HEADER TRANSPORT PROTEIN 28-APR-14 4PF6 TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 ROSEOBACTER DENITRIFICANS (RD1_0742, TARGET EFI-510239) WITH BOUND 3- TITLE 3 DEOXY-D-MANNO-OCT-2-ULOSONIC ACID (KDO) COMPND MOL_ID: 1; COMPND 2 MOLECULE: C4-DICARBOXYLATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 25-331; COMPND 5 SYNONYM: TRAP PERIPLASMIC SOLUTE BINDING PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSEOBACTER DENITRIFICANS; SOURCE 3 ORGANISM_COMMON: ERYTHROBACTER SP. (STRAIN OCH 114); SOURCE 4 ORGANISM_TAXID: 375451; SOURCE 5 STRAIN: ATCC 33942 / OCH 114; SOURCE 6 GENE: RD1_0742; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 7 27-DEC-23 4PF6 1 HETSYN REVDAT 6 29-JUL-20 4PF6 1 COMPND REMARK HETNAM SITE REVDAT 5 25-DEC-19 4PF6 1 REMARK REVDAT 4 13-SEP-17 4PF6 1 REMARK REVDAT 3 07-OCT-15 4PF6 1 REMARK REVDAT 2 25-FEB-15 4PF6 1 JRNL REVDAT 1 14-MAY-14 4PF6 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.93 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 48520 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.139 REMARK 3 FREE R VALUE : 0.162 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2453 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.9496 - 5.4354 0.99 2841 171 0.1705 0.1792 REMARK 3 2 5.4354 - 4.3151 1.00 2854 168 0.1276 0.1330 REMARK 3 3 4.3151 - 3.7699 1.00 2858 163 0.1239 0.1413 REMARK 3 4 3.7699 - 3.4253 1.00 2873 157 0.1325 0.1692 REMARK 3 5 3.4253 - 3.1799 1.00 2895 130 0.1452 0.1597 REMARK 3 6 3.1799 - 2.9924 1.00 2859 164 0.1564 0.1758 REMARK 3 7 2.9924 - 2.8426 1.00 2880 141 0.1441 0.1759 REMARK 3 8 2.8426 - 2.7188 1.00 2874 144 0.1408 0.1693 REMARK 3 9 2.7188 - 2.6142 1.00 2887 170 0.1363 0.1570 REMARK 3 10 2.6142 - 2.5240 1.00 2846 169 0.1221 0.1445 REMARK 3 11 2.5240 - 2.4451 1.00 2882 133 0.1167 0.1460 REMARK 3 12 2.4451 - 2.3752 1.00 2890 144 0.1220 0.1419 REMARK 3 13 2.3752 - 2.3126 1.00 2827 181 0.1154 0.1454 REMARK 3 14 2.3126 - 2.2562 1.00 2871 174 0.1236 0.1665 REMARK 3 15 2.2562 - 2.2049 1.00 2875 146 0.1252 0.1687 REMARK 3 16 2.2049 - 2.1580 1.00 2899 141 0.1218 0.1492 REMARK 3 17 2.1580 - 2.1148 1.00 2885 141 0.1180 0.1493 REMARK 3 18 2.1148 - 2.0749 1.00 2829 185 0.1211 0.1420 REMARK 3 19 2.0749 - 2.0379 1.00 2861 145 0.1290 0.1389 REMARK 3 20 2.0379 - 2.0033 1.00 2856 168 0.1301 0.1378 REMARK 3 21 2.0033 - 1.9710 1.00 2922 109 0.1452 0.1904 REMARK 3 22 1.9710 - 1.9407 1.00 2849 153 0.1455 0.1727 REMARK 3 23 1.9407 - 1.9122 1.00 2904 137 0.1498 0.2108 REMARK 3 24 1.9122 - 1.8852 1.00 2878 146 0.1514 0.2094 REMARK 3 25 1.8852 - 1.8597 1.00 2851 169 0.1596 0.1958 REMARK 3 26 1.8597 - 1.8356 1.00 2860 160 0.1667 0.1852 REMARK 3 27 1.8356 - 1.8126 1.00 2869 155 0.1715 0.2188 REMARK 3 28 1.8126 - 1.7908 1.00 2873 157 0.1833 0.2271 REMARK 3 29 1.7908 - 1.7700 1.00 2919 135 0.1943 0.2212 REMARK 3 30 1.7700 - 1.7501 1.00 2857 162 0.1969 0.2078 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.120 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.52 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 2475 REMARK 3 ANGLE : 1.127 3379 REMARK 3 CHIRALITY : 0.066 381 REMARK 3 PLANARITY : 0.006 448 REMARK 3 DIHEDRAL : 14.952 888 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 54 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.5326 11.8962 -8.3402 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.1221 REMARK 3 T33: 0.1460 T12: 0.0082 REMARK 3 T13: 0.0462 T23: -0.0232 REMARK 3 L TENSOR REMARK 3 L11: 1.5105 L22: 1.0270 REMARK 3 L33: 1.4156 L12: -0.2439 REMARK 3 L13: -0.1048 L23: -0.3084 REMARK 3 S TENSOR REMARK 3 S11: 0.0053 S12: -0.1324 S13: 0.0605 REMARK 3 S21: 0.1815 S22: 0.0042 S23: 0.0848 REMARK 3 S31: -0.2009 S32: -0.1839 S33: 0.0133 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 55 THROUGH 111 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.1222 12.9539 -15.7768 REMARK 3 T TENSOR REMARK 3 T11: 0.1725 T22: 0.1259 REMARK 3 T33: 0.1789 T12: -0.0211 REMARK 3 T13: 0.0403 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 0.4561 L22: 0.6270 REMARK 3 L33: 1.0896 L12: -0.1779 REMARK 3 L13: 0.0205 L23: -0.0205 REMARK 3 S TENSOR REMARK 3 S11: 0.0148 S12: 0.0239 S13: 0.0847 REMARK 3 S21: -0.0123 S22: 0.0569 S23: -0.0979 REMARK 3 S31: -0.1694 S32: 0.0817 S33: -0.0644 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 112 THROUGH 152 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.2601 3.3636 -14.8990 REMARK 3 T TENSOR REMARK 3 T11: 0.1561 T22: 0.1495 REMARK 3 T33: 0.1595 T12: 0.0119 REMARK 3 T13: 0.0109 T23: -0.0339 REMARK 3 L TENSOR REMARK 3 L11: 0.8780 L22: 0.9021 REMARK 3 L33: 1.4366 L12: -0.4329 REMARK 3 L13: -0.2410 L23: -0.1958 REMARK 3 S TENSOR REMARK 3 S11: -0.0218 S12: -0.1011 S13: 0.0277 REMARK 3 S21: 0.1406 S22: 0.0430 S23: -0.1277 REMARK 3 S31: 0.1241 S32: 0.2451 S33: -0.0449 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 153 THROUGH 177 ) REMARK 3 ORIGIN FOR THE GROUP (A): 32.4914 2.8981 -40.8626 REMARK 3 T TENSOR REMARK 3 T11: 0.1843 T22: 0.1717 REMARK 3 T33: 0.1468 T12: -0.0038 REMARK 3 T13: 0.0003 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.0885 L22: 1.7404 REMARK 3 L33: 1.2090 L12: -0.2022 REMARK 3 L13: -0.3664 L23: 0.4278 REMARK 3 S TENSOR REMARK 3 S11: 0.0221 S12: 0.1742 S13: 0.0000 REMARK 3 S21: -0.3711 S22: -0.0601 S23: 0.1283 REMARK 3 S31: -0.1916 S32: -0.2248 S33: 0.0122 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 178 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.5177 9.3139 -34.5881 REMARK 3 T TENSOR REMARK 3 T11: 0.1957 T22: 0.1365 REMARK 3 T33: 0.1661 T12: -0.0319 REMARK 3 T13: 0.0458 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 0.9905 L22: 2.2614 REMARK 3 L33: 1.6877 L12: -0.6467 REMARK 3 L13: -0.0810 L23: 0.7518 REMARK 3 S TENSOR REMARK 3 S11: 0.0656 S12: 0.0988 S13: 0.1015 REMARK 3 S21: -0.3037 S22: 0.0401 S23: -0.2576 REMARK 3 S31: -0.3387 S32: 0.1179 S33: -0.0883 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 196 THROUGH 253 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.8209 7.9320 -24.4325 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.1266 REMARK 3 T33: 0.1613 T12: 0.0020 REMARK 3 T13: 0.0232 T23: -0.0138 REMARK 3 L TENSOR REMARK 3 L11: 0.3143 L22: 0.6658 REMARK 3 L33: 1.4872 L12: -0.0264 REMARK 3 L13: -0.2032 L23: 0.5285 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: 0.0521 S13: 0.0544 REMARK 3 S21: -0.0022 S22: -0.0253 S23: 0.0331 REMARK 3 S31: -0.1374 S32: -0.1469 S33: 0.0194 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 254 THROUGH 288 ) REMARK 3 ORIGIN FOR THE GROUP (A): 29.3029 -0.2096 -11.9367 REMARK 3 T TENSOR REMARK 3 T11: 0.1905 T22: 0.1541 REMARK 3 T33: 0.1814 T12: -0.0333 REMARK 3 T13: 0.0384 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.9782 L22: 1.4001 REMARK 3 L33: 4.4709 L12: 0.8493 REMARK 3 L13: 1.8378 L23: 1.2443 REMARK 3 S TENSOR REMARK 3 S11: 0.0811 S12: -0.0634 S13: -0.0821 REMARK 3 S21: 0.2279 S22: -0.0500 S23: 0.1140 REMARK 3 S31: 0.4362 S32: -0.4057 S33: -0.0436 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 289 THROUGH 309 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.5279 -4.8805 -36.1618 REMARK 3 T TENSOR REMARK 3 T11: 0.1661 T22: 0.1766 REMARK 3 T33: 0.1696 T12: -0.0615 REMARK 3 T13: 0.0318 T23: -0.0449 REMARK 3 L TENSOR REMARK 3 L11: 2.6037 L22: 0.8129 REMARK 3 L33: 0.8540 L12: 0.1678 REMARK 3 L13: -0.1179 L23: -0.1010 REMARK 3 S TENSOR REMARK 3 S11: 0.0804 S12: -0.0705 S13: -0.0619 REMARK 3 S21: -0.0054 S22: -0.0602 S23: 0.0588 REMARK 3 S31: 0.2722 S32: -0.1292 S33: -0.0124 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 310 THROUGH 330 ) REMARK 3 ORIGIN FOR THE GROUP (A): 54.1228 -0.9218 -23.4362 REMARK 3 T TENSOR REMARK 3 T11: 0.1918 T22: 0.2751 REMARK 3 T33: 0.2854 T12: 0.0522 REMARK 3 T13: 0.0436 T23: -0.0771 REMARK 3 L TENSOR REMARK 3 L11: 1.6576 L22: 2.1797 REMARK 3 L33: 2.7360 L12: 0.9760 REMARK 3 L13: -0.5917 L23: -0.7300 REMARK 3 S TENSOR REMARK 3 S11: -0.1088 S12: -0.0363 S13: -0.0805 REMARK 3 S21: 0.1180 S22: 0.1194 S23: -0.4448 REMARK 3 S31: 0.0627 S32: 0.4356 S33: -0.0058 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PF6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52900 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 159.210 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.30 REMARK 200 R MERGE (I) : 0.10400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 25.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 18.90 REMARK 200 R MERGE FOR SHELL (I) : 0.01078 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (31.6 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT); RESERVOIR (0.2 M SODIUM CHLORIDE, 0.1 M SODIUM REMARK 280 CACODYLATE PH 6.5, 2 M AMMONIUM SULFATE ); CRYOPROTECTION (80% REMARK 280 LISO4 (2 M) + 20% RESERVOIR, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.07100 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 106.14200 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.60650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 132.67750 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.53550 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.07100 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 106.14200 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 132.67750 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 79.60650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 26.53550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -9.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 613 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 SER A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 VAL A 12 REMARK 465 ASP A 13 REMARK 465 LEU A 14 REMARK 465 GLY A 15 REMARK 465 THR A 16 REMARK 465 GLU A 17 REMARK 465 ASN A 18 REMARK 465 LEU A 19 REMARK 465 TYR A 20 REMARK 465 PHE A 21 REMARK 465 GLN A 22 REMARK 465 SER A 23 REMARK 465 MSE A 24 REMARK 465 GLN A 25 REMARK 465 ASN A 331 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 547 O HOH A 565 1.97 REMARK 500 O HOH A 818 O HOH A 825 2.08 REMARK 500 O HOH A 586 O HOH A 606 2.09 REMARK 500 O HOH A 564 O HOH A 824 2.16 REMARK 500 OE2 GLU A 292 O HOH A 683 2.16 REMARK 500 O HOH A 773 O HOH A 807 2.17 REMARK 500 OE1 GLU A 198 O HOH A 668 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 606 O HOH A 609 11654 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 72 1.37 81.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510239 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4PF8 RELATED DB: PDB DBREF 4PF6 A 25 331 UNP Q16C67 Q16C67_ROSDO 25 331 SEQADV 4PF6 MSE A 2 UNP Q16C67 INITIATING METHIONINE SEQADV 4PF6 HIS A 3 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 HIS A 4 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 HIS A 5 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 HIS A 6 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 HIS A 7 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 HIS A 8 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 SER A 9 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 SER A 10 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 GLY A 11 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 VAL A 12 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 ASP A 13 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 LEU A 14 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 GLY A 15 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 THR A 16 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 GLU A 17 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 ASN A 18 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 LEU A 19 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 TYR A 20 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 PHE A 21 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 GLN A 22 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 SER A 23 UNP Q16C67 EXPRESSION TAG SEQADV 4PF6 MSE A 24 UNP Q16C67 EXPRESSION TAG SEQRES 1 A 330 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 330 GLY THR GLU ASN LEU TYR PHE GLN SER MSE GLN ASP LYS SEQRES 3 A 330 ILE THR LEU ARG MSE SER THR PRO ALA SER GLU THR ASP SEQRES 4 A 330 GLN ARG SER VAL ALA LEU ALA GLU VAL PHE ALA PRO ALA SEQRES 5 A 330 VAL ALA GLY PHE ALA THR TYR GLN PRO HIS TYR ASN ALA SEQRES 6 A 330 SER LEU ILE ALA GLN ASN SER GLU LEU GLU ALA ILE ALA SEQRES 7 A 330 SER GLY ASP LEU GLU MSE SER ILE ALA SER ALA GLN GLU SEQRES 8 A 330 LEU ALA GLN PHE PHE PRO GLU PHE SER ILE PHE ALA THR SEQRES 9 A 330 GLY TYR VAL HIS GLN SER ALA GLU HIS GLN VAL ALA VAL SEQRES 10 A 330 PHE ASN ASP PRO LEU MSE ASP PRO PHE LYS LYS THR VAL SEQRES 11 A 330 GLU ASP GLU LEU GLY ILE LYS LEU LEU SER VAL MSE TYR SEQRES 12 A 330 LEU GLY GLN ARG HIS VAL ASN LEU ARG GLN THR LYS GLU SEQRES 13 A 330 GLU LEU THR VAL THR THR PRO ALA ASP LEU ALA GLY VAL SEQRES 14 A 330 ASN LEU ARG MSE PRO GLY THR ASP ALA TRP GLN PHE LEU SEQRES 15 A 330 GLY LYS ALA LEU GLY ALA ASN PRO THR PRO MSE ALA PHE SEQRES 16 A 330 THR GLU ILE TYR THR ALA LEU GLN THR GLY SER VAL ASP SEQRES 17 A 330 GLY GLN ASP ASN PRO LEU PRO THR VAL VAL ASP ALA LYS SEQRES 18 A 330 PHE TYR GLU VAL THR ASN GLN VAL ALA LEU THR GLY HIS SEQRES 19 A 330 LEU VAL ASP LEU ASN TYR ILE ALA PHE SER LYS ALA VAL SEQRES 20 A 330 TRP ASP GLY LEU SER PRO GLU GLN GLN GLU ILE VAL GLN SEQRES 21 A 330 THR ALA ALA ASP ALA ALA ALA GLN SER GLY ARG GLU LYS SEQRES 22 A 330 GLN LEU ALA LYS GLU GLN GLU LEU VAL SER PHE LEU GLU SEQRES 23 A 330 GLU GLN GLY MSE GLU ILE TYR ALA PRO ASP LEU ASP ALA SEQRES 24 A 330 PHE ARG THR HIS VAL GLN GLU GLN TYR VAL GLY SER GLU SEQRES 25 A 330 PHE ALA ALA SER TRP PRO GLU GLY VAL LEU ASP LYS ILE SEQRES 26 A 330 ASN ALA LEU GLY ASN MODRES 4PF6 MSE A 32 MET MODIFIED RESIDUE MODRES 4PF6 MSE A 85 MET MODIFIED RESIDUE MODRES 4PF6 MSE A 124 MET MODIFIED RESIDUE MODRES 4PF6 MSE A 143 MET MODIFIED RESIDUE MODRES 4PF6 MSE A 174 MET MODIFIED RESIDUE MODRES 4PF6 MSE A 194 MET MODIFIED RESIDUE MODRES 4PF6 MSE A 291 MET MODIFIED RESIDUE HET MSE A 32 17 HET MSE A 85 17 HET MSE A 124 17 HET MSE A 143 17 HET MSE A 174 17 HET MSE A 194 17 HET MSE A 291 17 HET KDO A 401 29 HET PGE A 402 24 HET SO4 A 403 5 HET SO4 A 404 5 HETNAM MSE SELENOMETHIONINE HETNAM KDO 3-DEOXY-ALPHA-D-MANNO-OCT-2-ULOPYRANOSONIC ACID HETNAM PGE TRIETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETSYN KDO 3-DEOXY-D-MANNO-OCT-2-ULOPYRANOSONIC ACID; 2-KETO-3- HETSYN 2 KDO DEOXY-D-MANNOOCTANOIC ACID; 3-DEOXY-ALPHA-D-MANNO-OCT- HETSYN 3 KDO 2-ULOSONIC ACID; 3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID; HETSYN 4 KDO 3-DEOXY-MANNO-OCT-2-ULOSONIC ACID FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 KDO C8 H14 O8 FORMUL 3 PGE C6 H14 O4 FORMUL 4 SO4 2(O4 S 2-) FORMUL 6 HOH *434(H2 O) HELIX 1 AA1 ASP A 40 VAL A 49 1 10 HELIX 2 AA2 VAL A 49 ALA A 55 1 7 HELIX 3 AA3 SER A 73 SER A 80 1 8 HELIX 4 AA4 SER A 89 GLN A 95 1 7 HELIX 5 AA5 PHE A 96 THR A 105 5 10 HELIX 6 AA6 SER A 111 ASP A 121 1 11 HELIX 7 AA7 MSE A 124 GLY A 136 1 13 HELIX 8 AA8 THR A 163 ALA A 168 5 6 HELIX 9 AA9 THR A 177 LEU A 187 1 11 HELIX 10 AB1 ALA A 195 THR A 197 5 3 HELIX 11 AB2 GLU A 198 THR A 205 1 8 HELIX 12 AB3 PRO A 214 ALA A 221 1 8 HELIX 13 AB4 LYS A 222 VAL A 226 5 5 HELIX 14 AB5 LYS A 246 LEU A 252 1 7 HELIX 15 AB6 SER A 253 GLN A 289 1 37 HELIX 16 AB7 ASP A 297 VAL A 310 1 14 HELIX 17 AB8 SER A 312 TRP A 318 1 7 HELIX 18 AB9 GLY A 321 LEU A 329 1 9 SHEET 1 AA1 6 ALA A 58 HIS A 63 0 SHEET 2 AA1 6 ILE A 28 SER A 33 1 N LEU A 30 O THR A 59 SHEET 3 AA1 6 MSE A 85 ALA A 88 1 O MSE A 85 N ARG A 31 SHEET 4 AA1 6 GLN A 229 SER A 245 -1 O ALA A 243 N SER A 86 SHEET 5 AA1 6 ILE A 137 LEU A 152 -1 N LYS A 138 O PHE A 244 SHEET 6 AA1 6 GLY A 210 GLN A 211 -1 O GLN A 211 N ASN A 151 SHEET 1 AA2 5 ALA A 58 HIS A 63 0 SHEET 2 AA2 5 ILE A 28 SER A 33 1 N LEU A 30 O THR A 59 SHEET 3 AA2 5 MSE A 85 ALA A 88 1 O MSE A 85 N ARG A 31 SHEET 4 AA2 5 GLN A 229 SER A 245 -1 O ALA A 243 N SER A 86 SHEET 5 AA2 5 GLU A 292 TYR A 294 1 O TYR A 294 N LEU A 232 SHEET 1 AA3 2 ASN A 171 MSE A 174 0 SHEET 2 AA3 2 ASN A 190 PRO A 193 1 O THR A 192 N MSE A 174 LINK C ARG A 31 N MSE A 32 1555 1555 1.34 LINK C MSE A 32 N SER A 33 1555 1555 1.33 LINK C GLU A 84 N MSE A 85 1555 1555 1.33 LINK C MSE A 85 N SER A 86 1555 1555 1.33 LINK C LEU A 123 N MSE A 124 1555 1555 1.33 LINK C MSE A 124 N ASP A 125 1555 1555 1.33 LINK C VAL A 142 N MSE A 143 1555 1555 1.33 LINK C MSE A 143 N TYR A 144 1555 1555 1.32 LINK C ARG A 173 N MSE A 174 1555 1555 1.33 LINK C MSE A 174 N PRO A 175 1555 1555 1.34 LINK C PRO A 193 N MSE A 194 1555 1555 1.33 LINK C MSE A 194 N ALA A 195 1555 1555 1.33 LINK C GLY A 290 N MSE A 291 1555 1555 1.33 LINK C MSE A 291 N AGLU A 292 1555 1555 1.33 LINK C MSE A 291 N BGLU A 292 1555 1555 1.33 CRYST1 100.527 100.527 159.213 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009948 0.005743 0.000000 0.00000 SCALE2 0.000000 0.011486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006281 0.00000