HEADER IMMUNE SYSTEM/HYDROLASE 02-MAY-14 4PGJ TITLE HUMAN HEAVY-CHAIN DOMAIN ANTIBODY IN COMPLEX WITH HEN EGG-WHITE TITLE 2 LYSOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HUMAN HEAVY CHAIN DOMAIN ANTIBODY; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LYSOZYME C; COMPND 7 CHAIN: B, D; COMPND 8 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C,ALLERGEN GAL D IV; COMPND 9 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_TAXID: 9606; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 8 ORGANISM_COMMON: CHICKEN; SOURCE 9 ORGANISM_TAXID: 9031 KEYWDS ANTIBODY HUMAN DAB CLEFT BINDER DAB-HEL COMPLEX, IMMUNE SYSTEM- KEYWDS 2 HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR D.CHRIST,D.B.LANGLEY,R.ROUET REVDAT 5 27-DEC-23 4PGJ 1 REMARK REVDAT 4 01-NOV-17 4PGJ 1 SOURCE REMARK REVDAT 3 27-MAY-15 4PGJ 1 KEYWDS REVDAT 2 18-MAR-15 4PGJ 1 JRNL REVDAT 1 11-MAR-15 4PGJ 0 JRNL AUTH R.ROUET,K.DUDGEON,M.CHRISTIE,D.LANGLEY,D.CHRIST JRNL TITL FULLY HUMAN VH SINGLE DOMAINS THAT RIVAL THE STABILITY AND JRNL TITL 2 CLEFT RECOGNITION OF CAMELID ANTIBODIES. JRNL REF J.BIOL.CHEM. V. 290 11905 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25737448 JRNL DOI 10.1074/JBC.M114.614842 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0111 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.08 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 15980 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.287 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 851 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1106 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.3790 REMARK 3 BIN FREE R VALUE SET COUNT : 54 REMARK 3 BIN FREE R VALUE : 0.4560 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3380 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.40000 REMARK 3 B22 (A**2) : 2.38000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.50000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.699 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.350 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.240 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 24.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.919 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.879 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3471 ; 0.015 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 2145 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4744 ; 1.583 ; 1.909 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5137 ; 1.012 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 475 ; 7.481 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;36.738 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 389 ;14.222 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 16 ;18.608 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 501 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4140 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 800 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 120 REMARK 3 ORIGIN FOR THE GROUP (A): 42.7136 -24.5172 -11.7432 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.1913 REMARK 3 T33: 0.1192 T12: -0.1106 REMARK 3 T13: -0.0731 T23: -0.0287 REMARK 3 L TENSOR REMARK 3 L11: 2.6159 L22: 5.0414 REMARK 3 L33: 1.7481 L12: -1.5071 REMARK 3 L13: 0.9529 L23: -1.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.1541 S12: -0.0718 S13: -0.0002 REMARK 3 S21: 0.4490 S22: -0.0741 S23: -0.1384 REMARK 3 S31: -0.1355 S32: 0.1837 S33: -0.0800 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 128 REMARK 3 ORIGIN FOR THE GROUP (A): 22.3488 -12.5435 -26.7083 REMARK 3 T TENSOR REMARK 3 T11: 0.0707 T22: 0.0654 REMARK 3 T33: 0.1368 T12: -0.0111 REMARK 3 T13: 0.0303 T23: -0.0131 REMARK 3 L TENSOR REMARK 3 L11: 2.6522 L22: 1.6065 REMARK 3 L33: 3.9122 L12: -0.3965 REMARK 3 L13: 0.6471 L23: -0.8909 REMARK 3 S TENSOR REMARK 3 S11: 0.0271 S12: -0.2108 S13: 0.0566 REMARK 3 S21: 0.1836 S22: -0.0455 S23: 0.2307 REMARK 3 S31: -0.1467 S32: -0.2415 S33: 0.0184 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 3 C 120 REMARK 3 ORIGIN FOR THE GROUP (A): -21.0433 -28.6557 -57.8710 REMARK 3 T TENSOR REMARK 3 T11: 0.0797 T22: 0.3241 REMARK 3 T33: 0.0582 T12: -0.0668 REMARK 3 T13: -0.0113 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 3.0987 L22: 2.6469 REMARK 3 L33: 3.6080 L12: 1.6692 REMARK 3 L13: -0.5347 L23: 1.0204 REMARK 3 S TENSOR REMARK 3 S11: -0.2340 S12: 0.4704 S13: -0.1265 REMARK 3 S21: -0.2974 S22: 0.2477 S23: -0.0725 REMARK 3 S31: -0.1049 S32: -0.4262 S33: -0.0137 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 128 REMARK 3 ORIGIN FOR THE GROUP (A): -7.3075 -16.7186 -36.9905 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.0601 REMARK 3 T33: 0.1678 T12: -0.0025 REMARK 3 T13: -0.0074 T23: 0.0140 REMARK 3 L TENSOR REMARK 3 L11: 2.8133 L22: 1.3018 REMARK 3 L33: 3.4558 L12: 0.2298 REMARK 3 L13: -0.2443 L23: 0.6316 REMARK 3 S TENSOR REMARK 3 S11: -0.0084 S12: 0.0808 S13: -0.0349 REMARK 3 S21: -0.0506 S22: -0.0148 S23: -0.0759 REMARK 3 S31: -0.0548 S32: -0.0845 S33: 0.0231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4PGJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201358. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : AUSTRALIAN SYNCHROTRON REMARK 200 BEAMLINE : MX2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.954 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16831 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 49.080 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.61 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN AT 4.4 MG/ML IN 50 MM TRIS (PH REMARK 280 7.5) AMD 150 MM NACL. WELL SOLUTION CONTAINED 28% (W/V) PEG1500, REMARK 280 100 MM NA-CITRATE (PH 5.4). 400 NL OF WELL SOLUTION AND PROTEIN REMARK 280 SOLUTION WERE COMBINED., VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z+1/2 REMARK 290 4555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 36.72800 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.20524 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 36.72800 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 67.20524 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS REPORT ASSEMBLY CONFIRMED BY GEL FILTRATION AND REMARK 300 MALLS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1570 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 1 REMARK 465 SER A 121 REMARK 465 GLY B 102 REMARK 465 LEU B 129 REMARK 465 GLU C 1 REMARK 465 VAL C 2 REMARK 465 ASP C 30 REMARK 465 ALA C 31 REMARK 465 ALA C 40 REMARK 465 PRO C 41 REMARK 465 GLY C 42 REMARK 465 ASP C 73 REMARK 465 ASN C 74 REMARK 465 SER C 75 REMARK 465 LYS C 76 REMARK 465 SER C 121 REMARK 465 LEU D 129 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL A 2 CG1 CG2 REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 LEU A 5 CG CD1 CD2 REMARK 470 SER A 7 OG REMARK 470 LEU A 11 CG CD1 CD2 REMARK 470 VAL A 12 CG1 CG2 REMARK 470 GLN A 13 CG CD OE1 NE2 REMARK 470 SER A 17 OG REMARK 470 LEU A 18 CG CD1 CD2 REMARK 470 SER A 21 OG REMARK 470 SER A 25 OG REMARK 470 ARG A 28 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 30 CG OD1 OD2 REMARK 470 GLU A 32 CG CD OE1 OE2 REMARK 470 LYS A 43 CG CD CE NZ REMARK 470 GLU A 46 CG CD OE1 OE2 REMARK 470 SER A 55 OG REMARK 470 SER A 57 OG REMARK 470 ASP A 62 CG OD1 OD2 REMARK 470 SER A 63 OG REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 THR A 69 OG1 CG2 REMARK 470 SER A 71 OG REMARK 470 ASP A 73 CG OD1 OD2 REMARK 470 ASN A 74 CG OD1 ND2 REMARK 470 SER A 75 OG REMARK 470 LYS A 76 CG CD CE NZ REMARK 470 ASN A 77 CG OD1 ND2 REMARK 470 THR A 78 OG1 CG2 REMARK 470 GLN A 82 CG CD OE1 NE2 REMARK 470 SER A 85 OG REMARK 470 LEU A 86 CG CD1 CD2 REMARK 470 ARG A 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 SER A 101 OG REMARK 470 VAL A 119 CG1 CG2 REMARK 470 SER A 120 OG REMARK 470 LYS B 13 CG CD CE NZ REMARK 470 ARG B 14 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 44 CG OD1 ND2 REMARK 470 ARG B 45 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 68 CG CD NE CZ NH1 NH2 REMARK 470 SER B 72 OG REMARK 470 ARG B 73 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 75 CG CD1 CD2 REMARK 470 ASN B 77 CG OD1 ND2 REMARK 470 ILE B 78 CG1 CG2 CD1 REMARK 470 SER B 81 OG REMARK 470 SER B 85 OG REMARK 470 SER B 86 OG REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 VAL B 99 CG1 CG2 REMARK 470 ASP B 101 CG OD1 OD2 REMARK 470 ASN B 103 CG OD1 ND2 REMARK 470 ARG B 114 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 128 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 3 CG CD OE1 NE2 REMARK 470 LEU C 4 CG CD1 CD2 REMARK 470 LEU C 5 CG CD1 CD2 REMARK 470 SER C 7 OG REMARK 470 LEU C 11 CG CD1 CD2 REMARK 470 VAL C 12 CG1 CG2 REMARK 470 GLN C 13 CG CD OE1 NE2 REMARK 470 SER C 17 OG REMARK 470 LEU C 18 CG CD1 CD2 REMARK 470 ARG C 19 CG CD NE CZ NH1 NH2 REMARK 470 SER C 21 OG REMARK 470 SER C 25 OG REMARK 470 ARG C 28 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 32 CG CD OE1 OE2 REMARK 470 VAL C 37 CG1 CG2 REMARK 470 LYS C 43 CG CD CE NZ REMARK 470 LEU C 45 CG CD1 CD2 REMARK 470 GLU C 46 CG CD OE1 OE2 REMARK 470 ILE C 51 CG1 CG2 CD1 REMARK 470 SER C 55 OG REMARK 470 THR C 58 OG1 CG2 REMARK 470 ASP C 62 CG OD1 OD2 REMARK 470 SER C 63 OG REMARK 470 VAL C 64 CG1 CG2 REMARK 470 LYS C 65 CG CD CE NZ REMARK 470 THR C 69 OG1 CG2 REMARK 470 SER C 71 OG REMARK 470 ARG C 72 CG CD NE CZ NH1 NH2 REMARK 470 ASN C 77 CG OD1 ND2 REMARK 470 THR C 78 OG1 CG2 REMARK 470 GLN C 82 CG CD OE1 NE2 REMARK 470 SER C 85 OG REMARK 470 LEU C 86 CG CD1 CD2 REMARK 470 ARG C 87 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 89 CG CD OE1 OE2 REMARK 470 THR C 91 OG1 CG2 REMARK 470 VAL C 93 CG1 CG2 REMARK 470 THR C 100 OG1 CG2 REMARK 470 SER C 101 OG REMARK 470 ASP C 109 CG OD1 OD2 REMARK 470 THR C 115 OG1 CG2 REMARK 470 VAL C 117 CG1 CG2 REMARK 470 THR C 118 OG1 CG2 REMARK 470 SER C 120 OG REMARK 470 VAL D 2 CG1 CG2 REMARK 470 LYS D 13 CG CD CE NZ REMARK 470 ARG D 14 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 21 CG CD NE CZ NH1 NH2 REMARK 470 GLN D 41 CG CD OE1 NE2 REMARK 470 ASN D 44 CG OD1 ND2 REMARK 470 ARG D 45 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 68 CG CD NE CZ NH1 NH2 REMARK 470 SER D 72 OG REMARK 470 ARG D 73 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 78 CG1 CG2 CD1 REMARK 470 SER D 81 OG REMARK 470 SER D 85 OG REMARK 470 SER D 86 OG REMARK 470 LYS D 97 CG CD CE NZ REMARK 470 VAL D 99 CG1 CG2 REMARK 470 SER D 100 OG REMARK 470 ASP D 101 CG OD1 OD2 REMARK 470 ASN D 103 CG OD1 ND2 REMARK 470 ILE D 124 CG1 CG2 CD1 REMARK 470 ARG D 128 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP D 18 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 101 69.45 -160.67 REMARK 500 GLN B 57 68.38 33.90 REMARK 500 ASN B 74 60.83 32.91 REMARK 500 SER B 86 158.17 -49.91 REMARK 500 ASP B 87 96.97 77.37 REMARK 500 ARG C 28 87.13 -69.41 REMARK 500 GLN D 57 61.10 36.86 REMARK 500 LEU D 84 58.45 -105.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 85 SER B 86 147.86 REMARK 500 SER D 72 ARG D 73 149.98 REMARK 500 REMARK 500 REMARK: NULL DBREF 4PGJ A 1 121 PDB 4PGJ 4PGJ 1 121 DBREF 4PGJ B 1 129 UNP P00698 LYSC_CHICK 19 147 DBREF 4PGJ C 1 121 PDB 4PGJ 4PGJ 1 121 DBREF 4PGJ D 1 129 UNP P00698 LYSC_CHICK 19 147 SEQRES 1 A 121 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 121 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 121 PHE ARG PHE ASP ALA GLU ASP MET GLY TRP VAL ARG GLN SEQRES 4 A 121 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER SER ILE TYR SEQRES 5 A 121 GLY PRO SER GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 A 121 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 A 121 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 121 ALA VAL TYR TYR CYS ALA LYS TYR THR SER PRO PRO GLN SEQRES 9 A 121 ASN HIS GLY PHE ASP TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 A 121 THR VAL SER SER SEQRES 1 B 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 B 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 B 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 B 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 B 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 B 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 B 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 B 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 B 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 B 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 C 121 GLU VAL GLN LEU LEU GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 121 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 121 PHE ARG PHE ASP ALA GLU ASP MET GLY TRP VAL ARG GLN SEQRES 4 C 121 ALA PRO GLY LYS GLY LEU GLU TRP VAL SER SER ILE TYR SEQRES 5 C 121 GLY PRO SER GLY SER THR TYR TYR ALA ASP SER VAL LYS SEQRES 6 C 121 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 C 121 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 C 121 ALA VAL TYR TYR CYS ALA LYS TYR THR SER PRO PRO GLN SEQRES 9 C 121 ASN HIS GLY PHE ASP TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 C 121 THR VAL SER SER SEQRES 1 D 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 D 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 D 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 D 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 D 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 D 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 D 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 D 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 D 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 D 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU HELIX 1 AA1 ARG A 87 THR A 91 5 5 HELIX 2 AA2 GLY B 4 HIS B 15 1 12 HELIX 3 AA3 ASN B 19 TYR B 23 5 5 HELIX 4 AA4 SER B 24 ASN B 37 1 14 HELIX 5 AA5 PRO B 79 SER B 85 5 7 HELIX 6 AA6 ILE B 88 ASP B 101 1 14 HELIX 7 AA7 ASN B 103 ALA B 107 5 5 HELIX 8 AA8 TRP B 108 CYS B 115 1 8 HELIX 9 AA9 ASP B 119 ARG B 125 5 7 HELIX 10 AB1 ARG C 87 THR C 91 5 5 HELIX 11 AB2 GLY D 4 HIS D 15 1 12 HELIX 12 AB3 ASN D 19 TYR D 23 5 5 HELIX 13 AB4 SER D 24 ASN D 37 1 14 HELIX 14 AB5 PRO D 79 LEU D 84 5 6 HELIX 15 AB6 ILE D 88 SER D 100 1 13 HELIX 16 AB7 ASN D 103 ALA D 107 5 5 HELIX 17 AB8 TRP D 108 CYS D 115 1 8 HELIX 18 AB9 ASP D 119 ARG D 125 5 7 SHEET 1 AA1 4 GLN A 3 SER A 7 0 SHEET 2 AA1 4 LEU A 18 SER A 25 -1 O ALA A 23 N LEU A 5 SHEET 3 AA1 4 THR A 78 MET A 83 -1 O MET A 83 N LEU A 18 SHEET 4 AA1 4 PHE A 68 ASP A 73 -1 N SER A 71 O TYR A 80 SHEET 1 AA2 6 LEU A 11 VAL A 12 0 SHEET 2 AA2 6 THR A 115 VAL A 119 1 O THR A 118 N VAL A 12 SHEET 3 AA2 6 ALA A 92 LYS A 98 -1 N TYR A 94 O THR A 115 SHEET 4 AA2 6 MET A 34 GLN A 39 -1 N VAL A 37 O TYR A 95 SHEET 5 AA2 6 LEU A 45 TYR A 52 -1 O GLU A 46 N ARG A 38 SHEET 6 AA2 6 SER A 57 TYR A 60 -1 O SER A 57 N TYR A 52 SHEET 1 AA3 4 LEU A 11 VAL A 12 0 SHEET 2 AA3 4 THR A 115 VAL A 119 1 O THR A 118 N VAL A 12 SHEET 3 AA3 4 ALA A 92 LYS A 98 -1 N TYR A 94 O THR A 115 SHEET 4 AA3 4 TYR A 110 TRP A 111 -1 O TYR A 110 N LYS A 98 SHEET 1 AA4 3 THR B 43 ARG B 45 0 SHEET 2 AA4 3 THR B 51 TYR B 53 -1 O ASP B 52 N ASN B 44 SHEET 3 AA4 3 ILE B 58 ASN B 59 -1 O ILE B 58 N TYR B 53 SHEET 1 AA5 4 LEU C 4 SER C 7 0 SHEET 2 AA5 4 LEU C 18 ALA C 24 -1 O ALA C 23 N LEU C 5 SHEET 3 AA5 4 THR C 78 MET C 83 -1 O LEU C 81 N LEU C 20 SHEET 4 AA5 4 PHE C 68 SER C 71 -1 N SER C 71 O TYR C 80 SHEET 1 AA6 6 LEU C 11 VAL C 12 0 SHEET 2 AA6 6 THR C 115 VAL C 119 1 O THR C 118 N VAL C 12 SHEET 3 AA6 6 ALA C 92 LYS C 98 -1 N TYR C 94 O THR C 115 SHEET 4 AA6 6 MET C 34 ARG C 38 -1 N VAL C 37 O TYR C 95 SHEET 5 AA6 6 GLU C 46 TYR C 52 -1 O ILE C 51 N MET C 34 SHEET 6 AA6 6 SER C 57 TYR C 60 -1 O TYR C 59 N SER C 50 SHEET 1 AA7 4 LEU C 11 VAL C 12 0 SHEET 2 AA7 4 THR C 115 VAL C 119 1 O THR C 118 N VAL C 12 SHEET 3 AA7 4 ALA C 92 LYS C 98 -1 N TYR C 94 O THR C 115 SHEET 4 AA7 4 TYR C 110 TRP C 111 -1 O TYR C 110 N LYS C 98 SHEET 1 AA8 3 THR D 43 ARG D 45 0 SHEET 2 AA8 3 THR D 51 TYR D 53 -1 O ASP D 52 N ASN D 44 SHEET 3 AA8 3 ILE D 58 ASN D 59 -1 O ILE D 58 N TYR D 53 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.05 SSBOND 2 CYS B 6 CYS B 127 1555 1555 2.07 SSBOND 3 CYS B 30 CYS B 115 1555 1555 2.13 SSBOND 4 CYS B 64 CYS B 80 1555 1555 2.05 SSBOND 5 CYS B 76 CYS B 94 1555 1555 2.05 SSBOND 6 CYS C 22 CYS C 96 1555 1555 2.06 SSBOND 7 CYS D 6 CYS D 127 1555 1555 2.11 SSBOND 8 CYS D 30 CYS D 115 1555 1555 2.09 SSBOND 9 CYS D 64 CYS D 80 1555 1555 2.03 SSBOND 10 CYS D 76 CYS D 94 1555 1555 2.05 CISPEP 1 PRO A 41 GLY A 42 0 -24.23 CISPEP 2 PRO A 102 PRO A 103 0 -0.16 CISPEP 3 PRO C 102 PRO C 103 0 -3.33 CRYST1 100.070 40.310 137.020 90.00 101.20 90.00 I 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009993 0.000000 0.001978 0.00000 SCALE2 0.000000 0.024808 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007440 0.00000