 M AMMONIUM SULFATE, 0.1 M BIS REMARK 280 -TRIS PROPANE, PH 7, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+1/3 REMARK 290 11555 -X+Y,Y,-Z REMARK 290 12555 X,X-Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.79467 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 85.58933 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 42.79467 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 85.58933 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 42.79467 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 85.58933 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 42.79467 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 85.58933 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6460 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37690 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -64.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.20300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -135.45157 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 ARG A 116 REMARK 465 GLN A 117 REMARK 465 SER A 118 REMARK 465 GLU A 119 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 226 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 330 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 340 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 32 59.02 -145.56 REMARK 500 SER A 62 112.29 80.37 REMARK 500 SER A 62 112.29 81.09 REMARK 500 ALA A 71 44.15 -96.98 REMARK 500 THR A 78 -158.31 -145.27 REMARK 500 GLU A 314 52.72 38.51 REMARK 500 ARG A 330 73.40 -117.90 REMARK 500 THR A 331 -138.79 -147.13 REMARK 500 ASP A 332 -36.03 -35.74 REMARK 500 SER A 417 -80.65 -147.23 REMARK 500 ASN A 465 58.46 35.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 331 ASP A 332 -140.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 767 DISTANCE = 6.48 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 0GA A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IND A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PYR A 607 DBREF 4PEN A 1 511 UNP P9WFX2 TRPE_MYCTO 1 511 SEQADV 4PEN ASP A 2 UNP P9WFX2 HIS 2 CLONING ARTIFACT SEQRES 1 A 511 MET ASP ALA ASP LEU ALA ALA THR THR SER ARG GLU ASP SEQRES 2 A 511 PHE ARG LEU LEU ALA ALA GLU HIS ARG VAL VAL PRO VAL SEQRES 3 A 511 THR ARG LYS VAL LEU ALA ASP SER GLU THR PRO LEU SER SEQRES 4 A 511 ALA TYR ARG LYS LEU ALA ALA ASN ARG PRO GLY THR PHE SEQRES 5 A 511 LEU LEU GLU SER ALA GLU ASN GLY ARG SER TRP SER ARG SEQRES 6 A 511 TRP SER PHE ILE GLY ALA GLY ALA PRO THR ALA LEU THR SEQRES 7 A 511 VAL ARG GLU GLY GLN ALA VAL TRP LEU GLY ALA VAL PRO SEQRES 8 A 511 LYS ASP ALA PRO THR GLY GLY ASP PRO LEU ARG ALA LEU SEQRES 9 A 511 GLN VAL THR LEU GLU LEU LEU ALA THR ALA ASP ARG GLN SEQRES 10 A 511 SER GLU PRO GLY LEU PRO PRO LEU SER GLY GLY MET VAL SEQRES 11 A 511 GLY PHE PHE ALA TYR ASP MET VAL ARG ARG LEU GLU ARG SEQRES 12 A 511 LEU PRO GLU ARG ALA VAL ASP ASP LEU CYS LEU PRO ASP SEQRES 13 A 511 MET LEU LEU LEU LEU ALA THR ASP VAL ALA ALA VAL ASP SEQRES 14 A 511 HIS HIS GLU GLY THR ILE THR LEU ILE ALA ASN ALA VAL SEQRES 15 A 511 ASN TRP ASN GLY THR ASP GLU ARG VAL ASP TRP ALA TYR SEQRES 16 A 511 ASP ASP ALA VAL ALA ARG LEU ASP VAL MET THR ALA ALA SEQRES 17 A 511 LEU GLY GLN PRO LEU PRO SER THR VAL ALA THR PHE SER SEQRES 18 A 511 ARG PRO GLU PRO ARG HIS ARG ALA GLN ARG THR VAL GLU SEQRES 19 A 511 GLU TYR GLY ALA ILE VAL GLU TYR LEU VAL ASP GLN ILE SEQRES 20 A 511 ALA ALA GLY GLU ALA PHE GLN VAL VAL PRO SER GLN ARG SEQRES 21 A 511 PHE GLU MET ASP THR ASP VAL ASP PRO ILE ASP VAL TYR SEQRES 22 A 511 ARG ILE LEU ARG VAL THR ASN PRO SER PRO TYR MET TYR SEQRES 23 A 511 LEU LEU GLN VAL PRO ASN SER ASP GLY ALA VAL ASP PHE SEQRES 24 A 511 SER ILE VAL GLY SER SER PRO GLU ALA LEU VAL THR VAL SEQRES 25 A 511 HIS GLU GLY TRP ALA THR THR HIS PRO ILE ALA GLY THR SEQRES 26 A 511 ARG TRP ARG GLY ARG THR ASP ASP GLU ASP VAL LEU LEU SEQRES 27 A 511 GLU LYS GLU LEU LEU ALA ASP ASP LYS GLU ARG ALA GLU SEQRES 28 A 511 HIS LEU MET LEU VAL ASP LEU GLY ARG ASN ASP LEU GLY SEQRES 29 A 511 ARG VAL CYS THR PRO GLY THR VAL ARG VAL GLU ASP TYR SEQRES 30 A 511 SER HIS ILE GLU ARG TYR SER HIS VAL MET HIS LEU VAL SEQRES 31 A 511 SER THR VAL THR GLY LYS LEU GLY GLU GLY ARG THR ALA SEQRES 32 A 511 LEU ASP ALA VAL THR ALA CYS PHE PRO ALA GLY THR LEU SEQRES 33 A 511 SER GLY ALA PRO LYS VAL ARG ALA MET GLU LEU ILE GLU SEQRES 34 A 511 GLU VAL GLU LYS THR ARG ARG GLY LEU TYR GLY GLY VAL SEQRES 35 A 511 VAL GLY TYR LEU ASP PHE ALA GLY ASN ALA ASP PHE ALA SEQRES 36 A 511 ILE ALA ILE ARG THR ALA LEU MET ARG ASN GLY THR ALA SEQRES 37 A 511 TYR VAL GLN ALA GLY GLY GLY VAL VAL ALA ASP SER ASN SEQRES 38 A 511 GLY SER TYR GLU TYR ASN GLU ALA ARG ASN LYS ALA ARG SEQRES 39 A 511 ALA VAL LEU ASN ALA ILE ALA ALA ALA GLU THR LEU ALA SEQRES 40 A 511 ALA PRO GLY ALA HET SO4 A 601 5 HET SO4 A 602 5 HET GOL A 603 6 HET 0GA A 604 17 HET GOL A 605 6 HET IND A 606 9 HET PYR A 607 6 HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETNAM 0GA 3-{[(1Z)-1-CARBOXYPROP-1-EN-1-YL]OXY}-2-HYDROXYBENZOIC HETNAM 2 0GA ACID HETNAM IND INDOLE HETNAM PYR PYRUVIC ACID HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 SO4 2(O4 S 2-) FORMUL 4 GOL 2(C3 H8 O3) FORMUL 5 0GA C11 H10 O6 FORMUL 7 IND C8 H7 N FORMUL 8 PYR C3 H4 O3 FORMUL 9 HOH *205(H2 O) HELIX 1 AA1 SER A 10 HIS A 21 1 12 HELIX 2 AA2 THR A 36 ALA A 45 1 10 HELIX 3 AA3 ALA A 57 ARG A 61 5 5 HELIX 4 AA4 ASP A 99 LEU A 111 1 13 HELIX 5 AA5 TYR A 135 LEU A 141 5 7 HELIX 6 AA6 ARG A 190 GLN A 211 1 22 HELIX 7 AA7 THR A 232 ALA A 249 1 18 HELIX 8 AA8 ASP A 268 ASN A 280 1 13 HELIX 9 AA9 ASP A 332 ASP A 345 1 14 HELIX 10 AB1 ASP A 345 ARG A 365 1 21 HELIX 11 AB2 THR A 402 PHE A 411 1 10 HELIX 12 AB3 ALA A 413 LEU A 416 5 4 HELIX 13 AB4 PRO A 420 GLU A 432 1 13 HELIX 14 AB5 ASN A 481 GLU A 504 1 24 SHEET 1 AA111 VAL A 23 LEU A 31 0 SHEET 2 AA111 THR A 174 VAL A 182 -1 O ALA A 181 N VAL A 24 SHEET 3 AA111 ASP A 164 ASP A 169 -1 N VAL A 165 O ILE A 178 SHEET 4 AA111 TRP A 66 ALA A 71 -1 N SER A 67 O VAL A 168 SHEET 5 AA111 THR A 51 GLU A 55 -1 N PHE A 52 O GLY A 70 SHEET 6 AA111 TYR A 284 PRO A 291 -1 O MET A 285 N GLU A 55 SHEET 7 AA111 VAL A 297 SER A 305 -1 O PHE A 299 N VAL A 290 SHEET 8 AA111 THR A 460 ARG A 464 -1 O MET A 463 N SER A 300 SHEET 9 AA111 THR A 467 GLY A 473 -1 O THR A 467 N ARG A 464 SHEET 10 AA111 SER A 258 ASP A 264 -1 N MET A 263 O ALA A 468 SHEET 11 AA111 ARG A 228 ALA A 229 -1 N ARG A 228 O GLU A 262 SHEET 1 AA210 GLN A 83 LEU A 87 0 SHEET 2 AA210 ALA A 76 ARG A 80 -1 N THR A 78 O VAL A 85 SHEET 3 AA210 MET A 157 ALA A 162 -1 O LEU A 159 N LEU A 77 SHEET 4 AA210 GLY A 128 PHE A 133 -1 N VAL A 130 O LEU A 160 SHEET 5 AA210 VAL A 442 ASP A 447 -1 O LEU A 446 N MET A 129 SHEET 6 AA210 ALA A 452 ILE A 456 -1 O ALA A 455 N VAL A 443 SHEET 7 AA210 ALA A 308 HIS A 313 -1 N LEU A 309 O PHE A 454 SHEET 8 AA210 TRP A 316 THR A 319 -1 O THR A 318 N THR A 311 SHEET 9 AA210 VAL A 386 LYS A 396 -1 O VAL A 393 N THR A 319 SHEET 10 AA210 ILE A 322 TRP A 327 -1 N ARG A 326 O MET A 387 SHEET 1 AA310 GLN A 83 LEU A 87 0 SHEET 2 AA310 ALA A 76 ARG A 80 -1 N THR A 78 O VAL A 85 SHEET 3 AA310 MET A 157 ALA A 162 -1 O LEU A 159 N LEU A 77 SHEET 4 AA310 GLY A 128 PHE A 133 -1 N VAL A 130 O LEU A 160 SHEET 5 AA310 VAL A 442 ASP A 447 -1 O LEU A 446 N MET A 129 SHEET 6 AA310 ALA A 452 ILE A 456 -1 O ALA A 455 N VAL A 443 SHEET 7 AA310 ALA A 308 HIS A 313 -1 N LEU A 309 O PHE A 454 SHEET 8 AA310 TRP A 316 THR A 319 -1 O THR A 318 N THR A 311 SHEET 9 AA310 VAL A 386 LYS A 396 -1 O VAL A 393 N THR A 319 SHEET 10 AA310 ARG A 373 ARG A 382 -1 N HIS A 379 O VAL A 390 SHEET 1 AA4 2 GLN A 254 VAL A 255 0 SHEET 2 AA4 2 GLY A 418 ALA A 419 -1 O ALA A 419 N GLN A 254 CISPEP 1 ARG A 330 THR A 331 0 -3.81 CISPEP 2 PHE A 411 PRO A 412 0 -8.79 CISPEP 3 ALA A 419 PRO A 420 0 -7.43 SITE 1 AC1 5 TYR A 383 SER A 384 HIS A 385 VAL A 386 SITE 2 AC1 5 ARG A 459 SITE 1 AC2 4 ARG A 147 ARG A 231 LYS A 433 HOH A 754 SITE 1 AC3 10 LYS A 92 ASP A 93 PRO A 95 THR A 96 SITE 2 AC3 10 ARG A 365 CYS A 367 PRO A 369 ARG A 401 SITE 3 AC3 10 HOH A 717 HOH A 723 SITE 1 AC4 7 THR A 415 TYR A 439 ALA A 472 GLY A 473 SITE 2 AC4 7 LYS A 492 HOH A 775 HOH A 815 SITE 1 AC5 8 LEU A 152 ARG A 436 LEU A 438 TYR A 439 SITE 2 AC5 8 THR A 460 TYR A 469 VAL A 470 GLN A 471 SITE 1 AC6 8 GLU A 55 TYR A 284 MET A 285 VAL A 443 SITE 2 AC6 8 ASP A 453 HOH A 765 HOH A 833 HOH A 889 SITE 1 AC7 2 ARG A 42 PRO A 214 CRYST1 156.406 156.406 128.384 90.00 90.00 120.00 P 64 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006394 0.003691 0.000000 0.00000 SCALE2 0.000000 0.007383 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007789 0.00000