HEADER TRANSPORT PROTEIN 29-APR-14 4PFI TITLE CRYSTAL STRUCTURE OF A TRAP PERIPLASMIC SOLUTE BINDING PROTEIN FROM TITLE 2 MARINOBACTER AQUAEOLEI VT8 (MAQU_2829, TARGET EFI-510133), APO OPEN TITLE 3 STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRAP DICARBOXYLATE TRANSPORTER-DCTP SUBUNIT; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRAP PERIPLASMIC SOLUTE BINDING PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MARINOBACTER AQUAEOLEI; SOURCE 3 ORGANISM_TAXID: 351348; SOURCE 4 STRAIN: ATCC 700491 / DSM 11845 / VT8; SOURCE 5 GENE: MAQU_2829; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS TRAP PERIPLASMIC SOLUTE BINDING FAMILY, ENZYME FUNCTION INITIATIVE, KEYWDS 2 EFI, STRUCTURAL GENOMICS, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN,M.STEAD, AUTHOR 2 J.D.ATTONITO,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,B.HILLERICH,J.LOVE, AUTHOR 3 R.D.SEIDEL,K.L.WHALEN,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION INITIATIVE AUTHOR 4 (EFI) REVDAT 6 27-DEC-23 4PFI 1 LINK REVDAT 5 25-DEC-19 4PFI 1 REMARK REVDAT 4 06-SEP-17 4PFI 1 REMARK REVDAT 3 26-AUG-15 4PFI 1 REMARK REVDAT 2 25-FEB-15 4PFI 1 JRNL REVDAT 1 14-MAY-14 4PFI 0 JRNL AUTH M.W.VETTING,N.AL-OBAIDI,S.ZHAO,B.SAN FRANCISCO,J.KIM, JRNL AUTH 2 D.J.WICHELECKI,J.T.BOUVIER,J.O.SOLBIATI,H.VU,X.ZHANG, JRNL AUTH 3 D.A.RODIONOV,J.D.LOVE,B.S.HILLERICH,R.D.SEIDEL,R.J.QUINN, JRNL AUTH 4 A.L.OSTERMAN,J.E.CRONAN,M.P.JACOBSON,J.A.GERLT,S.C.ALMO JRNL TITL EXPERIMENTAL STRATEGIES FOR FUNCTIONAL ANNOTATION AND JRNL TITL 2 METABOLISM DISCOVERY: TARGETED SCREENING OF SOLUTE BINDING JRNL TITL 3 PROTEINS AND UNBIASED PANNING OF METABOLOMES. JRNL REF BIOCHEMISTRY V. 54 909 2015 JRNL REFN ISSN 0006-2960 JRNL PMID 25540822 JRNL DOI 10.1021/BI501388Y REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 30828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.3380 - 5.1115 0.99 2672 119 0.2011 0.2370 REMARK 3 2 5.1115 - 4.0610 1.00 2678 129 0.1488 0.1696 REMARK 3 3 4.0610 - 3.5487 0.99 2644 153 0.1556 0.1873 REMARK 3 4 3.5487 - 3.2248 1.00 2654 155 0.1594 0.2046 REMARK 3 5 3.2248 - 2.9939 1.00 2706 137 0.1770 0.2430 REMARK 3 6 2.9939 - 2.8176 1.00 2661 148 0.1943 0.2613 REMARK 3 7 2.8176 - 2.6766 1.00 2628 159 0.2181 0.2844 REMARK 3 8 2.6766 - 2.5601 1.00 2687 150 0.2149 0.3203 REMARK 3 9 2.5601 - 2.4616 1.00 2653 144 0.2242 0.2910 REMARK 3 10 2.4616 - 2.3767 0.99 2672 139 0.2417 0.2523 REMARK 3 11 2.3767 - 2.3024 0.96 2605 135 0.2430 0.3239 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.290 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2431 REMARK 3 ANGLE : 1.139 3305 REMARK 3 CHIRALITY : 0.070 362 REMARK 3 PLANARITY : 0.005 441 REMARK 3 DIHEDRAL : 15.211 875 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 45 THROUGH 165 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.0088 41.1330 7.7014 REMARK 3 T TENSOR REMARK 3 T11: 0.4059 T22: 0.2486 REMARK 3 T33: 0.2825 T12: -0.1019 REMARK 3 T13: -0.1039 T23: 0.1130 REMARK 3 L TENSOR REMARK 3 L11: 1.8734 L22: 1.4150 REMARK 3 L33: 0.7264 L12: 0.6964 REMARK 3 L13: -0.8011 L23: -0.1600 REMARK 3 S TENSOR REMARK 3 S11: 0.1859 S12: -0.3412 S13: -0.3090 REMARK 3 S21: 0.1058 S22: -0.1298 S23: -0.0721 REMARK 3 S31: 0.4015 S32: -0.0785 S33: 0.0081 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 166 THROUGH 254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.0373 61.3656 1.4754 REMARK 3 T TENSOR REMARK 3 T11: 0.1726 T22: 0.1062 REMARK 3 T33: 0.1203 T12: 0.0284 REMARK 3 T13: -0.0103 T23: 0.0295 REMARK 3 L TENSOR REMARK 3 L11: 1.3173 L22: 2.0280 REMARK 3 L33: 1.7105 L12: -0.6304 REMARK 3 L13: 0.1851 L23: 0.8134 REMARK 3 S TENSOR REMARK 3 S11: 0.0537 S12: -0.0767 S13: -0.2131 REMARK 3 S21: -0.0056 S22: 0.0388 S23: -0.1268 REMARK 3 S31: 0.2464 S32: 0.1764 S33: -0.0620 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 255 THROUGH 349 ) REMARK 3 ORIGIN FOR THE GROUP (A): 38.6297 45.0317 -0.8801 REMARK 3 T TENSOR REMARK 3 T11: 0.4030 T22: 0.1085 REMARK 3 T33: 0.3264 T12: 0.0128 REMARK 3 T13: -0.0802 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 1.3298 L22: 1.1765 REMARK 3 L33: 0.7995 L12: 0.2954 REMARK 3 L13: 0.0809 L23: -0.1683 REMARK 3 S TENSOR REMARK 3 S11: 0.1653 S12: -0.0338 S13: -0.5679 REMARK 3 S21: -0.2138 S22: -0.0531 S23: 0.0136 REMARK 3 S31: 0.4923 S32: 0.0719 S33: 0.0728 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PFI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-APR-14. REMARK 100 THE DEPOSITION ID IS D_1000201306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17145 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 41.50 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 41.20 REMARK 200 R MERGE FOR SHELL (I) : 0.80700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (55.0 MG/ML, 10 MM HEPES PH REMARK 280 7.5, 5 MM DTT); RESERVOIR (3.5 M SODIUM FORMAT PH 7.0); REMARK 280 CRYOPROTECTION (80% 7M SODIUM FORMATE + 20% RESERVOIR), VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.67167 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 113.34333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 85.00750 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 141.67917 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.33583 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 56.67167 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 113.34333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 141.67917 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 85.00750 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 28.33583 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 516 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 532 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 536 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 618 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 HIS A 16 REMARK 465 SER A 17 REMARK 465 SER A 18 REMARK 465 GLY A 19 REMARK 465 VAL A 20 REMARK 465 ASP A 21 REMARK 465 LEU A 22 REMARK 465 GLY A 23 REMARK 465 THR A 24 REMARK 465 GLU A 25 REMARK 465 ASN A 26 REMARK 465 LEU A 27 REMARK 465 TYR A 28 REMARK 465 PHE A 29 REMARK 465 GLN A 30 REMARK 465 SER A 31 REMARK 465 MSE A 32 REMARK 465 ALA A 33 REMARK 465 GLN A 34 REMARK 465 SER A 35 REMARK 465 THR A 36 REMARK 465 ALA A 37 REMARK 465 ASN A 38 REMARK 465 GLY A 39 REMARK 465 LYS A 40 REMARK 465 PRO A 41 REMARK 465 GLU A 42 REMARK 465 TYR A 43 REMARK 465 PRO A 44 REMARK 465 GLY A 89 REMARK 465 THR A 90 REMARK 465 SER A 91 REMARK 465 ILE A 350 REMARK 465 ALA A 351 REMARK 465 GLY A 352 REMARK 465 ASN A 353 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 96 CG CD OE1 OE2 REMARK 470 ARG A 99 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 300 CG CD OE1 OE2 REMARK 470 ARG A 346 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 331 O HOH A 620 1.46 REMARK 500 HE ARG A 201 O HOH A 616 1.51 REMARK 500 OH TYR A 153 HG SER A 257 1.59 REMARK 500 O HOH A 612 O HOH A 624 1.91 REMARK 500 O HOH A 633 O HOH A 636 2.04 REMARK 500 O HOH A 518 O HOH A 522 2.08 REMARK 500 NH2 ARG A 331 O HOH A 620 2.10 REMARK 500 O SER A 349 O HOH A 615 2.11 REMARK 500 O ASN A 174 O HOH A 501 2.13 REMARK 500 OE1 GLU A 297 O HOH A 634 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 513 O HOH A 521 6655 1.94 REMARK 500 O HOH A 511 O HOH A 537 8565 2.08 REMARK 500 O HOH A 525 O HOH A 528 6655 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 128 -66.36 -102.49 REMARK 500 LEU A 177 73.46 -117.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 618 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 401 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 241 O REMARK 620 2 GLN A 243 O 58.0 REMARK 620 3 ASN A 244 OD1 90.3 33.7 REMARK 620 4 GLY A 307 O 72.0 30.4 26.6 REMARK 620 5 HOH A 508 O 47.6 35.0 51.6 26.7 REMARK 620 6 HOH A 536 O 79.3 23.3 11.0 20.2 42.3 REMARK 620 7 HOH A 536 O 79.3 23.4 11.0 20.2 42.3 0.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-510133 RELATED DB: TARGETTRACK DBREF 4PFI A 33 353 UNP A1U4I5 A1U4I5_MARAV 33 353 SEQADV 4PFI MSE A 10 UNP A1U4I5 INITIATING METHIONINE SEQADV 4PFI HIS A 11 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI HIS A 12 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI HIS A 13 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI HIS A 14 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI HIS A 15 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI HIS A 16 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI SER A 17 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI SER A 18 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI GLY A 19 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI VAL A 20 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI ASP A 21 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI LEU A 22 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI GLY A 23 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI THR A 24 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI GLU A 25 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI ASN A 26 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI LEU A 27 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI TYR A 28 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI PHE A 29 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI GLN A 30 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI SER A 31 UNP A1U4I5 EXPRESSION TAG SEQADV 4PFI MSE A 32 UNP A1U4I5 EXPRESSION TAG SEQRES 1 A 344 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 344 GLY THR GLU ASN LEU TYR PHE GLN SER MSE ALA GLN SER SEQRES 3 A 344 THR ALA ASN GLY LYS PRO GLU TYR PRO VAL THR TRP ARG SEQRES 4 A 344 PHE ALA LEU GLU GLU ILE GLU GLY SER VAL GLN HIS LEU SEQRES 5 A 344 TYR ALA GLN GLN PHE ARG GLU GLN VAL GLU ALA LEU SER SEQRES 6 A 344 GLY GLY ARG ILE GLU VAL ASP VAL PHE PRO TYR GLY SER SEQRES 7 A 344 LEU GLY THR SER ALA GLN LEU THR GLU LEU THR ARG ASN SEQRES 8 A 344 GLY SER VAL ASN LEU ALA PHE ALA SER PRO GLY HIS LEU SEQRES 9 A 344 ALA ASP THR VAL PRO GLU THR GLY LEU PHE ASN LEU HIS SEQRES 10 A 344 PHE LEU LEU PRO GLU GLU GLN GLU PRO ALA ARG ARG LEU SEQRES 11 A 344 LEU GLU ALA PRO ALA PHE ILE SER ALA PHE GLU PRO ALA SEQRES 12 A 344 TYR HIS ASN ALA GLY LEU GLN LEU LEU GLY PHE VAL PRO SEQRES 13 A 344 GLU GLY TRP MSE THR TRP THR ALA ASN ASN PRO LEU ARG SEQRES 14 A 344 THR PRO SER ASP PHE GLN GLY LEU ARG PHE ARG THR MSE SEQRES 15 A 344 THR SER GLU THR ALA ALA GLU ALA PHE ARG SER TYR GLY SEQRES 16 A 344 ALA ASP PRO VAL GLN THR PRO PHE ALA GLN VAL TYR SER SEQRES 17 A 344 ASP LEU GLN LEU GLY ASN ILE ASP GLY GLN SER ASN PRO SEQRES 18 A 344 VAL PHE ALA ILE GLU GLU MSE GLY PHE HIS GLU VAL GLN SEQRES 19 A 344 ASN VAL LEU THR MSE ALA ARG ALA SER ARG PHE ILE ALA SEQRES 20 A 344 SER VAL VAL ALA ASN GLU ASP TRP PHE ALA GLY LEU PRO SEQRES 21 A 344 SER GLN GLU ARG LYS TRP LEU GLU GLU THR ILE ALA GLN SEQRES 22 A 344 LEU SER GLU GLU ALA TRP THR LEU GLN GLU ASP LEU ASN SEQRES 23 A 344 LYS GLU ARG LEU GLU THR ILE LEU GLU GLN GLY GLY ILE SEQRES 24 A 344 ARG VAL VAL ARG LEU THR GLU ASP GLU ARG ALA ALA PHE SEQRES 25 A 344 ARG ASP ALA SER LEU PRO ALA ARG GLN ARG PHE ILE GLU SEQRES 26 A 344 LEU THR GLY GLU LYS GLY GLN ALA LEU ILE GLN ARG ALA SEQRES 27 A 344 THR SER ILE ALA GLY ASN MODRES 4PFI MSE A 169 MET MODIFIED RESIDUE MODRES 4PFI MSE A 191 MET MODIFIED RESIDUE MODRES 4PFI MSE A 237 MET MODIFIED RESIDUE MODRES 4PFI MSE A 248 MET MODIFIED RESIDUE HET MSE A 169 17 HET MSE A 191 17 HET MSE A 237 17 HET MSE A 248 17 HET NA A 401 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 2 NA NA 1+ FORMUL 3 HOH *144(H2 O) HELIX 1 AA1 SER A 57 GLY A 75 1 19 HELIX 2 AA2 GLN A 93 ASN A 100 1 8 HELIX 3 AA3 SER A 109 ALA A 114 1 6 HELIX 4 AA4 VAL A 117 LEU A 125 5 9 HELIX 5 AA5 GLU A 132 ALA A 142 1 11 HELIX 6 AA6 ALA A 142 ASN A 155 1 14 HELIX 7 AA7 THR A 179 GLN A 184 5 6 HELIX 8 AA8 SER A 193 SER A 202 1 10 HELIX 9 AA9 PRO A 211 LEU A 221 1 11 HELIX 10 AB1 PRO A 230 GLY A 238 1 9 HELIX 11 AB2 PHE A 239 GLN A 243 5 5 HELIX 12 AB3 GLU A 262 GLY A 267 1 6 HELIX 13 AB4 GLN A 271 GLY A 306 1 36 HELIX 14 AB5 THR A 314 LEU A 326 1 13 HELIX 15 AB6 LEU A 326 SER A 349 1 24 SHEET 1 AA1 5 GLU A 79 PHE A 83 0 SHEET 2 AA1 5 THR A 46 ALA A 50 1 N PHE A 49 O PHE A 83 SHEET 3 AA1 5 LEU A 105 ALA A 108 1 O LEU A 105 N ALA A 50 SHEET 4 AA1 5 ARG A 253 ASN A 261 -1 O SER A 257 N ALA A 108 SHEET 5 AA1 5 LEU A 158 TRP A 168 -1 N GLN A 159 O ALA A 260 SHEET 1 AA2 6 ASP A 206 VAL A 208 0 SHEET 2 AA2 6 ARG A 187 ARG A 189 1 N PHE A 188 O VAL A 208 SHEET 3 AA2 6 GLY A 226 ASN A 229 1 O GLY A 226 N ARG A 189 SHEET 4 AA2 6 THR A 170 ALA A 173 -1 N THR A 172 O GLN A 227 SHEET 5 AA2 6 VAL A 245 MSE A 248 -1 O THR A 247 N TRP A 171 SHEET 6 AA2 6 ARG A 309 ARG A 312 1 O ARG A 309 N LEU A 246 LINK C TRP A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N THR A 170 1555 1555 1.33 LINK C THR A 190 N MSE A 191 1555 1555 1.34 LINK C MSE A 191 N THR A 192 1555 1555 1.32 LINK C GLU A 236 N MSE A 237 1555 1555 1.34 LINK C MSE A 237 N GLY A 238 1555 1555 1.32 LINK C THR A 247 N MSE A 248 1555 1555 1.32 LINK C MSE A 248 N ALA A 249 1555 1555 1.33 LINK O GLU A 241 NA NA A 401 1555 8675 2.61 LINK O GLN A 243 NA NA A 401 1555 1555 2.44 LINK OD1 ASN A 244 NA NA A 401 1555 1555 2.33 LINK O GLY A 307 NA NA A 401 1555 1555 2.42 LINK NA NA A 401 O HOH A 508 1555 1555 2.50 LINK NA NA A 401 O HOH A 536 1555 1555 2.57 LINK NA NA A 401 O HOH A 536 1555 8675 2.57 SITE 1 AC1 6 GLU A 241 GLN A 243 ASN A 244 GLY A 307 SITE 2 AC1 6 HOH A 508 HOH A 536 CRYST1 85.841 85.841 170.015 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011649 0.006726 0.000000 0.00000 SCALE2 0.000000 0.013452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005882 0.00000