HEADER HYDROLASE/HYDROLASE INHIBITOR 06-MAY-14 4PHL TITLE TBRPDEB1-INHIBITOR COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: CLASS 1 PHOSPHODIESTERASE PDEB1; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI; SOURCE 3 ORGANISM_TAXID: 5691; SOURCE 4 GENE: PDEB1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHODIESTERASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.S.CHOY,N.BLAND,W.PETI,R.PAGE REVDAT 6 27-SEP-23 4PHL 1 REMARK REVDAT 5 23-MAR-22 4PHL 1 REMARK LINK REVDAT 4 27-NOV-19 4PHL 1 REMARK REVDAT 3 22-NOV-17 4PHL 1 REMARK REVDAT 2 06-SEP-17 4PHL 1 SOURCE JRNL REMARK REVDAT 1 20-MAY-15 4PHL 0 JRNL AUTH N.BLAND,M.S.CHOY,M.POLLASTRI,R.CAMPBELL,W.PETI,R.PAGE JRNL TITL TBRPDEB1-INHIBITOR COMPLEX JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 59394 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.160 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3003 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.9662 - 5.3687 1.00 2829 150 0.1427 0.1540 REMARK 3 2 5.3687 - 4.2649 1.00 2755 166 0.1330 0.1565 REMARK 3 3 4.2649 - 3.7268 1.00 2818 127 0.1447 0.1702 REMARK 3 4 3.7268 - 3.3865 1.00 2758 154 0.1483 0.1771 REMARK 3 5 3.3865 - 3.1440 1.00 2784 146 0.1755 0.2462 REMARK 3 6 3.1440 - 2.9588 1.00 2769 148 0.1821 0.1965 REMARK 3 7 2.9588 - 2.8107 1.00 2758 154 0.1902 0.2159 REMARK 3 8 2.8107 - 2.6884 1.00 2790 138 0.1683 0.2269 REMARK 3 9 2.6884 - 2.5850 1.00 2768 134 0.1706 0.2055 REMARK 3 10 2.5850 - 2.4958 1.00 2743 169 0.1705 0.1973 REMARK 3 11 2.4958 - 2.4178 1.00 2792 130 0.1688 0.1769 REMARK 3 12 2.4178 - 2.3487 1.00 2768 135 0.1675 0.2077 REMARK 3 13 2.3487 - 2.2869 1.00 2788 155 0.1637 0.2245 REMARK 3 14 2.2869 - 2.2312 1.00 2735 151 0.1622 0.1814 REMARK 3 15 2.2312 - 2.1804 1.00 2754 149 0.1636 0.2311 REMARK 3 16 2.1804 - 2.1341 1.00 2757 162 0.1625 0.2134 REMARK 3 17 2.1341 - 2.0914 1.00 2763 145 0.1609 0.2065 REMARK 3 18 2.0914 - 2.0519 0.97 2676 133 0.1694 0.2180 REMARK 3 19 2.0519 - 2.0153 0.88 2454 126 0.1740 0.1994 REMARK 3 20 2.0153 - 1.9811 0.80 2189 114 0.1870 0.2525 REMARK 3 21 1.9811 - 1.9500 0.71 1943 117 0.2065 0.2521 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.020 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 5427 REMARK 3 ANGLE : 1.137 7324 REMARK 3 CHIRALITY : 0.049 827 REMARK 3 PLANARITY : 0.006 946 REMARK 3 DIHEDRAL : 13.783 1974 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 587 THROUGH 916 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.9294 37.2117 31.6512 REMARK 3 T TENSOR REMARK 3 T11: 0.1638 T22: 0.2022 REMARK 3 T33: 0.1531 T12: -0.0114 REMARK 3 T13: -0.0113 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.7052 L22: 1.0220 REMARK 3 L33: 1.7731 L12: -0.2607 REMARK 3 L13: -0.4104 L23: 0.7908 REMARK 3 S TENSOR REMARK 3 S11: -0.0542 S12: 0.0258 S13: -0.0195 REMARK 3 S21: -0.0227 S22: 0.0648 S23: 0.0655 REMARK 3 S31: 0.0841 S32: 0.0633 S33: -0.0004 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 587 THROUGH 918 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.0003 61.4014 63.5174 REMARK 3 T TENSOR REMARK 3 T11: 0.1474 T22: 0.1488 REMARK 3 T33: 0.1769 T12: 0.0037 REMARK 3 T13: 0.0072 T23: 0.0236 REMARK 3 L TENSOR REMARK 3 L11: 0.6718 L22: 1.4691 REMARK 3 L33: 1.0494 L12: -0.2731 REMARK 3 L13: -0.0836 L23: -0.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.0250 S12: 0.0008 S13: -0.0250 REMARK 3 S21: 0.1105 S22: -0.0058 S23: 0.1207 REMARK 3 S31: -0.0492 S32: -0.1197 S33: -0.0022 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PHL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201209. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59427 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.03400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000 REMARK 200 STARTING MODEL: PDB ENTRY 4I15 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.09 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 0.2 M GUANIDINE, 0.4 M REMARK 280 SODIUM FORMATE AND 16% W/V PEG 3350, PH 6.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 55.09750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.63250 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 55.09750 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 59.63250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1127 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1107 LIES ON A SPECIAL POSITION. REMARK 375 HOH B1141 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 572 REMARK 465 MET A 573 REMARK 465 ALA A 574 REMARK 465 SER A 575 REMARK 465 LYS A 576 REMARK 465 ASN A 577 REMARK 465 VAL A 578 REMARK 465 PRO A 579 REMARK 465 SER A 580 REMARK 465 ARG A 581 REMARK 465 ALA A 582 REMARK 465 VAL A 583 REMARK 465 LYS A 584 REMARK 465 ARG A 585 REMARK 465 VAL A 586 REMARK 465 THR A 917 REMARK 465 ARG A 918 REMARK 465 HIS B 572 REMARK 465 MET B 573 REMARK 465 ALA B 574 REMARK 465 SER B 575 REMARK 465 LYS B 576 REMARK 465 ASN B 577 REMARK 465 VAL B 578 REMARK 465 PRO B 579 REMARK 465 SER B 580 REMARK 465 ARG B 581 REMARK 465 ALA B 582 REMARK 465 VAL B 583 REMARK 465 LYS B 584 REMARK 465 ARG B 585 REMARK 465 VAL B 586 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 591 CG CD CE NZ REMARK 470 LYS A 623 CE NZ REMARK 470 GLU A 765 CD OE1 OE2 REMARK 470 LYS A 787 CD CE NZ REMARK 470 ASN A 867 CG OD1 ND2 REMARK 470 LYS A 872 CG CD CE NZ REMARK 470 LYS A 905 CE NZ REMARK 470 GLU B 765 CD OE1 OE2 REMARK 470 GLN B 802 CD OE1 NE2 REMARK 470 LYS B 866 CG CD CE NZ REMARK 470 ASN B 867 CG OD1 ND2 REMARK 470 GLU B 869 CG CD OE1 OE2 REMARK 470 ARG B 918 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 1316 O HOH B 1328 2.16 REMARK 500 OD2 ASP B 849 O HOH B 1344 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 893 CB CYS B 893 SG -0.121 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 604 8.18 81.67 REMARK 500 TYR A 668 -55.48 -124.78 REMARK 500 ASP A 801 72.93 -152.06 REMARK 500 ASP A 805 85.76 -155.61 REMARK 500 ASN A 867 63.23 60.57 REMARK 500 MET A 868 -151.14 66.54 REMARK 500 VAL A 881 -63.15 -123.62 REMARK 500 CYS A 893 -46.30 -161.66 REMARK 500 LEU A 894 58.84 -100.35 REMARK 500 LEU A 915 27.80 -71.00 REMARK 500 TYR B 668 -56.36 -122.50 REMARK 500 VAL B 881 -61.44 -122.81 REMARK 500 CYS B 893 -44.03 -169.77 REMARK 500 LEU B 894 59.58 -100.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 673 NE2 REMARK 620 2 HIS A 709 NE2 107.1 REMARK 620 3 ASP A 710 OD2 92.0 86.7 REMARK 620 4 ASP A 822 OD1 91.7 93.3 176.1 REMARK 620 5 HOH A1143 O 90.5 160.3 101.8 77.0 REMARK 620 6 HOH A1259 O 153.0 99.7 86.3 89.9 63.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 710 OD1 REMARK 620 2 HOH A1155 O 170.5 REMARK 620 3 HOH A1164 O 93.1 80.2 REMARK 620 4 HOH A1189 O 91.8 94.8 88.4 REMARK 620 5 HOH A1194 O 85.3 87.7 88.5 175.6 REMARK 620 6 HOH A1259 O 82.7 105.5 164.1 76.4 106.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 673 NE2 REMARK 620 2 HIS B 709 NE2 109.1 REMARK 620 3 ASP B 710 OD2 91.0 85.4 REMARK 620 4 ASP B 822 OD1 91.8 92.0 176.7 REMARK 620 5 HOH B1208 O 86.1 163.7 100.7 81.2 REMARK 620 6 HOH B1289 O 147.1 103.1 85.2 93.4 62.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B1002 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 710 OD1 REMARK 620 2 HOH B1156 O 85.6 REMARK 620 3 HOH B1184 O 161.0 82.6 REMARK 620 4 HOH B1253 O 99.5 84.8 94.3 REMARK 620 5 HOH B1289 O 81.0 158.0 114.4 80.3 REMARK 620 6 HOH B1334 O 87.6 88.7 77.2 170.0 108.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PIL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GAI A 1004 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 1005 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PIL B 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EOH B 1004 DBREF 4PHL A 576 918 UNP Q8WQX9 Q8WQX9_9TRYP 576 918 DBREF 4PHL B 576 918 UNP Q8WQX9 Q8WQX9_9TRYP 576 918 SEQADV 4PHL HIS A 572 UNP Q8WQX9 EXPRESSION TAG SEQADV 4PHL MET A 573 UNP Q8WQX9 EXPRESSION TAG SEQADV 4PHL ALA A 574 UNP Q8WQX9 EXPRESSION TAG SEQADV 4PHL SER A 575 UNP Q8WQX9 EXPRESSION TAG SEQADV 4PHL GLY A 762 UNP Q8WQX9 ASP 762 CONFLICT SEQADV 4PHL HIS B 572 UNP Q8WQX9 EXPRESSION TAG SEQADV 4PHL MET B 573 UNP Q8WQX9 EXPRESSION TAG SEQADV 4PHL ALA B 574 UNP Q8WQX9 EXPRESSION TAG SEQADV 4PHL SER B 575 UNP Q8WQX9 EXPRESSION TAG SEQADV 4PHL GLY B 762 UNP Q8WQX9 ASP 762 CONFLICT SEQRES 1 A 347 HIS MET ALA SER LYS ASN VAL PRO SER ARG ALA VAL LYS SEQRES 2 A 347 ARG VAL THR ALA ILE THR LYS VAL GLU ARG GLU ALA VAL SEQRES 3 A 347 LEU VAL CYS GLU LEU PRO SER PHE ASP VAL THR ASP VAL SEQRES 4 A 347 GLU PHE ASP LEU PHE ARG ALA ARG GLU SER THR ASP LYS SEQRES 5 A 347 PRO LEU ASP VAL ALA ALA ALA ILE ALA TYR ARG LEU LEU SEQRES 6 A 347 LEU GLY SER GLY LEU PRO GLN LYS PHE GLY CYS SER ASP SEQRES 7 A 347 GLU VAL LEU LEU ASN PHE ILE LEU GLN CYS ARG LYS LYS SEQRES 8 A 347 TYR ARG ASN VAL PRO TYR HIS ASN PHE TYR HIS VAL VAL SEQRES 9 A 347 ASP VAL CYS GLN THR ILE HIS THR PHE LEU TYR ARG GLY SEQRES 10 A 347 ASN VAL TYR GLU LYS LEU THR GLU LEU GLU CYS PHE VAL SEQRES 11 A 347 LEU LEU ILE THR ALA LEU VAL HIS ASP LEU ASP HIS MET SEQRES 12 A 347 GLY LEU ASN ASN SER PHE TYR LEU LYS THR GLU SER PRO SEQRES 13 A 347 LEU GLY ILE LEU SER SER ALA SER GLY ASN THR SER VAL SEQRES 14 A 347 LEU GLU VAL HIS HIS CYS ASN LEU ALA VAL GLU ILE LEU SEQRES 15 A 347 SER ASP PRO GLU SER ASP VAL PHE GLY GLY LEU GLU GLY SEQRES 16 A 347 ALA GLU ARG THR LEU ALA PHE ARG SER MET ILE ASP CYS SEQRES 17 A 347 VAL LEU ALA THR ASP MET ALA LYS HIS GLY SER ALA LEU SEQRES 18 A 347 GLU ALA PHE LEU ALA SER ALA ALA ASP GLN SER SER ASP SEQRES 19 A 347 GLU ALA ALA PHE HIS ARG MET THR MET GLU ILE ILE LEU SEQRES 20 A 347 LYS ALA GLY ASP ILE SER ASN VAL THR LYS PRO PHE ASP SEQRES 21 A 347 ILE SER ARG GLN TRP ALA MET ALA VAL THR GLU GLU PHE SEQRES 22 A 347 TYR ARG GLN GLY ASP MET GLU LYS GLU ARG GLY VAL GLU SEQRES 23 A 347 VAL LEU PRO MET PHE ASP ARG SER LYS ASN MET GLU LEU SEQRES 24 A 347 ALA LYS GLY GLN ILE GLY PHE ILE ASP PHE VAL ALA ALA SEQRES 25 A 347 PRO PHE PHE GLN LYS ILE VAL ASP ALA CYS LEU GLN GLY SEQRES 26 A 347 MET GLN TRP THR VAL ASP ARG ILE LYS SER ASN ARG ALA SEQRES 27 A 347 GLN TRP GLU ARG VAL LEU GLU THR ARG SEQRES 1 B 347 HIS MET ALA SER LYS ASN VAL PRO SER ARG ALA VAL LYS SEQRES 2 B 347 ARG VAL THR ALA ILE THR LYS VAL GLU ARG GLU ALA VAL SEQRES 3 B 347 LEU VAL CYS GLU LEU PRO SER PHE ASP VAL THR ASP VAL SEQRES 4 B 347 GLU PHE ASP LEU PHE ARG ALA ARG GLU SER THR ASP LYS SEQRES 5 B 347 PRO LEU ASP VAL ALA ALA ALA ILE ALA TYR ARG LEU LEU SEQRES 6 B 347 LEU GLY SER GLY LEU PRO GLN LYS PHE GLY CYS SER ASP SEQRES 7 B 347 GLU VAL LEU LEU ASN PHE ILE LEU GLN CYS ARG LYS LYS SEQRES 8 B 347 TYR ARG ASN VAL PRO TYR HIS ASN PHE TYR HIS VAL VAL SEQRES 9 B 347 ASP VAL CYS GLN THR ILE HIS THR PHE LEU TYR ARG GLY SEQRES 10 B 347 ASN VAL TYR GLU LYS LEU THR GLU LEU GLU CYS PHE VAL SEQRES 11 B 347 LEU LEU ILE THR ALA LEU VAL HIS ASP LEU ASP HIS MET SEQRES 12 B 347 GLY LEU ASN ASN SER PHE TYR LEU LYS THR GLU SER PRO SEQRES 13 B 347 LEU GLY ILE LEU SER SER ALA SER GLY ASN THR SER VAL SEQRES 14 B 347 LEU GLU VAL HIS HIS CYS ASN LEU ALA VAL GLU ILE LEU SEQRES 15 B 347 SER ASP PRO GLU SER ASP VAL PHE GLY GLY LEU GLU GLY SEQRES 16 B 347 ALA GLU ARG THR LEU ALA PHE ARG SER MET ILE ASP CYS SEQRES 17 B 347 VAL LEU ALA THR ASP MET ALA LYS HIS GLY SER ALA LEU SEQRES 18 B 347 GLU ALA PHE LEU ALA SER ALA ALA ASP GLN SER SER ASP SEQRES 19 B 347 GLU ALA ALA PHE HIS ARG MET THR MET GLU ILE ILE LEU SEQRES 20 B 347 LYS ALA GLY ASP ILE SER ASN VAL THR LYS PRO PHE ASP SEQRES 21 B 347 ILE SER ARG GLN TRP ALA MET ALA VAL THR GLU GLU PHE SEQRES 22 B 347 TYR ARG GLN GLY ASP MET GLU LYS GLU ARG GLY VAL GLU SEQRES 23 B 347 VAL LEU PRO MET PHE ASP ARG SER LYS ASN MET GLU LEU SEQRES 24 B 347 ALA LYS GLY GLN ILE GLY PHE ILE ASP PHE VAL ALA ALA SEQRES 25 B 347 PRO PHE PHE GLN LYS ILE VAL ASP ALA CYS LEU GLN GLY SEQRES 26 B 347 MET GLN TRP THR VAL ASP ARG ILE LYS SER ASN ARG ALA SEQRES 27 B 347 GLN TRP GLU ARG VAL LEU GLU THR ARG HET ZN A1001 1 HET MG A1002 1 HET PIL A1003 25 HET GAI A1004 4 HET GOL A1005 6 HET ZN B1001 1 HET MG B1002 1 HET PIL B1003 25 HET EOH B1004 3 HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM PIL 3-(CYCLOPENTYLOXY)-N-(3,5-DICHLOROPYRIDIN-4-YL)-4- HETNAM 2 PIL METHOXYBENZAMIDE HETNAM GAI GUANIDINE HETNAM GOL GLYCEROL HETNAM EOH ETHANOL HETSYN PIL PICLAMILAST HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MG 2(MG 2+) FORMUL 5 PIL 2(C18 H18 CL2 N2 O3) FORMUL 6 GAI C H5 N3 FORMUL 7 GOL C3 H8 O3 FORMUL 11 EOH C2 H6 O FORMUL 12 HOH *457(H2 O) HELIX 1 AA1 THR A 590 VAL A 599 1 10 HELIX 2 AA2 ASP A 613 SER A 620 1 8 HELIX 3 AA3 LYS A 623 SER A 639 1 17 HELIX 4 AA4 GLY A 640 PHE A 645 1 6 HELIX 5 AA5 SER A 648 LYS A 662 1 15 HELIX 6 AA6 ASN A 670 ARG A 687 1 18 HELIX 7 AA7 ASN A 689 LEU A 694 5 6 HELIX 8 AA8 THR A 695 HIS A 709 1 15 HELIX 9 AA9 ASN A 717 THR A 724 1 8 HELIX 10 AB1 SER A 726 SER A 735 1 10 HELIX 11 AB2 SER A 739 SER A 754 1 16 HELIX 12 AB3 ASP A 755 ASP A 759 5 5 HELIX 13 AB4 GLU A 765 ALA A 782 1 18 HELIX 14 AB5 THR A 783 ALA A 786 5 4 HELIX 15 AB6 LYS A 787 ASP A 801 1 15 HELIX 16 AB7 ASP A 805 ILE A 823 1 19 HELIX 17 AB8 SER A 824 LYS A 828 5 5 HELIX 18 AB9 PRO A 829 GLY A 855 1 27 HELIX 19 AC1 LEU A 859 ASN A 867 5 9 HELIX 20 AC2 GLU A 869 VAL A 881 1 13 HELIX 21 AC3 VAL A 881 CYS A 893 1 13 HELIX 22 AC4 LEU A 894 GLY A 896 5 3 HELIX 23 AC5 MET A 897 LEU A 915 1 19 HELIX 24 AC6 THR B 590 VAL B 599 1 10 HELIX 25 AC7 ASP B 613 SER B 620 1 8 HELIX 26 AC8 LYS B 623 SER B 639 1 17 HELIX 27 AC9 GLY B 640 PHE B 645 1 6 HELIX 28 AD1 SER B 648 LYS B 662 1 15 HELIX 29 AD2 ASN B 670 ARG B 687 1 18 HELIX 30 AD3 ASN B 689 LEU B 694 5 6 HELIX 31 AD4 THR B 695 HIS B 709 1 15 HELIX 32 AD5 ASN B 717 THR B 724 1 8 HELIX 33 AD6 SER B 726 SER B 735 1 10 HELIX 34 AD7 SER B 739 SER B 754 1 16 HELIX 35 AD8 ASP B 755 ASP B 759 5 5 HELIX 36 AD9 GLU B 765 ALA B 782 1 18 HELIX 37 AE1 THR B 783 ALA B 786 5 4 HELIX 38 AE2 LYS B 787 ASP B 801 1 15 HELIX 39 AE3 ASP B 805 ILE B 823 1 19 HELIX 40 AE4 SER B 824 LYS B 828 5 5 HELIX 41 AE5 PRO B 829 GLY B 855 1 27 HELIX 42 AE6 LEU B 859 ASP B 863 5 5 HELIX 43 AE7 GLU B 869 VAL B 881 1 13 HELIX 44 AE8 VAL B 881 CYS B 893 1 13 HELIX 45 AE9 LEU B 894 GLY B 896 5 3 HELIX 46 AF1 MET B 897 THR B 917 1 21 LINK NE2 HIS A 673 ZN ZN A1001 1555 1555 2.01 LINK NE2 HIS A 709 ZN ZN A1001 1555 1555 2.15 LINK OD2 ASP A 710 ZN ZN A1001 1555 1555 2.15 LINK OD1 ASP A 710 MG MG A1002 1555 1555 2.13 LINK OD1 ASP A 822 ZN ZN A1001 1555 1555 2.13 LINK ZN ZN A1001 O HOH A1143 1555 1555 2.48 LINK ZN ZN A1001 O HOH A1259 1555 1555 2.09 LINK MG MG A1002 O HOH A1155 1555 1555 2.15 LINK MG MG A1002 O HOH A1164 1555 1555 2.13 LINK MG MG A1002 O HOH A1189 1555 1555 2.13 LINK MG MG A1002 O HOH A1194 1555 1555 2.11 LINK MG MG A1002 O HOH A1259 1555 1555 2.17 LINK NE2 HIS B 673 ZN ZN B1001 1555 1555 2.08 LINK NE2 HIS B 709 ZN ZN B1001 1555 1555 2.11 LINK OD2 ASP B 710 ZN ZN B1001 1555 1555 2.17 LINK OD1 ASP B 710 MG MG B1002 1555 1555 2.18 LINK OD1 ASP B 822 ZN ZN B1001 1555 1555 2.10 LINK ZN ZN B1001 O HOH B1208 1555 1555 2.49 LINK ZN ZN B1001 O HOH B1289 1555 1555 2.05 LINK MG MG B1002 O HOH B1156 1555 1555 2.12 LINK MG MG B1002 O HOH B1184 1555 1555 2.15 LINK MG MG B1002 O HOH B1253 1555 1555 2.12 LINK MG MG B1002 O HOH B1289 1555 1555 2.20 LINK MG MG B1002 O HOH B1334 1555 1555 2.09 CISPEP 1 MET A 868 GLU A 869 0 -7.97 SITE 1 AC1 6 HIS A 673 HIS A 709 ASP A 710 ASP A 822 SITE 2 AC1 6 HOH A1143 HOH A1259 SITE 1 AC2 6 ASP A 710 HOH A1155 HOH A1164 HOH A1189 SITE 2 AC2 6 HOH A1194 HOH A1259 SITE 1 AC3 15 MET A 785 ASP A 822 ILE A 823 ASN A 825 SITE 2 AC3 15 ALA A 837 VAL A 840 PHE A 844 GLY A 873 SITE 3 AC3 15 GLN A 874 GAI A1004 HOH A1179 HOH A1250 SITE 4 AC3 15 HOH A1284 HOH A1288 HOH A1304 SITE 1 AC4 5 ASN A 717 PIL A1003 HOH A1195 HOH A1202 SITE 2 AC4 5 HOH A1304 SITE 1 AC5 8 TYR A 691 LEU A 694 HOH A1139 HOH A1141 SITE 2 AC5 8 HOH A1231 TYR B 691 LEU B 694 GLU B 696 SITE 1 AC6 6 HIS B 673 HIS B 709 ASP B 710 ASP B 822 SITE 2 AC6 6 HOH B1208 HOH B1289 SITE 1 AC7 6 ASP B 710 HOH B1156 HOH B1184 HOH B1253 SITE 2 AC7 6 HOH B1289 HOH B1334 SITE 1 AC8 12 MET B 785 ASP B 822 ILE B 823 ASN B 825 SITE 2 AC8 12 ALA B 837 VAL B 840 PHE B 844 GLN B 874 SITE 3 AC8 12 HOH B1210 HOH B1230 HOH B1273 HOH B1275 SITE 1 AC9 5 LYS B 723 GLN B 847 GLU B 851 LEU B 859 SITE 2 AC9 5 PHE B 862 CRYST1 110.195 119.265 68.144 90.00 106.97 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009075 0.000000 0.002769 0.00000 SCALE2 0.000000 0.008385 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015343 0.00000