HEADER HYDROLASE 06-MAY-14 4PHN TITLE THE STRUCTURAL BASIS OF DIFFERENTIAL INHIBITION OF HUMAN CALPAIN BY TITLE 2 INDOLE AND PHENYL ALPHA-MERCAPTOACRYLIC ACIDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CALPAIN SMALL SUBUNIT 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PEF(S) DOMAIN VI, RESIDUES 94-266; COMPND 5 SYNONYM: CSS1,CALCIUM-ACTIVATED NEUTRAL PROTEINASE SMALL SUBUNIT,CANP COMPND 6 SMALL SUBUNIT,CALCIUM-DEPENDENT PROTEASE SMALL SUBUNIT,CDPS,CALCIUM- COMPND 7 DEPENDENT PROTEASE SMALL SUBUNIT 1,CALPAIN REGULATORY SUBUNIT; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: CAPNS1, CAPN4; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CALCIUM BINDING, PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.K.ALLEMANN,P.J.RIZKALLAH,S.E.ADAMS,D.J.MILLER,M.B.HALLETT REVDAT 6 20-DEC-23 4PHN 1 LINK REVDAT 5 13-SEP-17 4PHN 1 REMARK LINK SITE ATOM REVDAT 4 04-FEB-15 4PHN 1 REMARK REVDAT 3 10-DEC-14 4PHN 1 REVDAT 2 10-SEP-14 4PHN 1 JRNL REVDAT 1 13-AUG-14 4PHN 0 JRNL AUTH S.E.ADAMS,P.J.RIZKALLAH,D.J.MILLER,E.J.ROBINSON,M.B.HALLETT, JRNL AUTH 2 R.K.ALLEMANN JRNL TITL THE STRUCTURAL BASIS OF DIFFERENTIAL INHIBITION OF HUMAN JRNL TITL 2 CALPAIN BY INDOLE AND PHENYL ALPHA-MERCAPTOACRYLIC ACIDS. JRNL REF J.STRUCT.BIOL. V. 187 236 2014 JRNL REFN ESSN 1095-8657 JRNL PMID 25086406 JRNL DOI 10.1016/J.JSB.2014.07.004 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.05 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 33708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1777 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2535 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.93 REMARK 3 BIN R VALUE (WORKING SET) : 0.3020 REMARK 3 BIN FREE R VALUE SET COUNT : 137 REMARK 3 BIN FREE R VALUE : 0.3610 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2790 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.92 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.06000 REMARK 3 B22 (A**2) : -0.68000 REMARK 3 B33 (A**2) : 0.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.70000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.127 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2862 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2670 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3852 ; 2.008 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6128 ; 1.085 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 348 ; 5.360 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;32.239 ;24.267 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 516 ;16.637 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;16.484 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 408 ; 0.156 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3292 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 708 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1392 ; 1.683 ; 1.701 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1391 ; 1.684 ; 1.701 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1740 ; 2.495 ; 2.540 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1741 ; 2.494 ; 2.540 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1470 ; 2.325 ; 1.959 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1469 ; 2.319 ; 1.959 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2112 ; 3.533 ; 2.836 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3704 ; 6.381 ;15.017 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 3570 ; 6.319 ;14.370 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 94 A 266 REMARK 3 ORIGIN FOR THE GROUP (A): -19.2049 -7.2706 -12.4410 REMARK 3 T TENSOR REMARK 3 T11: 0.0075 T22: 0.0355 REMARK 3 T33: 0.0760 T12: -0.0066 REMARK 3 T13: 0.0078 T23: 0.0253 REMARK 3 L TENSOR REMARK 3 L11: 2.9909 L22: 1.1050 REMARK 3 L33: 1.4989 L12: -0.1998 REMARK 3 L13: 0.6838 L23: -0.0586 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: -0.1222 S13: 0.1436 REMARK 3 S21: 0.0105 S22: 0.0415 S23: 0.1333 REMARK 3 S31: -0.0478 S32: -0.0804 S33: -0.0641 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 94 B 266 REMARK 3 ORIGIN FOR THE GROUP (A): -3.9272 -25.4895 -11.0183 REMARK 3 T TENSOR REMARK 3 T11: 0.0891 T22: 0.0909 REMARK 3 T33: 0.0458 T12: 0.0122 REMARK 3 T13: 0.0121 T23: -0.0152 REMARK 3 L TENSOR REMARK 3 L11: 1.6703 L22: 1.5628 REMARK 3 L33: 2.4842 L12: 0.0359 REMARK 3 L13: 0.9401 L23: -0.0483 REMARK 3 S TENSOR REMARK 3 S11: 0.0682 S12: -0.0534 S13: -0.0864 REMARK 3 S21: 0.1388 S22: -0.0754 S23: -0.0161 REMARK 3 S31: 0.3647 S32: -0.0927 S33: 0.0072 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 301 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): -20.3906 -9.7718 -6.5480 REMARK 3 T TENSOR REMARK 3 T11: 0.1171 T22: 0.1073 REMARK 3 T33: 0.1390 T12: -0.0637 REMARK 3 T13: -0.0112 T23: -0.0104 REMARK 3 L TENSOR REMARK 3 L11: 1.9335 L22: 2.4640 REMARK 3 L33: 3.2257 L12: -1.0737 REMARK 3 L13: -0.9051 L23: -1.7850 REMARK 3 S TENSOR REMARK 3 S11: 0.3005 S12: -0.3656 S13: -0.2182 REMARK 3 S21: -0.0985 S22: -0.0097 S23: 0.4419 REMARK 3 S31: -0.2224 S32: 0.4322 S33: -0.2908 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 301 B 304 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2188 -28.0603 -8.4507 REMARK 3 T TENSOR REMARK 3 T11: 0.1489 T22: 0.1639 REMARK 3 T33: 0.0787 T12: -0.0090 REMARK 3 T13: -0.0009 T23: -0.0688 REMARK 3 L TENSOR REMARK 3 L11: 1.0064 L22: 0.7155 REMARK 3 L33: 0.3124 L12: -0.1569 REMARK 3 L13: -0.4161 L23: -0.2464 REMARK 3 S TENSOR REMARK 3 S11: -0.1416 S12: 0.0222 S13: 0.0514 REMARK 3 S21: -0.0234 S22: 0.1319 S23: -0.0723 REMARK 3 S31: 0.0807 S32: -0.0753 S33: 0.0097 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PHN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 07-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201420. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-MAR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35505 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.790 REMARK 200 RESOLUTION RANGE LOW (A) : 39.050 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.79 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.84 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.62200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1ALV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 12% REMARK 280 PEG6000, 20 MM CACL2, 50 MM CACODYLATE BUFFER, PH7.4, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.28000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4990 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -121.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 490 O HOH B 510 2.10 REMARK 500 OE1 GLN B 178 O HOH B 401 2.13 REMARK 500 NZ LYS A 171 O HOH A 401 2.13 REMARK 500 O HOH A 407 O HOH B 465 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 100 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 214 CB - CG - CD ANGL. DEV. = 23.5 DEGREES REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG A 214 NE - CZ - NH2 ANGL. DEV. = -6.9 DEGREES REMARK 500 ARG B 128 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 183 NE - CZ - NH2 ANGL. DEV. = 3.0 DEGREES REMARK 500 ASP B 217 CB - CG - OD1 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 203 -145.40 -99.62 REMARK 500 LYS A 246 -75.58 -59.46 REMARK 500 ASP A 247 10.65 -50.99 REMARK 500 MET B 111 19.26 56.65 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 107 O REMARK 620 2 ASP A 110 OD1 83.9 REMARK 620 3 GLU A 112 O 86.4 77.0 REMARK 620 4 GLU A 117 OE1 102.3 151.0 75.2 REMARK 620 5 GLU A 117 OE2 84.9 157.9 121.1 50.6 REMARK 620 6 HOH A 418 O 170.7 86.9 93.4 86.6 103.1 REMARK 620 7 HOH A 491 O 83.1 76.4 152.3 132.1 83.4 92.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 135 OD1 REMARK 620 2 ASP A 223 OD1 127.7 REMARK 620 3 ASP A 223 OD2 78.1 52.0 REMARK 620 4 ASP A 225 OD1 79.8 73.2 74.0 REMARK 620 5 ASP A 225 OD2 87.7 106.4 123.9 50.0 REMARK 620 6 ASN A 226 OD1 152.6 78.5 129.3 104.2 75.5 REMARK 620 7 HOH A 488 O 100.1 83.2 75.7 149.0 160.3 90.1 REMARK 620 8 HOH B 417 O 75.9 152.9 139.4 129.8 85.6 81.3 78.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 150 OD1 REMARK 620 2 ASP A 152 OD1 88.6 REMARK 620 3 THR A 154 OG1 88.6 86.3 REMARK 620 4 LYS A 156 O 86.5 164.4 78.9 REMARK 620 5 GLU A 161 OE1 107.0 115.6 152.9 80.0 REMARK 620 6 GLU A 161 OE2 93.0 71.1 157.2 123.9 46.6 REMARK 620 7 HOH A 440 O 169.5 86.2 82.0 96.2 83.5 93.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 180 OD1 REMARK 620 2 ASP A 182 OD1 78.3 REMARK 620 3 SER A 184 OG 81.4 82.1 REMARK 620 4 THR A 186 O 81.9 149.1 71.6 REMARK 620 5 GLU A 191 OE1 114.5 130.1 145.1 79.9 REMARK 620 6 GLU A 191 OE2 100.9 80.8 161.8 126.5 50.0 REMARK 620 7 HOH A 498 O 160.2 86.9 83.6 105.5 85.1 89.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 107 O REMARK 620 2 ASP B 110 OD1 92.7 REMARK 620 3 GLU B 112 O 82.0 78.9 REMARK 620 4 GLU B 117 OE1 99.8 152.0 78.2 REMARK 620 5 GLU B 117 OE2 88.2 156.0 124.9 50.3 REMARK 620 6 HOH B 414 O 175.2 83.9 100.7 84.7 93.4 REMARK 620 7 HOH B 469 O 83.5 75.1 149.5 130.9 81.1 92.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 135 OD1 REMARK 620 2 ASP B 223 OD1 128.0 REMARK 620 3 ASP B 223 OD2 78.8 51.1 REMARK 620 4 ASP B 225 OD1 81.5 71.7 72.4 REMARK 620 5 ASP B 225 OD2 89.1 106.4 124.1 51.8 REMARK 620 6 ASN B 226 OD1 155.3 76.5 125.8 106.6 78.8 REMARK 620 7 HOH B 457 O 76.2 150.6 138.3 134.5 88.4 82.0 REMARK 620 8 HOH B 499 O 102.4 81.3 76.9 147.6 158.2 83.4 76.6 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 150 OD1 REMARK 620 2 ASP B 152 OD1 82.7 REMARK 620 3 THR B 154 OG1 86.5 83.1 REMARK 620 4 LYS B 156 O 89.0 155.0 72.9 REMARK 620 5 GLU B 161 OE1 111.4 123.6 148.4 81.3 REMARK 620 6 GLU B 161 OE2 96.0 76.4 158.8 128.1 48.8 REMARK 620 7 HOH B 409 O 160.4 80.2 82.0 102.6 86.3 89.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 180 OD1 REMARK 620 2 ASP B 182 OD1 82.0 REMARK 620 3 SER B 184 OG 84.9 80.5 REMARK 620 4 THR B 186 O 78.0 150.0 75.6 REMARK 620 5 GLU B 191 OE1 104.6 125.9 152.5 81.1 REMARK 620 6 GLU B 191 OE2 98.3 77.2 156.8 127.6 48.8 REMARK 620 7 HOH B 505 O 170.7 98.8 86.1 97.5 82.5 90.9 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PHJ RELATED DB: PDB REMARK 900 THIS IS THE PORCINE SEQUENCE STRUCTURE, DETERMINED DURING THE REMARK 900 COURSE OF THE WORK ON THE HUMAN SEQUENCE. IT GOES TO HIGHER REMARK 900 RESOLUTION THAN THE PREVIOUSLY REPORTED 1ALV. DBREF 4PHN A 94 266 UNP P04574 CPNS1_PIG 94 266 DBREF 4PHN B 94 266 UNP P04574 CPNS1_PIG 94 266 SEQRES 1 A 173 GLU GLU VAL ARG GLN PHE ARG ARG LEU PHE ALA GLN LEU SEQRES 2 A 173 ALA GLY ASP ASP MET GLU VAL SER ALA THR GLU LEU MET SEQRES 3 A 173 ASN ILE LEU ASN LYS VAL VAL THR ARG HIS PRO ASP LEU SEQRES 4 A 173 LYS THR ASP GLY PHE GLY ILE ASP THR CYS ARG SER MET SEQRES 5 A 173 VAL ALA VAL MET ASP SER ASP THR THR GLY LYS LEU GLY SEQRES 6 A 173 PHE GLU GLU PHE LYS TYR LEU TRP ASN ASN ILE LYS LYS SEQRES 7 A 173 TRP GLN ALA ILE TYR LYS GLN PHE ASP VAL ASP ARG SER SEQRES 8 A 173 GLY THR ILE GLY SER SER GLU LEU PRO GLY ALA PHE GLU SEQRES 9 A 173 ALA ALA GLY PHE HIS LEU ASN GLU HIS LEU TYR SER MET SEQRES 10 A 173 ILE ILE ARG ARG TYR SER ASP GLU GLY GLY ASN MET ASP SEQRES 11 A 173 PHE ASP ASN PHE ILE SER CYS LEU VAL ARG LEU ASP ALA SEQRES 12 A 173 MET PHE ARG ALA PHE LYS SER LEU ASP LYS ASP GLY THR SEQRES 13 A 173 GLY GLN ILE GLN VAL ASN ILE GLN GLU TRP LEU GLN LEU SEQRES 14 A 173 THR MET TYR SER SEQRES 1 B 173 GLU GLU VAL ARG GLN PHE ARG ARG LEU PHE ALA GLN LEU SEQRES 2 B 173 ALA GLY ASP ASP MET GLU VAL SER ALA THR GLU LEU MET SEQRES 3 B 173 ASN ILE LEU ASN LYS VAL VAL THR ARG HIS PRO ASP LEU SEQRES 4 B 173 LYS THR ASP GLY PHE GLY ILE ASP THR CYS ARG SER MET SEQRES 5 B 173 VAL ALA VAL MET ASP SER ASP THR THR GLY LYS LEU GLY SEQRES 6 B 173 PHE GLU GLU PHE LYS TYR LEU TRP ASN ASN ILE LYS LYS SEQRES 7 B 173 TRP GLN ALA ILE TYR LYS GLN PHE ASP VAL ASP ARG SER SEQRES 8 B 173 GLY THR ILE GLY SER SER GLU LEU PRO GLY ALA PHE GLU SEQRES 9 B 173 ALA ALA GLY PHE HIS LEU ASN GLU HIS LEU TYR SER MET SEQRES 10 B 173 ILE ILE ARG ARG TYR SER ASP GLU GLY GLY ASN MET ASP SEQRES 11 B 173 PHE ASP ASN PHE ILE SER CYS LEU VAL ARG LEU ASP ALA SEQRES 12 B 173 MET PHE ARG ALA PHE LYS SER LEU ASP LYS ASP GLY THR SEQRES 13 B 173 GLY GLN ILE GLN VAL ASN ILE GLN GLU TRP LEU GLN LEU SEQRES 14 B 173 THR MET TYR SER HET CA A 301 1 HET CA A 302 1 HET CA A 303 1 HET CA A 304 1 HET CA B 301 1 HET CA B 302 1 HET CA B 303 1 HET CA B 304 1 HETNAM CA CALCIUM ION FORMUL 3 CA 8(CA 2+) FORMUL 11 HOH *282(H2 O) HELIX 1 AA1 GLU A 94 GLY A 108 1 15 HELIX 2 AA2 SER A 114 ARG A 128 1 15 HELIX 3 AA3 GLY A 138 ASP A 150 1 13 HELIX 4 AA4 GLY A 158 ASP A 180 1 23 HELIX 5 AA5 GLU A 191 ALA A 199 1 9 HELIX 6 AA6 ASN A 204 SER A 216 1 13 HELIX 7 AA7 ASP A 223 ASP A 245 1 23 HELIX 8 AA8 ILE A 256 TYR A 265 1 10 HELIX 9 AA9 GLU B 95 GLY B 108 1 14 HELIX 10 AB1 ASP B 109 MET B 111 5 3 HELIX 11 AB2 SER B 114 ARG B 128 1 15 HELIX 12 AB3 GLY B 138 ASP B 150 1 13 HELIX 13 AB4 GLY B 158 ASP B 180 1 23 HELIX 14 AB5 GLU B 191 ALA B 199 1 9 HELIX 15 AB6 ASN B 204 SER B 216 1 13 HELIX 16 AB7 ASP B 223 LEU B 244 1 22 HELIX 17 AB8 ILE B 256 MET B 264 1 9 SHEET 1 AA1 2 ILE A 187 GLY A 188 0 SHEET 2 AA1 2 ASN A 221 MET A 222 -1 O MET A 222 N ILE A 187 SHEET 1 AA2 2 GLN A 251 ASN A 255 0 SHEET 2 AA2 2 GLN B 251 ASN B 255 -1 O ILE B 252 N VAL A 254 LINK O ALA A 107 CA CA A 301 1555 1555 2.43 LINK OD1 ASP A 110 CA CA A 301 1555 1555 2.42 LINK O GLU A 112 CA CA A 301 1555 1555 2.42 LINK OE1 GLU A 117 CA CA A 301 1555 1555 2.50 LINK OE2 GLU A 117 CA CA A 301 1555 1555 2.56 LINK OD1 ASP A 135 CA CA A 304 1555 1555 2.42 LINK OD1 ASP A 150 CA CA A 302 1555 1555 2.33 LINK OD1 ASP A 152 CA CA A 302 1555 1555 2.28 LINK OG1 THR A 154 CA CA A 302 1555 1555 2.48 LINK O LYS A 156 CA CA A 302 1555 1555 2.28 LINK OE1 GLU A 161 CA CA A 302 1555 1555 2.39 LINK OE2 GLU A 161 CA CA A 302 1555 1555 2.91 LINK OD1 ASP A 180 CA CA A 303 1555 1555 2.30 LINK OD1 ASP A 182 CA CA A 303 1555 1555 2.32 LINK OG SER A 184 CA CA A 303 1555 1555 2.59 LINK O THR A 186 CA CA A 303 1555 1555 2.31 LINK OE1 GLU A 191 CA CA A 303 1555 1555 2.57 LINK OE2 GLU A 191 CA CA A 303 1555 1555 2.46 LINK OD1 ASP A 223 CA CA A 304 1555 1555 2.47 LINK OD2 ASP A 223 CA CA A 304 1555 1555 2.61 LINK OD1 ASP A 225 CA CA A 304 1555 1555 2.52 LINK OD2 ASP A 225 CA CA A 304 1555 1555 2.70 LINK OD1 ASN A 226 CA CA A 304 1555 1555 2.44 LINK CA CA A 301 O HOH A 418 1555 1555 2.49 LINK CA CA A 301 O HOH A 491 1555 1555 2.35 LINK CA CA A 302 O HOH A 440 1555 1555 2.48 LINK CA CA A 303 O HOH A 498 1555 1555 1.98 LINK CA CA A 304 O HOH A 488 1555 1555 2.16 LINK CA CA A 304 O HOH B 417 1555 1555 2.46 LINK O ALA B 107 CA CA B 301 1555 1555 2.13 LINK OD1 ASP B 110 CA CA B 301 1555 1555 2.24 LINK O GLU B 112 CA CA B 301 1555 1555 2.37 LINK OE1 GLU B 117 CA CA B 301 1555 1555 2.50 LINK OE2 GLU B 117 CA CA B 301 1555 1555 2.60 LINK OD1 ASP B 135 CA CA B 304 1555 1555 2.43 LINK OD1 ASP B 150 CA CA B 302 1555 1555 2.36 LINK OD1 ASP B 152 CA CA B 302 1555 1555 2.22 LINK OG1 THR B 154 CA CA B 302 1555 1555 2.40 LINK O LYS B 156 CA CA B 302 1555 1555 2.38 LINK OE1 GLU B 161 CA CA B 302 1555 1555 2.39 LINK OE2 GLU B 161 CA CA B 302 1555 1555 2.76 LINK OD1 ASP B 180 CA CA B 303 1555 1555 2.26 LINK OD1 ASP B 182 CA CA B 303 1555 1555 2.22 LINK OG SER B 184 CA CA B 303 1555 1555 2.45 LINK O THR B 186 CA CA B 303 1555 1555 2.42 LINK OE1 GLU B 191 CA CA B 303 1555 1555 2.55 LINK OE2 GLU B 191 CA CA B 303 1555 1555 2.67 LINK OD1 ASP B 223 CA CA B 304 1555 1555 2.53 LINK OD2 ASP B 223 CA CA B 304 1555 1555 2.45 LINK OD1 ASP B 225 CA CA B 304 1555 1555 2.48 LINK OD2 ASP B 225 CA CA B 304 1555 1555 2.50 LINK OD1 ASN B 226 CA CA B 304 1555 1555 2.40 LINK CA CA B 301 O HOH B 414 1555 1555 2.41 LINK CA CA B 301 O HOH B 469 1555 1555 2.37 LINK CA CA B 302 O HOH B 409 1555 1555 2.44 LINK CA CA B 303 O HOH B 505 1555 1555 2.17 LINK CA CA B 304 O HOH B 457 1555 1555 2.57 LINK CA CA B 304 O HOH B 499 1555 1555 2.49 SITE 1 AC1 6 ALA A 107 ASP A 110 GLU A 112 GLU A 117 SITE 2 AC1 6 HOH A 418 HOH A 491 SITE 1 AC2 6 ASP A 150 ASP A 152 THR A 154 LYS A 156 SITE 2 AC2 6 GLU A 161 HOH A 440 SITE 1 AC3 6 ASP A 180 ASP A 182 SER A 184 THR A 186 SITE 2 AC3 6 GLU A 191 HOH A 498 SITE 1 AC4 6 ASP A 135 ASP A 223 ASP A 225 ASN A 226 SITE 2 AC4 6 HOH A 488 HOH B 417 SITE 1 AC5 6 ALA B 107 ASP B 110 GLU B 112 GLU B 117 SITE 2 AC5 6 HOH B 414 HOH B 469 SITE 1 AC6 6 ASP B 150 ASP B 152 THR B 154 LYS B 156 SITE 2 AC6 6 GLU B 161 HOH B 409 SITE 1 AC7 6 ASP B 180 ASP B 182 SER B 184 THR B 186 SITE 2 AC7 6 GLU B 191 HOH B 505 SITE 1 AC8 6 ASP B 135 ASP B 223 ASP B 225 ASN B 226 SITE 2 AC8 6 HOH B 457 HOH B 499 CRYST1 49.530 70.560 58.670 90.00 108.79 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020190 0.000000 0.006869 0.00000 SCALE2 0.000000 0.014172 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018004 0.00000