HEADER ISOMERASE 01-MAY-14 4PFZ TITLE X-RAY CRYSTAL STRUCTURE OF 5-CARBOXYMETHYL-2-HYDROXYMUCONATE DELTA- TITLE 2 ISOMERASE FROM MYCOBACTERIUM SMEGMATIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5-CARBOXYMETHYL-2-HYDROXYMUCONATE DELTA-ISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PUTATIVE 2-HYDROXYHEPTA-2,4-DIENE-1,7-DIOATE ISOMERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: ATCC 700084 / MC(2)155; SOURCE 5 GENE: MSMEG_2382, MSMEI_2322; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.S.HORANYI,J.ABENDROTH,D.LORIMER,T.EDWARDS,SEATTLE STRUCTURAL AUTHOR 2 GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 27-SEP-23 4PFZ 1 SOURCE REMARK LINK REVDAT 1 19-NOV-14 4PFZ 0 JRNL AUTH P.S.HORANYI,J.ABENDROTH,D.LORIMER,T.EDWARDS JRNL TITL X-RAY CRYSTAL STRUCTURE OF 5-CARBOXYMETHYL-2-HYDROXYMUCONATE JRNL TITL 2 DELTA-ISOMERASE FROM MYCOBACTERIUM SMEGMATIS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 46762 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.470 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.45 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.88 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: NULL REMARK 3 ORIGIN FOR THE GROUP (A): 11.7025 -4.8384 15.3459 REMARK 3 T TENSOR REMARK 3 T11: 0.1358 T22: 0.1176 REMARK 3 T33: 0.1123 T12: -0.0237 REMARK 3 T13: -0.0264 T23: 0.0091 REMARK 3 L TENSOR REMARK 3 L11: 2.2885 L22: 1.7626 REMARK 3 L33: 1.3151 L12: -0.7835 REMARK 3 L13: -0.6914 L23: 0.4247 REMARK 3 S TENSOR REMARK 3 S11: 0.0218 S12: -0.1130 S13: -0.1161 REMARK 3 S21: 0.0186 S22: -0.0171 S23: -0.1042 REMARK 3 S31: 0.0573 S32: 0.0691 S33: -0.0042 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201329. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44763 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 3RR6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 100MM SPG PH 6.0 SPG: REMARK 280 SUCCINIC ACID, NAH2PO4 H20, GLYCINE, PH ADJUSTED WITH 10M NAOH, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 68.50000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 26.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 68.50000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 26.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2670 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 424 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 92 REMARK 465 GLU A 93 REMARK 465 GLU A 94 REMARK 465 MET A 95 REMARK 465 GLY A 96 REMARK 465 GLY A 97 REMARK 465 GLY A 278 REMARK 465 LYS A 279 REMARK 465 LYS A 280 REMARK 465 ALA B 51 REMARK 465 GLU B 52 REMARK 465 HIS B 53 REMARK 465 PRO B 54 REMARK 465 PHE B 55 REMARK 465 GLY B 56 REMARK 465 ASN B 57 REMARK 465 LYS B 280 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 86 CG CD CE NZ REMARK 470 HIS A 91 CG ND1 CD2 CE1 NE2 REMARK 470 VAL A 98 CG1 CG2 REMARK 470 ASP B 31 CG OD1 OD2 REMARK 470 ASP B 41 CG OD1 OD2 REMARK 470 ASP B 44 CG OD1 OD2 REMARK 470 LYS B 48 CG CD CE NZ REMARK 470 ILE B 50 CG1 CG2 CD1 REMARK 470 ASN B 59 CG OD1 ND2 REMARK 470 ARG B 63 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 69 CG OD1 OD2 REMARK 470 LYS B 86 CG CD CE NZ REMARK 470 HIS B 91 CG ND1 CD2 CE1 NE2 REMARK 470 GLU B 94 CG CD OE1 OE2 REMARK 470 MET B 95 CG SD CE REMARK 470 VAL B 98 CG1 CG2 REMARK 470 GLU B 101 CG CD OE1 OE2 REMARK 470 GLU B 249 CG CD OE1 OE2 REMARK 470 LYS B 277 CG CD CE NZ REMARK 470 LYS B 279 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU A 39 O HOH A 575 2.16 REMARK 500 O HOH A 533 O HOH B 427 2.16 REMARK 500 NH2 ARG B 212 O HOH B 413 2.17 REMARK 500 O PHE A 55 O HOH A 577 2.17 REMARK 500 O HOH A 413 O HOH A 442 2.18 REMARK 500 O HOH A 546 O HOH A 556 2.18 REMARK 500 O HOH A 591 O HOH B 427 2.18 REMARK 500 O HOH A 567 O HOH A 592 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 408 O HOH A 564 2556 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 52 -53.02 69.69 REMARK 500 ASN A 87 20.24 -154.75 REMARK 500 ASN A 117 -3.26 71.72 REMARK 500 ASP A 200 68.04 -154.11 REMARK 500 ARG A 214 118.60 -161.27 REMARK 500 ASN B 87 15.50 -148.39 REMARK 500 ASP B 200 66.10 -154.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 564 DISTANCE = 5.84 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 84 O REMARK 620 2 GLU A 132 OE1 147.1 REMARK 620 3 GLU A 134 OE2 115.2 88.6 REMARK 620 4 ASP A 163 OD2 120.0 71.6 103.3 REMARK 620 5 HOH A 554 O 90.2 57.0 125.0 103.8 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 302 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 152 O REMARK 620 2 ILE A 155 O 84.3 REMARK 620 3 HOH A 421 O 110.2 120.8 REMARK 620 4 HOH A 490 O 145.7 64.5 98.4 REMARK 620 5 HOH A 592 O 61.8 50.4 166.7 86.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-MYSMA.00471.C RELATED DB: TARGETTRACK DBREF 4PFZ A 22 280 UNP A0QUY6 A0QUY6_MYCS2 1 259 DBREF 4PFZ B 22 280 UNP A0QUY6 A0QUY6_MYCS2 1 259 SEQRES 1 A 259 MET ARG LEU GLY ARG ILE ALA SER PRO ASP GLY VAL ALA SEQRES 2 A 259 PHE VAL SER ILE GLU GLY ASP GLY PRO ASP ALA VAL CYS SEQRES 3 A 259 LYS GLU ILE ALA GLU HIS PRO PHE GLY ASN PRO ASN PHE SEQRES 4 A 259 THR GLY ARG SER TRP PRO LEU ALA ASP VAL ARG LEU LEU SEQRES 5 A 259 ALA PRO ILE LEU ALA SER LYS VAL ILE ALA VAL GLY LYS SEQRES 6 A 259 ASN TYR ALA ALA HIS ALA GLU GLU MET GLY GLY VAL ALA SEQRES 7 A 259 PRO GLU ASP PRO VAL ILE PHE LEU LYS PRO ASN THR ALA SEQRES 8 A 259 ILE ILE GLY PRO ASN VAL PRO ILE GLN LEU PRO ALA ASP SEQRES 9 A 259 ALA ASP PRO VAL HIS HIS GLU GLY GLU LEU ALA ILE VAL SEQRES 10 A 259 ILE GLY ARG PRO CYS LYS ASP VAL PRO ALA ALA ARG ALA SEQRES 11 A 259 ALA GLU PHE ILE LEU GLY TYR THR ILE GLY ASN ASP VAL SEQRES 12 A 259 SER ALA ARG ASP GLN GLN ARG LYS ASP GLY GLN TRP MET SEQRES 13 A 259 ARG ALA LYS GLY HIS ASP THR PHE CYS PRO LEU GLY PRO SEQRES 14 A 259 TRP ILE VAL THR ASP LEU ASP PRO SER ASP VAL GLU LEU SEQRES 15 A 259 ARG THR GLU VAL ASN GLY GLN VAL ARG GLN ARG SER ARG SEQRES 16 A 259 THR SER LEU LEU LEU HIS ASP ILE GLY ARG LEU VAL GLU SEQRES 17 A 259 TRP THR SER ALA VAL MET THR LEU LEU PRO GLY ASP VAL SEQRES 18 A 259 ILE LEU THR GLY THR PRO GLU GLY VAL GLY PRO ILE GLU SEQRES 19 A 259 ASP GLY ASP THR VAL SER ILE THR VAL GLU GLY ILE GLY SEQRES 20 A 259 THR LEU THR ASN PRO VAL VAL ARG LYS GLY LYS LYS SEQRES 1 B 259 MET ARG LEU GLY ARG ILE ALA SER PRO ASP GLY VAL ALA SEQRES 2 B 259 PHE VAL SER ILE GLU GLY ASP GLY PRO ASP ALA VAL CYS SEQRES 3 B 259 LYS GLU ILE ALA GLU HIS PRO PHE GLY ASN PRO ASN PHE SEQRES 4 B 259 THR GLY ARG SER TRP PRO LEU ALA ASP VAL ARG LEU LEU SEQRES 5 B 259 ALA PRO ILE LEU ALA SER LYS VAL ILE ALA VAL GLY LYS SEQRES 6 B 259 ASN TYR ALA ALA HIS ALA GLU GLU MET GLY GLY VAL ALA SEQRES 7 B 259 PRO GLU ASP PRO VAL ILE PHE LEU LYS PRO ASN THR ALA SEQRES 8 B 259 ILE ILE GLY PRO ASN VAL PRO ILE GLN LEU PRO ALA ASP SEQRES 9 B 259 ALA ASP PRO VAL HIS HIS GLU GLY GLU LEU ALA ILE VAL SEQRES 10 B 259 ILE GLY ARG PRO CYS LYS ASP VAL PRO ALA ALA ARG ALA SEQRES 11 B 259 ALA GLU PHE ILE LEU GLY TYR THR ILE GLY ASN ASP VAL SEQRES 12 B 259 SER ALA ARG ASP GLN GLN ARG LYS ASP GLY GLN TRP MET SEQRES 13 B 259 ARG ALA LYS GLY HIS ASP THR PHE CYS PRO LEU GLY PRO SEQRES 14 B 259 TRP ILE VAL THR ASP LEU ASP PRO SER ASP VAL GLU LEU SEQRES 15 B 259 ARG THR GLU VAL ASN GLY GLN VAL ARG GLN ARG SER ARG SEQRES 16 B 259 THR SER LEU LEU LEU HIS ASP ILE GLY ARG LEU VAL GLU SEQRES 17 B 259 TRP THR SER ALA VAL MET THR LEU LEU PRO GLY ASP VAL SEQRES 18 B 259 ILE LEU THR GLY THR PRO GLU GLY VAL GLY PRO ILE GLU SEQRES 19 B 259 ASP GLY ASP THR VAL SER ILE THR VAL GLU GLY ILE GLY SEQRES 20 B 259 THR LEU THR ASN PRO VAL VAL ARG LYS GLY LYS LYS HET NA A 301 1 HET NA A 302 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *331(H2 O) HELIX 1 AA1 ALA A 68 VAL A 70 5 3 HELIX 2 AA2 PRO A 109 THR A 111 5 3 HELIX 3 AA3 PRO A 147 GLU A 153 5 7 HELIX 4 AA4 ARG A 167 GLY A 174 1 8 HELIX 5 AA5 TRP A 176 GLY A 181 1 6 HELIX 6 AA6 ASP A 197 ASP A 200 5 4 HELIX 7 AA7 SER A 218 LEU A 220 5 3 HELIX 8 AA8 ASP A 223 MET A 235 1 13 HELIX 9 AA9 PRO B 109 THR B 111 5 3 HELIX 10 AB1 PRO B 147 GLU B 153 5 7 HELIX 11 AB2 ARG B 167 GLY B 174 1 8 HELIX 12 AB3 TRP B 176 GLY B 181 1 6 HELIX 13 AB4 ASP B 197 ASP B 200 5 4 HELIX 14 AB5 SER B 218 LEU B 220 5 3 HELIX 15 AB6 ASP B 223 MET B 235 1 13 SHEET 1 AA110 PHE A 60 PRO A 66 0 SHEET 2 AA110 VAL A 46 ILE A 50 -1 N CYS A 47 O TRP A 65 SHEET 3 AA110 GLY A 32 GLU A 39 -1 N PHE A 35 O ILE A 50 SHEET 4 AA110 ARG A 23 SER A 29 -1 N SER A 29 O GLY A 32 SHEET 5 AA110 CYS A 186 VAL A 193 -1 O ILE A 192 N LEU A 24 SHEET 6 AA110 ILE A 155 ASN A 162 -1 N TYR A 158 O VAL A 193 SHEET 7 AA110 GLY A 133 ILE A 139 -1 N ALA A 136 O THR A 159 SHEET 8 AA110 VAL A 242 LEU A 244 -1 O ILE A 243 N ILE A 137 SHEET 9 AA110 VAL A 81 VAL A 84 1 N ILE A 82 O LEU A 244 SHEET 10 AA110 ILE A 105 LYS A 108 -1 O LYS A 108 N VAL A 81 SHEET 1 AA2 4 ARG A 71 LEU A 72 0 SHEET 2 AA2 4 ARG A 23 SER A 29 -1 N ALA A 28 O ARG A 71 SHEET 3 AA2 4 CYS A 186 VAL A 193 -1 O ILE A 192 N LEU A 24 SHEET 4 AA2 4 ILE A 113 ILE A 114 1 N ILE A 114 O LEU A 188 SHEET 1 AA3 5 ILE A 120 LEU A 122 0 SHEET 2 AA3 5 GLY A 268 ARG A 276 1 O VAL A 275 N LEU A 122 SHEET 3 AA3 5 THR A 259 VAL A 264 -1 N ILE A 262 O LEU A 270 SHEET 4 AA3 5 GLU A 202 VAL A 207 -1 N GLU A 206 O SER A 261 SHEET 5 AA3 5 GLN A 210 ARG A 216 -1 O ARG A 212 N THR A 205 SHEET 1 AA4 3 SER A 165 ALA A 166 0 SHEET 2 AA4 3 VAL A 129 HIS A 131 -1 N HIS A 130 O SER A 165 SHEET 3 AA4 3 GLY A 252 ILE A 254 -1 O ILE A 254 N VAL A 129 SHEET 1 AA510 SER B 64 PRO B 66 0 SHEET 2 AA510 VAL B 46 GLU B 49 -1 N CYS B 47 O TRP B 65 SHEET 3 AA510 GLY B 32 GLU B 39 -1 N SER B 37 O LYS B 48 SHEET 4 AA510 ARG B 23 SER B 29 -1 N SER B 29 O GLY B 32 SHEET 5 AA510 CYS B 186 VAL B 193 -1 O ILE B 192 N LEU B 24 SHEET 6 AA510 ILE B 155 ASN B 162 -1 N TYR B 158 O VAL B 193 SHEET 7 AA510 GLY B 133 ILE B 139 -1 N ALA B 136 O THR B 159 SHEET 8 AA510 VAL B 242 LEU B 244 -1 O ILE B 243 N ILE B 137 SHEET 9 AA510 VAL B 81 VAL B 84 1 N ILE B 82 O VAL B 242 SHEET 10 AA510 ILE B 105 LYS B 108 -1 O LYS B 108 N VAL B 81 SHEET 1 AA6 4 ARG B 71 LEU B 72 0 SHEET 2 AA6 4 ARG B 23 SER B 29 -1 N ALA B 28 O ARG B 71 SHEET 3 AA6 4 CYS B 186 VAL B 193 -1 O ILE B 192 N LEU B 24 SHEET 4 AA6 4 ILE B 113 ILE B 114 1 N ILE B 114 O LEU B 188 SHEET 1 AA7 5 ILE B 120 LEU B 122 0 SHEET 2 AA7 5 GLY B 268 ARG B 276 1 O VAL B 275 N LEU B 122 SHEET 3 AA7 5 THR B 259 VAL B 264 -1 N ILE B 262 O LEU B 270 SHEET 4 AA7 5 GLU B 202 VAL B 207 -1 N GLU B 206 O SER B 261 SHEET 5 AA7 5 GLN B 210 ARG B 216 -1 O ARG B 212 N THR B 205 SHEET 1 AA8 3 SER B 165 ALA B 166 0 SHEET 2 AA8 3 VAL B 129 HIS B 131 -1 N HIS B 130 O SER B 165 SHEET 3 AA8 3 GLY B 252 PRO B 253 -1 O GLY B 252 N HIS B 131 LINK O VAL A 84 NA NA A 301 1555 1555 3.08 LINK OE1 GLU A 132 NA NA A 301 1555 1555 3.10 LINK OE2 GLU A 134 NA NA A 301 1555 1555 2.35 LINK O ALA A 152 NA NA A 302 1555 1555 2.51 LINK O ILE A 155 NA NA A 302 1555 1555 3.04 LINK OD2 ASP A 163 NA NA A 301 1555 1555 2.46 LINK NA NA A 301 O HOH A 554 1555 1555 2.90 LINK NA NA A 302 O HOH A 421 1555 1555 2.80 LINK NA NA A 302 O HOH A 490 1555 1555 2.61 LINK NA NA A 302 O HOH A 592 1555 1555 3.10 CISPEP 1 ASP A 127 PRO A 128 0 -0.64 CISPEP 2 GLY A 189 PRO A 190 0 3.81 CISPEP 3 GLU B 94 MET B 95 0 -10.74 CISPEP 4 MET B 95 GLY B 96 0 9.77 CISPEP 5 GLY B 96 GLY B 97 0 -3.95 CISPEP 6 ASP B 127 PRO B 128 0 -5.48 CISPEP 7 GLY B 189 PRO B 190 0 2.87 SITE 1 AC1 5 VAL A 84 GLU A 132 GLU A 134 ASP A 163 SITE 2 AC1 5 HOH A 554 SITE 1 AC2 5 ALA A 152 ILE A 155 HOH A 421 HOH A 490 SITE 2 AC2 5 HOH A 592 CRYST1 137.000 53.740 69.750 90.00 107.76 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007299 0.000000 0.002338 0.00000 SCALE2 0.000000 0.018608 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015055 0.00000