HEADER HYDROLASE 06-MAY-14 4PHK TITLE THE STRUCTURAL BASIS OF DIFFERENTIAL INHIBITION OF HUMAN CALPAIN BY TITLE 2 INDOLE AND PHENYL ALPHA-MERCAPTOACRYLIC ACIDS. THE COMPLEX WITH (Z)- TITLE 3 3-(4-CHLOROPHENYL)-2-MERCAPTOACRYLIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALPAIN SMALL SUBUNIT 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 96-268; COMPND 5 SYNONYM: CSS1,CALCIUM-ACTIVATED NEUTRAL PROTEINASE SMALL SUBUNIT,CANP COMPND 6 SMALL SUBUNIT,CALCIUM-DEPENDENT PROTEASE SMALL SUBUNIT,CDPS,CALCIUM- COMPND 7 DEPENDENT PROTEASE SMALL SUBUNIT 1,CALPAIN REGULATORY SUBUNIT; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CAPNS1, CAPN4, CAPNS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DOMAIN VI, PEF(S), CALCIUM BINDING, PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.RIZKALLAH,R.K.ALLEMANN,S.E.ADAMS,D.J.MILLER,M.B.HALLETT, AUTHOR 2 E.ROBINSON REVDAT 5 13-SEP-17 4PHK 1 LINK SITE ATOM REVDAT 4 04-FEB-15 4PHK 1 REMARK REVDAT 3 01-OCT-14 4PHK 1 AUTHOR REVDAT 2 17-SEP-14 4PHK 1 JRNL REVDAT 1 13-AUG-14 4PHK 0 JRNL AUTH S.E.ADAMS,P.J.RIZKALLAH,D.J.MILLER,E.J.ROBINSON,M.B.HALLETT, JRNL AUTH 2 R.K.ALLEMANN JRNL TITL THE STRUCTURAL BASIS OF DIFFERENTIAL INHIBITION OF HUMAN JRNL TITL 2 CALPAIN BY INDOLE AND PHENYL ALPHA-MERCAPTOACRYLIC ACIDS. JRNL REF J.STRUCT.BIOL. V. 187 236 2014 JRNL REFN ESSN 1095-8657 JRNL PMID 25086406 JRNL DOI 10.1016/J.JSB.2014.07.004 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 80.09 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 90.7 REMARK 3 NUMBER OF REFLECTIONS : 24048 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1289 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1263 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.32 REMARK 3 BIN R VALUE (WORKING SET) : 0.5980 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.6130 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2806 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 34 REMARK 3 SOLVENT ATOMS : 140 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.89000 REMARK 3 B22 (A**2) : 1.24000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.03000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.247 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.212 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.183 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.240 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.922 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2899 ; 0.016 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2671 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3905 ; 1.742 ; 1.945 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6124 ; 0.933 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 6.143 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 155 ;32.958 ;24.194 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 514 ;18.106 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;13.575 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 412 ; 0.114 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3341 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 729 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1389 ; 1.934 ; 2.516 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1388 ; 1.933 ; 2.515 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1735 ; 2.895 ; 3.761 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1736 ; 2.895 ; 3.761 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1510 ; 2.471 ; 2.886 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1511 ; 2.470 ; 2.887 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2170 ; 3.800 ; 4.207 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3762 ; 6.648 ;21.610 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3739 ; 6.613 ;21.534 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 96 A 268 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8092 -0.1394 15.1835 REMARK 3 T TENSOR REMARK 3 T11: 0.1502 T22: 0.0402 REMARK 3 T33: 0.0375 T12: -0.0381 REMARK 3 T13: 0.0195 T23: -0.0124 REMARK 3 L TENSOR REMARK 3 L11: 1.9657 L22: 0.9902 REMARK 3 L33: 1.1994 L12: 0.3704 REMARK 3 L13: 0.3676 L23: -0.1858 REMARK 3 S TENSOR REMARK 3 S11: 0.1699 S12: -0.1921 S13: -0.0296 REMARK 3 S21: 0.1369 S22: -0.0777 S23: 0.1618 REMARK 3 S31: 0.1314 S32: -0.0695 S33: -0.0922 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 96 B 268 REMARK 3 ORIGIN FOR THE GROUP (A): 28.6770 9.8457 0.0649 REMARK 3 T TENSOR REMARK 3 T11: 0.1447 T22: 0.0222 REMARK 3 T33: 0.0659 T12: -0.0186 REMARK 3 T13: -0.0007 T23: 0.0082 REMARK 3 L TENSOR REMARK 3 L11: 2.1103 L22: 0.9362 REMARK 3 L33: 0.6811 L12: -0.0952 REMARK 3 L13: 0.0303 L23: 0.3873 REMARK 3 S TENSOR REMARK 3 S11: -0.0576 S12: 0.0220 S13: 0.0905 REMARK 3 S21: -0.1233 S22: 0.1123 S23: 0.0225 REMARK 3 S31: -0.1320 S32: 0.1014 S33: -0.0547 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 270 A 270 REMARK 3 ORIGIN FOR THE GROUP (A): 13.0321 -11.2759 22.0782 REMARK 3 T TENSOR REMARK 3 T11: 0.2195 T22: 0.4580 REMARK 3 T33: 0.5791 T12: 0.0267 REMARK 3 T13: -0.1048 T23: -0.0438 REMARK 3 L TENSOR REMARK 3 L11: 35.9178 L22: 26.1277 REMARK 3 L33: 12.3136 L12: -28.1742 REMARK 3 L13: -19.2678 L23: 17.9357 REMARK 3 S TENSOR REMARK 3 S11: 0.9072 S12: 1.3140 S13: 0.6013 REMARK 3 S21: -1.2039 S22: -1.5572 S23: 0.9244 REMARK 3 S31: -0.8381 S32: -1.0745 S33: 0.6500 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 270 B 270 REMARK 3 ORIGIN FOR THE GROUP (A): 39.3158 5.8764 -6.8801 REMARK 3 T TENSOR REMARK 3 T11: 0.4100 T22: 0.1498 REMARK 3 T33: 0.0951 T12: -0.0601 REMARK 3 T13: 0.1240 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 39.0543 L22: 9.7897 REMARK 3 L33: 26.2207 L12: -15.5536 REMARK 3 L13: 31.4583 L23: -10.7523 REMARK 3 S TENSOR REMARK 3 S11: -0.1052 S12: 0.7316 S13: 1.0760 REMARK 3 S21: 0.4712 S22: -0.9271 S23: -0.1107 REMARK 3 S31: 0.1641 S32: 0.2771 S33: 1.0323 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 19.0270 -3.6263 16.1339 REMARK 3 T TENSOR REMARK 3 T11: 0.0912 T22: 0.1132 REMARK 3 T33: 0.0419 T12: 0.0155 REMARK 3 T13: 0.0100 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 2.3282 L22: 6.1856 REMARK 3 L33: 10.9807 L12: 3.7650 REMARK 3 L13: 4.8097 L23: 7.4751 REMARK 3 S TENSOR REMARK 3 S11: 0.0132 S12: -0.0794 S13: 0.1361 REMARK 3 S21: -0.0275 S22: -0.1802 S23: 0.2520 REMARK 3 S31: 0.1096 S32: 0.0543 S33: 0.1670 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 301 B 304 REMARK 3 ORIGIN FOR THE GROUP (A): 29.8462 3.5040 -0.5338 REMARK 3 T TENSOR REMARK 3 T11: 0.1412 T22: 0.0803 REMARK 3 T33: 0.1114 T12: 0.0136 REMARK 3 T13: 0.0803 T23: -0.0137 REMARK 3 L TENSOR REMARK 3 L11: 2.1031 L22: 2.7478 REMARK 3 L33: 4.1288 L12: 0.4490 REMARK 3 L13: 1.4552 L23: 0.9787 REMARK 3 S TENSOR REMARK 3 S11: -0.0287 S12: 0.1013 S13: -0.0826 REMARK 3 S21: -0.0074 S22: 0.1318 S23: 0.0231 REMARK 3 S31: -0.0389 S32: 0.0620 S33: -0.1031 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PHK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9673 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25589 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 80.090 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 70.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.60300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 12% REMARK 280 PEG6000, 20 MM CACL2, 50 MM CACODYLATE BUFFER, PH7.4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 40.04500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16140 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -110.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 182 48.02 -79.39 REMARK 500 ASP A 249 40.40 -109.41 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 267 SER A 268 -144.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 109 O REMARK 620 2 ASP A 112 OD1 82.8 REMARK 620 3 GLU A 114 O 85.5 79.3 REMARK 620 4 GLU A 119 OE1 107.7 155.4 79.4 REMARK 620 5 GLU A 119 OE2 87.5 153.1 125.0 51.4 REMARK 620 6 HOH A 444 O 167.5 90.1 103.3 82.9 94.4 REMARK 620 7 HOH A 433 O 75.2 72.2 147.2 131.5 81.1 92.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 137 OD1 REMARK 620 2 ASP A 225 OD1 128.2 REMARK 620 3 ASP A 225 OD2 81.1 50.1 REMARK 620 4 ASP A 227 OD1 80.4 70.6 73.1 REMARK 620 5 ASP A 227 OD2 91.4 100.9 123.3 50.2 REMARK 620 6 ASN A 228 OD1 154.0 75.6 124.5 101.8 71.7 REMARK 620 7 HOH A 451 O 106.9 83.6 80.2 150.9 152.9 83.8 REMARK 620 8 HOH A 447 O 81.6 150.0 151.2 125.9 79.9 76.3 83.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 152 OD1 REMARK 620 2 ASP A 154 OD1 86.6 REMARK 620 3 THR A 156 OG1 90.9 82.2 REMARK 620 4 LYS A 158 O 85.9 154.2 73.3 REMARK 620 5 GLU A 163 OE1 108.2 117.1 152.9 88.7 REMARK 620 6 GLU A 163 OE2 91.2 73.0 154.9 131.8 46.9 REMARK 620 7 HOH A 404 O 169.0 83.0 91.2 105.1 73.8 82.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 182 OD1 REMARK 620 2 SER A 186 OG 90.9 REMARK 620 3 THR A 188 O 79.3 80.1 REMARK 620 4 GLU A 193 OE1 114.4 143.7 79.7 REMARK 620 5 GLU A 193 OE2 100.3 156.6 122.0 47.2 REMARK 620 6 HOH A 450 O 169.4 78.5 98.1 74.9 89.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 109 O REMARK 620 2 ASP B 112 OD1 89.8 REMARK 620 3 GLU B 114 O 88.1 87.1 REMARK 620 4 GLU B 119 OE1 98.7 159.5 74.6 REMARK 620 5 GLU B 119 OE2 80.7 148.7 122.0 51.8 REMARK 620 6 HOH B 441 O 74.9 72.2 153.0 128.0 76.5 REMARK 620 7 HOH B 435 O 170.7 88.3 100.9 86.0 96.2 95.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 137 OD1 REMARK 620 2 ASP B 225 OD1 130.6 REMARK 620 3 ASP B 225 OD2 79.7 51.7 REMARK 620 4 ASP B 227 OD1 84.4 74.4 73.7 REMARK 620 5 ASP B 227 OD2 94.8 106.3 127.1 53.4 REMARK 620 6 ASN B 228 OD1 161.2 68.2 118.9 102.4 76.1 REMARK 620 7 HOH B 450 O 77.3 145.5 139.4 135.7 88.1 85.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 152 OD1 REMARK 620 2 ASP B 154 OD1 83.2 REMARK 620 3 THR B 156 OG1 93.3 98.0 REMARK 620 4 LYS B 158 O 87.9 168.4 75.0 REMARK 620 5 GLU B 163 OE1 107.9 103.8 151.0 86.0 REMARK 620 6 GLU B 163 OE2 91.5 57.3 154.1 130.6 47.6 REMARK 620 7 HOH B 416 O 165.3 86.3 77.9 101.0 84.6 91.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 182 OD1 REMARK 620 2 ASP B 184 OD1 78.0 REMARK 620 3 SER B 186 OG 81.3 74.7 REMARK 620 4 THR B 188 O 80.0 142.9 72.7 REMARK 620 5 GLU B 193 OE1 117.1 141.8 139.2 75.2 REMARK 620 6 GLU B 193 OE2 100.6 88.8 162.7 124.6 55.1 REMARK 620 7 HOH B 421 O 150.0 78.9 74.4 108.4 92.9 97.7 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2UB A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2UB B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PHJ RELATED DB: PDB REMARK 900 THIS STRUCTURE IS THE (Z)-3-(4-CHLOROPHENYL)-2-MERCAPTOACRYLIC ACID REMARK 900 CONTAINING VERSION OF 4PHJ DBREF 4PHK A 96 268 UNP P04632 CPNS1_HUMAN 96 268 DBREF 4PHK B 96 268 UNP P04632 CPNS1_HUMAN 96 268 SEQRES 1 A 173 GLU GLU VAL ARG GLN PHE ARG ARG LEU PHE ALA GLN LEU SEQRES 2 A 173 ALA GLY ASP ASP MET GLU VAL SER ALA THR GLU LEU MET SEQRES 3 A 173 ASN ILE LEU ASN LYS VAL VAL THR ARG HIS PRO ASP LEU SEQRES 4 A 173 LYS THR ASP GLY PHE GLY ILE ASP THR CYS ARG SER MET SEQRES 5 A 173 VAL ALA VAL MET ASP SER ASP THR THR GLY LYS LEU GLY SEQRES 6 A 173 PHE GLU GLU PHE LYS TYR LEU TRP ASN ASN ILE LYS ARG SEQRES 7 A 173 TRP GLN ALA ILE TYR LYS GLN PHE ASP THR ASP ARG SER SEQRES 8 A 173 GLY THR ILE CYS SER SER GLU LEU PRO GLY ALA PHE GLU SEQRES 9 A 173 ALA ALA GLY PHE HIS LEU ASN GLU HIS LEU TYR ASN MET SEQRES 10 A 173 ILE ILE ARG ARG TYR SER ASP GLU SER GLY ASN MET ASP SEQRES 11 A 173 PHE ASP ASN PHE ILE SER CYS LEU VAL ARG LEU ASP ALA SEQRES 12 A 173 MET PHE ARG ALA PHE LYS SER LEU ASP LYS ASP GLY THR SEQRES 13 A 173 GLY GLN ILE GLN VAL ASN ILE GLN GLU TRP LEU GLN LEU SEQRES 14 A 173 THR MET TYR SER SEQRES 1 B 173 GLU GLU VAL ARG GLN PHE ARG ARG LEU PHE ALA GLN LEU SEQRES 2 B 173 ALA GLY ASP ASP MET GLU VAL SER ALA THR GLU LEU MET SEQRES 3 B 173 ASN ILE LEU ASN LYS VAL VAL THR ARG HIS PRO ASP LEU SEQRES 4 B 173 LYS THR ASP GLY PHE GLY ILE ASP THR CYS ARG SER MET SEQRES 5 B 173 VAL ALA VAL MET ASP SER ASP THR THR GLY LYS LEU GLY SEQRES 6 B 173 PHE GLU GLU PHE LYS TYR LEU TRP ASN ASN ILE LYS ARG SEQRES 7 B 173 TRP GLN ALA ILE TYR LYS GLN PHE ASP THR ASP ARG SER SEQRES 8 B 173 GLY THR ILE CYS SER SER GLU LEU PRO GLY ALA PHE GLU SEQRES 9 B 173 ALA ALA GLY PHE HIS LEU ASN GLU HIS LEU TYR ASN MET SEQRES 10 B 173 ILE ILE ARG ARG TYR SER ASP GLU SER GLY ASN MET ASP SEQRES 11 B 173 PHE ASP ASN PHE ILE SER CYS LEU VAL ARG LEU ASP ALA SEQRES 12 B 173 MET PHE ARG ALA PHE LYS SER LEU ASP LYS ASP GLY THR SEQRES 13 B 173 GLY GLN ILE GLN VAL ASN ILE GLN GLU TRP LEU GLN LEU SEQRES 14 B 173 THR MET TYR SER HET 2UB A 301 13 HET CA A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET 2UB B 301 13 HET CA B 302 1 HET CA B 303 1 HET CA B 304 1 HET CA B 305 1 HETNAM 2UB (Z)-3-(4-CHLOROPHENYL)-2-MERCAPTOACRYLIC ACID HETNAM CA CALCIUM ION FORMUL 3 2UB 2(C9 H7 CL O2 S) FORMUL 4 CA 8(CA 2+) FORMUL 13 HOH *140(H2 O) HELIX 1 AA1 GLU A 96 GLY A 110 1 15 HELIX 2 AA2 ASP A 111 MET A 113 5 3 HELIX 3 AA3 SER A 116 ARG A 130 1 15 HELIX 4 AA4 GLY A 140 ASP A 152 1 13 HELIX 5 AA5 GLY A 160 ASP A 182 1 23 HELIX 6 AA6 GLU A 193 ALA A 201 1 9 HELIX 7 AA7 ASN A 206 SER A 218 1 13 HELIX 8 AA8 ASP A 225 ASP A 247 1 23 HELIX 9 AA9 ASN A 257 TYR A 267 1 11 HELIX 10 AB1 GLU B 97 GLY B 110 1 14 HELIX 11 AB2 ASP B 111 MET B 113 5 3 HELIX 12 AB3 SER B 116 ARG B 130 1 15 HELIX 13 AB4 GLY B 140 ASP B 152 1 13 HELIX 14 AB5 GLY B 160 ASP B 182 1 23 HELIX 15 AB6 GLU B 193 ALA B 201 1 9 HELIX 16 AB7 ASN B 206 SER B 218 1 13 HELIX 17 AB8 ASP B 225 ASP B 247 1 23 HELIX 18 AB9 ILE B 258 TYR B 267 1 10 SHEET 1 AA1 2 ILE A 189 CYS A 190 0 SHEET 2 AA1 2 ASN A 223 MET A 224 -1 O MET A 224 N ILE A 189 SHEET 1 AA2 2 GLN A 253 VAL A 256 0 SHEET 2 AA2 2 ILE B 254 ASN B 257 -1 O VAL B 256 N ILE A 254 SHEET 1 AA3 2 ILE B 189 CYS B 190 0 SHEET 2 AA3 2 ASN B 223 MET B 224 -1 O MET B 224 N ILE B 189 LINK O ALA A 109 CA CA A 302 1555 1555 2.38 LINK OD1 ASP A 112 CA CA A 302 1555 1555 2.42 LINK O GLU A 114 CA CA A 302 1555 1555 2.25 LINK OE1 GLU A 119 CA CA A 302 1555 1555 2.43 LINK OE2 GLU A 119 CA CA A 302 1555 1555 2.59 LINK OD1 ASP A 137 CA CA A 305 1555 1555 2.28 LINK OD1 ASP A 152 CA CA A 303 1555 1555 2.31 LINK OD1 ASP A 154 CA CA A 303 1555 1555 2.09 LINK OG1 THR A 156 CA CA A 303 1555 1555 2.32 LINK O LYS A 158 CA CA A 303 1555 1555 2.03 LINK OE1 GLU A 163 CA CA A 303 1555 1555 2.17 LINK OE2 GLU A 163 CA CA A 303 1555 1555 2.94 LINK OD1 ASP A 182 CA CA A 304 1555 1555 2.25 LINK OG SER A 186 CA CA A 304 1555 1555 2.65 LINK O THR A 188 CA CA A 304 1555 1555 2.46 LINK OE1 GLU A 193 CA CA A 304 1555 1555 2.95 LINK OE2 GLU A 193 CA CA A 304 1555 1555 2.44 LINK OD1 ASP A 225 CA CA A 305 1555 1555 2.72 LINK OD2 ASP A 225 CA CA A 305 1555 1555 2.52 LINK OD1 ASP A 227 CA CA A 305 1555 1555 2.53 LINK OD2 ASP A 227 CA CA A 305 1555 1555 2.53 LINK OD1 ASN A 228 CA CA A 305 1555 1555 2.63 LINK O ALA B 109 CA CA B 302 1555 1555 2.31 LINK OD1 ASP B 112 CA CA B 302 1555 1555 2.19 LINK O GLU B 114 CA CA B 302 1555 1555 2.32 LINK OE1 GLU B 119 CA CA B 302 1555 1555 2.60 LINK OE2 GLU B 119 CA CA B 302 1555 1555 2.33 LINK OD1 ASP B 137 CA CA B 305 1555 1555 2.33 LINK OD1 ASP B 152 CA CA B 303 1555 1555 2.17 LINK OD1 ASP B 154 CA CA B 303 1555 1555 2.24 LINK OG1 THR B 156 CA CA B 303 1555 1555 2.53 LINK O LYS B 158 CA CA B 303 1555 1555 2.27 LINK OE1 GLU B 163 CA CA B 303 1555 1555 2.33 LINK OE2 GLU B 163 CA CA B 303 1555 1555 2.90 LINK OD1 ASP B 182 CA CA B 304 1555 1555 2.24 LINK OD1 ASP B 184 CA CA B 304 1555 1555 2.45 LINK OG SER B 186 CA CA B 304 1555 1555 2.54 LINK O THR B 188 CA CA B 304 1555 1555 2.33 LINK OE1 GLU B 193 CA CA B 304 1555 1555 2.46 LINK OE2 GLU B 193 CA CA B 304 1555 1555 2.27 LINK OD1 ASP B 225 CA CA B 305 1555 1555 2.62 LINK OD2 ASP B 225 CA CA B 305 1555 1555 2.55 LINK OD1 ASP B 227 CA CA B 305 1555 1555 2.33 LINK OD2 ASP B 227 CA CA B 305 1555 1555 2.33 LINK OD1 ASN B 228 CA CA B 305 1555 1555 2.25 LINK CA CA A 302 O HOH A 444 1555 1555 2.17 LINK CA CA A 302 O HOH A 433 1555 1555 2.31 LINK CA CA A 303 O HOH A 404 1555 1555 2.41 LINK CA CA A 304 O HOH A 450 1555 1555 2.19 LINK CA CA A 305 O HOH A 451 1555 1555 2.38 LINK CA CA A 305 O HOH A 447 1555 1555 2.38 LINK CA CA B 302 O HOH B 441 1555 1555 2.37 LINK CA CA B 302 O HOH B 435 1555 1555 2.10 LINK CA CA B 303 O HOH B 416 1555 1555 2.44 LINK CA CA B 304 O HOH B 421 1555 1555 2.12 LINK CA CA B 305 O HOH B 450 1555 1555 2.35 SITE 1 AC1 6 VAL A 127 HIS A 131 TRP A 168 LYS A 172 SITE 2 AC1 6 GLN A 175 PHE A 226 SITE 1 AC2 6 ALA A 109 ASP A 112 GLU A 114 GLU A 119 SITE 2 AC2 6 HOH A 433 HOH A 444 SITE 1 AC3 6 ASP A 152 ASP A 154 THR A 156 LYS A 158 SITE 2 AC3 6 GLU A 163 HOH A 404 SITE 1 AC4 6 ASP A 182 ASP A 184 SER A 186 THR A 188 SITE 2 AC4 6 GLU A 193 HOH A 450 SITE 1 AC5 6 ASP A 137 ASP A 225 ASP A 227 ASN A 228 SITE 2 AC5 6 HOH A 451 HOH A 447 SITE 1 AC6 4 VAL B 127 HIS B 131 GLN B 175 HOH B 426 SITE 1 AC7 6 ALA B 109 ASP B 112 GLU B 114 GLU B 119 SITE 2 AC7 6 HOH B 441 HOH B 435 SITE 1 AC8 6 ASP B 152 ASP B 154 THR B 156 LYS B 158 SITE 2 AC8 6 GLU B 163 HOH B 416 SITE 1 AC9 6 ASP B 182 ASP B 184 SER B 186 THR B 188 SITE 2 AC9 6 GLU B 193 HOH B 421 SITE 1 AD1 5 ASP B 137 ASP B 225 ASP B 227 ASN B 228 SITE 2 AD1 5 HOH B 450 CRYST1 49.540 80.090 56.890 90.00 91.33 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020186 0.000000 0.000469 0.00000 SCALE2 0.000000 0.012486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017583 0.00000