HEADER OXIDOREDUCTASE 02-MAY-14 4PGK
TITLE INSIGHTS INTO SUBSTRATE AND METAL BINDING FROM THE CRYSTAL STRUCTURE
TITLE 2 OF CYANOBACTERIAL ALDEHYDE DEFORMYLATING OXYGENASE WITH SUBSTRATE
TITLE 3 BOUND
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: ALDEHYDE DECARBONYLASE;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 1-243;
COMPND 5 SYNONYM: AD,FATTY ALDEHYDE DECARBONYLASE;
COMPND 6 EC: 4.1.99.5;
COMPND 7 ENGINEERED: YES;
COMPND 8 MUTATION: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: PROCHLOROCOCCUS MARINUS;
SOURCE 3 ORGANISM_TAXID: 74547;
SOURCE 4 STRAIN: MIT 9313;
SOURCE 5 GENE: PMT_1231;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562
KEYWDS NON-HEME DI-IRON PROTEIN, HYDROCARBON PRODUCTION, ALPHA-HELIX,
KEYWDS 2 OXIDOREDUCTASE
EXPDTA X-RAY DIFFRACTION
AUTHOR B.C.BUER,B.PAUL,D.DAS,J.A.STUCKEY,E.N.G.MARSH
REVDAT 3 27-SEP-23 4PGK 1 REMARK
REVDAT 2 22-NOV-17 4PGK 1 SOURCE REMARK
REVDAT 1 24-DEC-14 4PGK 0
JRNL AUTH B.C.BUER,B.PAUL,D.DAS,J.A.STUCKEY,E.N.MARSH
JRNL TITL INSIGHTS INTO SUBSTRATE AND METAL BINDING FROM THE CRYSTAL
JRNL TITL 2 STRUCTURE OF CYANOBACTERIAL ALDEHYDE DEFORMYLATING OXYGENASE
JRNL TITL 3 WITH SUBSTRATE BOUND.
JRNL REF ACS CHEM.BIOL. V. 9 2584 2014
JRNL REFN ESSN 1554-8937
JRNL PMID 25222710
JRNL DOI 10.1021/CB500343J
REMARK 2
REMARK 2 RESOLUTION. 2.17 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : BUSTER 2.10.0
REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER,
REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN,
REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.13
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 3 NUMBER OF REFLECTIONS : 19412
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.219
REMARK 3 R VALUE (WORKING SET) : 0.219
REMARK 3 FREE R VALUE : 0.223
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120
REMARK 3 FREE R VALUE TEST SET COUNT : 995
REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 10
REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.17
REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.29
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98
REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2784
REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2307
REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2628
REMARK 3 BIN R VALUE (WORKING SET) : 0.2282
REMARK 3 BIN FREE R VALUE : 0.2727
REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.60
REMARK 3 BIN FREE R VALUE TEST SET COUNT : 156
REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 1732
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 23
REMARK 3 SOLVENT ATOMS : 86
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : 40.59
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.51
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 2.89210
REMARK 3 B22 (A**2) : 2.89210
REMARK 3 B33 (A**2) : -5.78410
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : 0.00000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED COORDINATE ERROR.
REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.334
REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.211
REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.159
REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.200
REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.156
REMARK 3
REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797
REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.938
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925
REMARK 3
REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15
REMARK 3 TERM COUNT WEIGHT FUNCTION.
REMARK 3 BOND LENGTHS : 1949 ; 2.000 ; HARMONIC
REMARK 3 BOND ANGLES : 2636 ; 2.000 ; HARMONIC
REMARK 3 TORSION ANGLES : 687 ; 2.000 ; SINUSOIDAL
REMARK 3 TRIGONAL CARBON PLANES : 56 ; 2.000 ; HARMONIC
REMARK 3 GENERAL PLANES : 286 ; 5.000 ; HARMONIC
REMARK 3 ISOTROPIC THERMAL FACTORS : 1949 ; 20.000 ; HARMONIC
REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC
REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL
REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL
REMARK 3 CHIRAL IMPROPER TORSION : 256 ; 5.000 ; SEMIHARMONIC
REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL
REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL
REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL
REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL
REMARK 3 IDEAL-DIST CONTACT TERM : 2374 ; 4.000 ; SEMIHARMONIC
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES.
REMARK 3 BOND LENGTHS (A) : 0.008
REMARK 3 BOND ANGLES (DEGREES) : 0.97
REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.02
REMARK 3 OTHER TORSION ANGLES (DEGREES) : 18.47
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 1
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: { A|* }
REMARK 3 ORIGIN FOR THE GROUP (A): -20.2646 2.4129 -9.6570
REMARK 3 T TENSOR
REMARK 3 T11: -0.0250 T22: -0.1175
REMARK 3 T33: -0.0545 T12: -0.0162
REMARK 3 T13: -0.0437 T23: 0.0604
REMARK 3 L TENSOR
REMARK 3 L11: 1.1716 L22: 1.6156
REMARK 3 L33: 1.0505 L12: -0.2117
REMARK 3 L13: -0.3839 L23: -0.2333
REMARK 3 S TENSOR
REMARK 3 S11: -0.0095 S12: -0.0330 S13: -0.0201
REMARK 3 S21: 0.0525 S22: 0.0114 S23: 0.0372
REMARK 3 S31: -0.0348 S32: 0.0037 S33: -0.0019
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4PGK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-MAY-14.
REMARK 100 THE DEPOSITION ID IS D_1000201359.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 11-OCT-12
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : NULL
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : APS
REMARK 200 BEAMLINE : 21-ID-G
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856
REMARK 200 MONOCHROMATOR : SI[111]
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000
REMARK 200 DATA SCALING SOFTWARE : NULL
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19412
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.170
REMARK 200 RESOLUTION RANGE LOW (A) : 22.130
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 14.40
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 20.0000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL
REMARK 200 COMPLETENESS FOR SHELL (%) : NULL
REMARK 200 DATA REDUNDANCY IN SHELL : NULL
REMARK 200 R MERGE FOR SHELL (I) : NULL
REMARK 200 R SYM FOR SHELL (I) : NULL
REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER
REMARK 200 STARTING MODEL: 4TW3
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 64.89
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG3350, 0.3 M NACL, VAPOR
REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,-Y,Z+1/2
REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4
REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4
REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4
REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4
REMARK 290 7555 Y,X,-Z
REMARK 290 8555 -Y,-X,-Z+1/2
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.48000
REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.67000
REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.67000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 87.72000
REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.67000
REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.67000
REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 29.24000
REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.67000
REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.67000
REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 87.72000
REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.67000
REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.67000
REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 29.24000
REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 58.48000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 0
REMARK 465 MET A 1
REMARK 465 PRO A 2
REMARK 465 THR A 3
REMARK 465 LEU A 4
REMARK 465 GLU A 5
REMARK 465 MET A 6
REMARK 465 PRO A 7
REMARK 465 VAL A 8
REMARK 465 ALA A 9
REMARK 465 ALA A 10
REMARK 465 VAL A 11
REMARK 465 LEU A 12
REMARK 465 ASP A 13
REMARK 465 SER A 14
REMARK 465 THR A 15
REMARK 465 VAL A 16
REMARK 465 GLY A 17
REMARK 465 SER A 18
REMARK 465 SER A 19
REMARK 465 GLU A 20
REMARK 465 VAL A 242
REMARK 465 SER A 243
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 LYS A 71 NZ
REMARK 470 LYS A 148 CD CE NZ
REMARK 470 LYS A 155 CD CE NZ
REMARK 470 TYR A 158 CG CD1 CD2 CE1 CE2 CZ OH
REMARK 470 ARG A 192 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION
REMARK 500 GLU A 157 CB GLU A 157 CG 0.498
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: COVALENT BOND ANGLES
REMARK 500
REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES
REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE
REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1)
REMARK 500
REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999
REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996
REMARK 500
REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3
REMARK 500 GLU A 157 CA - CB - CG ANGL. DEV. = 20.9 DEGREES
REMARK 500 GLU A 157 CB - CG - CD ANGL. DEV. = 31.5 DEGREES
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 LEU A 125 -67.02 -106.57
REMARK 500 LYS A 155 -70.80 -47.30
REMARK 500 LYS A 155 32.79 -74.90
REMARK 500 ASP A 156 20.96 -75.03
REMARK 500 ASP A 156 -32.07 -162.26
REMARK 500 GLU A 157 -45.82 -27.47
REMARK 500 GLN A 205 30.09 71.35
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 FE A 301 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 GLU A 45 OE1
REMARK 620 2 GLU A 45 OE2 54.4
REMARK 620 3 GLU A 73 OE1 89.0 142.5
REMARK 620 4 GLU A 157 OE2 157.7 105.1 109.3
REMARK 620 N 1 2 3
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 FE A 302 FE
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 TYR A 52 OH
REMARK 620 2 GLU A 73 OE2 66.2
REMARK 620 3 GLU A 128 OE1 108.2 160.8
REMARK 620 4 GLU A 128 OE2 58.7 107.9 56.7
REMARK 620 5 HIS A 160 ND1 53.8 90.1 101.1 91.8
REMARK 620 6 Y69 A 303 OAB 137.1 123.2 47.6 80.0 146.6
REMARK 620 7 Y69 A 303 OAB 103.0 77.5 86.4 73.7 156.7 50.1
REMARK 620 N 1 2 3 4 5 6
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 301
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue FE A 302
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue Y69 A 303
DBREF 4PGK A 1 243 UNP Q7V6D4 ALDEC_PROMM 1 243
SEQADV 4PGK GLY A 0 UNP Q7V6D4 EXPRESSION TAG
SEQADV 4PGK LYS A 90 UNP Q7V6D4 GLU 90 ENGINEERED MUTATION
SEQADV 4PGK LEU A 191 UNP Q7V6D4 ARG 191 ENGINEERED MUTATION
SEQRES 1 A 244 GLY MET PRO THR LEU GLU MET PRO VAL ALA ALA VAL LEU
SEQRES 2 A 244 ASP SER THR VAL GLY SER SER GLU ALA LEU PRO ASP PHE
SEQRES 3 A 244 THR SER ASP ARG TYR LYS ASP ALA TYR SER ARG ILE ASN
SEQRES 4 A 244 ALA ILE VAL ILE GLU GLY GLU GLN GLU ALA HIS ASP ASN
SEQRES 5 A 244 TYR ILE ALA ILE GLY THR LEU LEU PRO ASP HIS VAL GLU
SEQRES 6 A 244 GLU LEU LYS ARG LEU ALA LYS MET GLU MET ARG HIS LYS
SEQRES 7 A 244 LYS GLY PHE THR ALA CYS GLY LYS ASN LEU GLY VAL LYS
SEQRES 8 A 244 ALA ASP MET ASP PHE ALA ARG GLU PHE PHE ALA PRO LEU
SEQRES 9 A 244 ARG ASP ASN PHE GLN THR ALA LEU GLY GLN GLY LYS THR
SEQRES 10 A 244 PRO THR CYS LEU LEU ILE GLN ALA LEU LEU ILE GLU ALA
SEQRES 11 A 244 PHE ALA ILE SER ALA TYR HIS THR TYR ILE PRO VAL SER
SEQRES 12 A 244 ASP PRO PHE ALA ARG LYS ILE THR GLU GLY VAL VAL LYS
SEQRES 13 A 244 ASP GLU TYR THR HIS LEU ASN TYR GLY GLU ALA TRP LEU
SEQRES 14 A 244 LYS ALA ASN LEU GLU SER CYS ARG GLU GLU LEU LEU GLU
SEQRES 15 A 244 ALA ASN ARG GLU ASN LEU PRO LEU ILE LEU ARG MET LEU
SEQRES 16 A 244 ASP GLN VAL ALA GLY ASP ALA ALA VAL LEU GLN MET ASP
SEQRES 17 A 244 LYS GLU ASP LEU ILE GLU ASP PHE LEU ILE ALA TYR GLN
SEQRES 18 A 244 GLU SER LEU THR GLU ILE GLY PHE ASN THR ARG GLU ILE
SEQRES 19 A 244 THR ARG MET ALA ALA ALA ALA LEU VAL SER
HET FE A 301 1
HET FE A 302 1
HET Y69 A 303 42
HETNAM FE FE (III) ION
HETNAM Y69 11-[2-(2-ETHOXYETHOXY)ETHOXY]UNDECANAL
FORMUL 2 FE 2(FE 3+)
FORMUL 4 Y69 C17 H34 O4
FORMUL 5 HOH *86(H2 O)
HELIX 1 AA1 SER A 27 LEU A 59 1 33
HELIX 2 AA2 HIS A 62 LEU A 87 1 26
HELIX 3 AA3 ASP A 92 GLN A 113 1 22
HELIX 4 AA4 LYS A 115 LEU A 125 1 11
HELIX 5 AA5 LEU A 125 ILE A 139 1 15
HELIX 6 AA6 PRO A 140 SER A 142 5 3
HELIX 7 AA7 ASP A 143 LEU A 204 1 62
HELIX 8 AA8 ASP A 207 GLY A 227 1 21
HELIX 9 AA9 ASN A 229 ALA A 238 1 10
HELIX 10 AB1 ALA A 239 LEU A 241 5 3
LINK OE1 GLU A 45 FE FE A 301 1555 1555 2.10
LINK OE2 GLU A 45 FE FE A 301 1555 1555 2.61
LINK OH BTYR A 52 FE FE A 302 1555 1555 2.78
LINK OE1 GLU A 73 FE FE A 301 1555 1555 2.15
LINK OE2 GLU A 73 FE FE A 302 1555 1555 2.06
LINK OE1AGLU A 128 FE FE A 302 1555 1555 2.38
LINK OE2AGLU A 128 FE FE A 302 1555 1555 2.26
LINK OE2 GLU A 157 FE FE A 301 1555 1555 2.06
LINK ND1AHIS A 160 FE FE A 302 1555 1555 2.39
LINK FE FE A 302 OABBY69 A 303 1555 1555 1.99
LINK FE FE A 302 OABAY69 A 303 1555 1555 2.50
SITE 1 AC1 6 GLU A 45 GLU A 73 HIS A 76 GLU A 157
SITE 2 AC1 6 FE A 302 Y69 A 303
SITE 1 AC2 7 TYR A 52 GLU A 73 GLU A 128 GLU A 157
SITE 2 AC2 7 HIS A 160 FE A 301 Y69 A 303
SITE 1 AC3 24 TYR A 34 ILE A 37 ASN A 38 ILE A 40
SITE 2 AC3 24 VAL A 41 GLY A 44 GLU A 45 ALA A 48
SITE 3 AC3 24 GLU A 73 PHE A 80 GLN A 123 ILE A 127
SITE 4 AC3 24 GLU A 128 PHE A 130 ALA A 134 TYR A 135
SITE 5 AC3 24 TYR A 138 GLU A 157 ILE A 190 LEU A 194
SITE 6 AC3 24 LEU A 211 PHE A 215 FE A 301 FE A 302
CRYST1 77.340 77.340 116.960 90.00 90.00 90.00 P 43 21 2 8
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.012930 0.000000 0.000000 0.00000
SCALE2 0.000000 0.012930 0.000000 0.00000
SCALE3 0.000000 0.000000 0.008550 0.00000