HEADER FATTY ACID BINDING PROTEIN/HYDROLASE 07-MAY-14 4PHU TITLE CRYSTAL STRUCTURE OF HUMAN GPR40 BOUND TO ALLOSTERIC AGONIST TAK-875 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FREE FATTY ACID RECEPTOR 1,LYSOZYME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP O14842 RESIDUES 2-213, UNP P00720 RESIDUES 2-161, UNP COMPND 5 O14842 RESIDUES 214-300; COMPND 6 SYNONYM: G-PROTEIN COUPLED RECEPTOR 40,ENDOLYSIN,LYSIS PROTEIN, COMPND 7 MURAMIDASE; COMPND 8 EC: 3.2.1.17; COMPND 9 ENGINEERED: YES; COMPND 10 MUTATION: YES; COMPND 11 OTHER_DETAILS: CHIMERA SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606, 10665; SOURCE 5 GENE: FFAR1, GPR40, E; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PFASTBAC1 KEYWDS GPR40, FATTY ACID BINDING PROTEIN, CLASS A, G-PROTEIN COUPLED KEYWDS 2 RECEPTOR, TYPE II DIABETES, TAK-875, FASIGLIFAM, FATTY ACID BINDING KEYWDS 3 PROTEIN-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.SRIVASTAVA,J.K.YANO,Y.HIROZANE,G.KEFALA,G.SNELL,W.LANE,F.GRUSWITZ, AUTHOR 2 A.IVETAC,K.AERTGEERTS,J.NGUYEN,A.JENNINGS,K.OKADA REVDAT 7 06-NOV-24 4PHU 1 REMARK REVDAT 6 27-SEP-23 4PHU 1 REMARK REVDAT 5 22-NOV-17 4PHU 1 SOURCE JRNL REMARK REVDAT 4 01-OCT-14 4PHU 1 JRNL REVDAT 3 06-AUG-14 4PHU 1 JRNL REVDAT 2 23-JUL-14 4PHU 1 JRNL REVDAT 1 16-JUL-14 4PHU 0 JRNL AUTH A.SRIVASTAVA,J.YANO,Y.HIROZANE,G.KEFALA,F.GRUSWITZ,G.SNELL, JRNL AUTH 2 W.LANE,A.IVETAC,K.AERTGEERTS,J.NGUYEN,A.JENNINGS,K.OKADA JRNL TITL HIGH-RESOLUTION STRUCTURE OF THE HUMAN GPR40 RECEPTOR BOUND JRNL TITL 2 TO ALLOSTERIC AGONIST TAK-875. JRNL REF NATURE V. 513 124 2014 JRNL REFN ESSN 1476-4687 JRNL PMID 25043059 JRNL DOI 10.1038/NATURE13494 REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 25947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1312 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1493 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.51 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.3320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3272 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 127 REMARK 3 SOLVENT ATOMS : 90 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.17000 REMARK 3 B22 (A**2) : -0.55000 REMARK 3 B33 (A**2) : -1.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.24000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.272 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.734 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3495 ; 0.007 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3421 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4739 ; 1.118 ; 1.995 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7832 ; 0.743 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 4.978 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;35.679 ;22.258 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;16.263 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.969 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.062 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3884 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 808 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1740 ; 1.104 ; 2.538 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1739 ; 1.103 ; 2.537 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2173 ; 1.894 ; 3.798 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 15 A 211 REMARK 3 ORIGIN FOR THE GROUP (A): -40.269 0.623 51.538 REMARK 3 T TENSOR REMARK 3 T11: 0.0340 T22: 0.1301 REMARK 3 T33: 0.0191 T12: 0.0036 REMARK 3 T13: 0.0245 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.5093 L22: 3.0002 REMARK 3 L33: 2.0220 L12: -0.1434 REMARK 3 L13: -0.0549 L23: 0.2796 REMARK 3 S TENSOR REMARK 3 S11: 0.0252 S12: 0.0435 S13: -0.0150 REMARK 3 S21: 0.0042 S22: -0.0383 S23: 0.0275 REMARK 3 S31: 0.0545 S32: -0.1818 S33: 0.0131 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1002 A 1161 REMARK 3 ORIGIN FOR THE GROUP (A): -10.522 -4.052 7.140 REMARK 3 T TENSOR REMARK 3 T11: 0.1519 T22: 0.4986 REMARK 3 T33: 0.0981 T12: -0.0572 REMARK 3 T13: 0.0846 T23: -0.0455 REMARK 3 L TENSOR REMARK 3 L11: 0.8935 L22: 1.0345 REMARK 3 L33: 8.4949 L12: -0.5072 REMARK 3 L13: 1.6192 L23: -0.4588 REMARK 3 S TENSOR REMARK 3 S11: 0.1086 S12: 0.1813 S13: -0.0931 REMARK 3 S21: -0.0555 S22: -0.0463 S23: 0.0718 REMARK 3 S31: 0.5592 S32: -0.7243 S33: -0.0623 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2214 A 2280 REMARK 3 ORIGIN FOR THE GROUP (A): -29.221 0.367 48.140 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.1764 REMARK 3 T33: 0.0857 T12: 0.0029 REMARK 3 T13: 0.0438 T23: 0.0187 REMARK 3 L TENSOR REMARK 3 L11: 2.3713 L22: 0.9182 REMARK 3 L33: 3.0061 L12: 0.2551 REMARK 3 L13: -0.6025 L23: -0.0158 REMARK 3 S TENSOR REMARK 3 S11: -0.0516 S12: 0.1577 S13: 0.1050 REMARK 3 S21: -0.0759 S22: -0.0678 S23: -0.1529 REMARK 3 S31: -0.1490 S32: 0.2641 S33: 0.1194 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4PHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201394. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAY-12; 05-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : ALS; APS REMARK 200 BEAMLINE : 5.0.3; 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976; 1.0 REMARK 200 MONOCHROMATOR : SI(220); NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; MARMOSAIC 300 REMARK 200 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26022 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.12000 REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.62300 REMARK 200 R SYM FOR SHELL (I) : 0.62300 REMARK 200 FOR SHELL : 1.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP 10.2.35 REMARK 200 STARTING MODEL: 4EJ4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 29-31% PEG 400,100 MM TRIS PH 8.0. 0.2 REMARK 280 M NA MALONATE,200 UM TAK-875, LIPIDIC CUBIC PHASE, TEMPERATURE REMARK 280 294K. 39.8 % PEG 400, 100 MM BIS-TRIS-PROPANE PH 7.2, 0.1 REMARK 280 AMMONIUM PHOSPHATE (MONOBASIC), 200 UM TAK-875, LIPIDIC CUBIC REMARK 280 PHASE, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.50000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.87000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.50000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.87000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 ASP A -11 REMARK 465 TYR A -10 REMARK 465 LYS A -9 REMARK 465 ASP A -8 REMARK 465 ASP A -7 REMARK 465 ASP A -6 REMARK 465 ASP A -5 REMARK 465 LYS A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 ALA A -1 REMARK 465 THR A 0 REMARK 465 LEU A 112 REMARK 465 GLY A 113 REMARK 465 TYR A 114 REMARK 465 GLN A 115 REMARK 465 ALA A 116 REMARK 465 PHE A 117 REMARK 465 ARG A 118 REMARK 465 ARG A 119 REMARK 465 ARG A 2281 REMARK 465 GLY A 2282 REMARK 465 PRO A 2283 REMARK 465 GLY A 2284 REMARK 465 LEU A 2285 REMARK 465 LYS A 2286 REMARK 465 THR A 2287 REMARK 465 VAL A 2288 REMARK 465 CYS A 2289 REMARK 465 ALA A 2290 REMARK 465 ALA A 2291 REMARK 465 ARG A 2292 REMARK 465 THR A 2293 REMARK 465 GLN A 2294 REMARK 465 GLY A 2295 REMARK 465 GLY A 2296 REMARK 465 LYS A 2297 REMARK 465 SER A 2298 REMARK 465 GLN A 2299 REMARK 465 LYS A 2300 REMARK 465 ALA A 2301 REMARK 465 GLU A 2302 REMARK 465 ASN A 2303 REMARK 465 LEU A 2304 REMARK 465 TYR A 2305 REMARK 465 PHE A 2306 REMARK 465 GLN A 2307 REMARK 465 GLY A 2308 REMARK 465 HIS A 2309 REMARK 465 HIS A 2310 REMARK 465 HIS A 2311 REMARK 465 HIS A 2312 REMARK 465 HIS A 2313 REMARK 465 HIS A 2314 REMARK 465 HIS A 2315 REMARK 465 HIS A 2316 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 38 CG CD1 CD2 REMARK 470 ARG A1137 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 2240 O33 2YB A 2401 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 37 -64.57 -105.86 REMARK 500 LEU A 38 92.66 94.00 REMARK 500 ASN A 155 58.65 -91.88 REMARK 500 LEU A 171 -50.16 70.77 REMARK 500 PHE A 191 -57.92 -122.13 REMARK 500 ASP A1020 -178.03 -65.35 REMARK 500 SER A1038 111.92 -161.93 REMARK 500 TYR A1161 75.42 -107.03 REMARK 500 CYS A2236 -76.93 -97.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 2402 REMARK 610 OLC A 2403 REMARK 610 OLC A 2405 REMARK 610 OLC A 2406 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 2YB A 2401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 2402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 2404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 2405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 2406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 2407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 2408 DBREF 4PHU A 1 211 UNP O14842 FFAR1_HUMAN 1 211 DBREF 4PHU A 1002 1161 UNP P00720 LYS_BPT4 2 161 DBREF 4PHU A 2214 2300 UNP O14842 FFAR1_HUMAN 214 300 SEQADV 4PHU MET A -12 UNP O14842 EXPRESSION TAG SEQADV 4PHU ASP A -11 UNP O14842 EXPRESSION TAG SEQADV 4PHU TYR A -10 UNP O14842 EXPRESSION TAG SEQADV 4PHU LYS A -9 UNP O14842 EXPRESSION TAG SEQADV 4PHU ASP A -8 UNP O14842 EXPRESSION TAG SEQADV 4PHU ASP A -7 UNP O14842 EXPRESSION TAG SEQADV 4PHU ASP A -6 UNP O14842 EXPRESSION TAG SEQADV 4PHU ASP A -5 UNP O14842 EXPRESSION TAG SEQADV 4PHU LYS A -4 UNP O14842 EXPRESSION TAG SEQADV 4PHU GLY A -3 UNP O14842 EXPRESSION TAG SEQADV 4PHU SER A -2 UNP O14842 EXPRESSION TAG SEQADV 4PHU ALA A -1 UNP O14842 EXPRESSION TAG SEQADV 4PHU THR A 0 UNP O14842 EXPRESSION TAG SEQADV 4PHU ALA A 42 UNP O14842 LEU 42 ENGINEERED MUTATION SEQADV 4PHU ALA A 88 UNP O14842 PHE 88 ENGINEERED MUTATION SEQADV 4PHU ALA A 103 UNP O14842 GLY 103 ENGINEERED MUTATION SEQADV 4PHU PHE A 202 UNP O14842 TYR 202 ENGINEERED MUTATION SEQADV 4PHU GLY A 900 UNP O14842 LINKER SEQADV 4PHU SER A 901 UNP O14842 LINKER SEQADV 4PHU THR A 1054 UNP P00720 CYS 54 ENGINEERED MUTATION SEQADV 4PHU ALA A 1097 UNP P00720 CYS 97 ENGINEERED MUTATION SEQADV 4PHU GLY A 1902 UNP P00720 LINKER SEQADV 4PHU SER A 1903 UNP P00720 LINKER SEQADV 4PHU ALA A 2301 UNP O14842 EXPRESSION TAG SEQADV 4PHU GLU A 2302 UNP O14842 EXPRESSION TAG SEQADV 4PHU ASN A 2303 UNP O14842 EXPRESSION TAG SEQADV 4PHU LEU A 2304 UNP O14842 EXPRESSION TAG SEQADV 4PHU TYR A 2305 UNP O14842 EXPRESSION TAG SEQADV 4PHU PHE A 2306 UNP O14842 EXPRESSION TAG SEQADV 4PHU GLN A 2307 UNP O14842 EXPRESSION TAG SEQADV 4PHU GLY A 2308 UNP O14842 EXPRESSION TAG SEQADV 4PHU HIS A 2309 UNP O14842 EXPRESSION TAG SEQADV 4PHU HIS A 2310 UNP O14842 EXPRESSION TAG SEQADV 4PHU HIS A 2311 UNP O14842 EXPRESSION TAG SEQADV 4PHU HIS A 2312 UNP O14842 EXPRESSION TAG SEQADV 4PHU HIS A 2313 UNP O14842 EXPRESSION TAG SEQADV 4PHU HIS A 2314 UNP O14842 EXPRESSION TAG SEQADV 4PHU HIS A 2315 UNP O14842 EXPRESSION TAG SEQADV 4PHU HIS A 2316 UNP O14842 EXPRESSION TAG SEQRES 1 A 491 MET ASP TYR LYS ASP ASP ASP ASP LYS GLY SER ALA THR SEQRES 2 A 491 MET ASP LEU PRO PRO GLN LEU SER PHE GLY LEU TYR VAL SEQRES 3 A 491 ALA ALA PHE ALA LEU GLY PHE PRO LEU ASN VAL LEU ALA SEQRES 4 A 491 ILE ARG GLY ALA THR ALA HIS ALA ARG LEU ARG LEU THR SEQRES 5 A 491 PRO SER ALA VAL TYR ALA LEU ASN LEU GLY CYS SER ASP SEQRES 6 A 491 LEU LEU LEU THR VAL SER LEU PRO LEU LYS ALA VAL GLU SEQRES 7 A 491 ALA LEU ALA SER GLY ALA TRP PRO LEU PRO ALA SER LEU SEQRES 8 A 491 CYS PRO VAL PHE ALA VAL ALA HIS PHE ALA PRO LEU TYR SEQRES 9 A 491 ALA GLY GLY GLY PHE LEU ALA ALA LEU SER ALA ALA ARG SEQRES 10 A 491 TYR LEU GLY ALA ALA PHE PRO LEU GLY TYR GLN ALA PHE SEQRES 11 A 491 ARG ARG PRO CYS TYR SER TRP GLY VAL CYS ALA ALA ILE SEQRES 12 A 491 TRP ALA LEU VAL LEU CYS HIS LEU GLY LEU VAL PHE GLY SEQRES 13 A 491 LEU GLU ALA PRO GLY GLY TRP LEU ASP HIS SER ASN THR SEQRES 14 A 491 SER LEU GLY ILE ASN THR PRO VAL ASN GLY SER PRO VAL SEQRES 15 A 491 CYS LEU GLU ALA TRP ASP PRO ALA SER ALA GLY PRO ALA SEQRES 16 A 491 ARG PHE SER LEU SER LEU LEU LEU PHE PHE LEU PRO LEU SEQRES 17 A 491 ALA ILE THR ALA PHE CYS PHE VAL GLY CYS LEU ARG ALA SEQRES 18 A 491 LEU ALA ARG GLY SER ASN ILE PHE GLU MET LEU ARG ILE SEQRES 19 A 491 ASP GLU GLY LEU ARG LEU LYS ILE TYR LYS ASP THR GLU SEQRES 20 A 491 GLY TYR TYR THR ILE GLY ILE GLY HIS LEU LEU THR LYS SEQRES 21 A 491 SER PRO SER LEU ASN ALA ALA LYS SER GLU LEU ASP LYS SEQRES 22 A 491 ALA ILE GLY ARG ASN THR ASN GLY VAL ILE THR LYS ASP SEQRES 23 A 491 GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP ALA ALA SEQRES 24 A 491 VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS PRO VAL SEQRES 25 A 491 TYR ASP SER LEU ASP ALA VAL ARG ARG ALA ALA LEU ILE SEQRES 26 A 491 ASN MET VAL PHE GLN MET GLY GLU THR GLY VAL ALA GLY SEQRES 27 A 491 PHE THR ASN SER LEU ARG MET LEU GLN GLN LYS ARG TRP SEQRES 28 A 491 ASP GLU ALA ALA VAL ASN LEU ALA LYS SER ARG TRP TYR SEQRES 29 A 491 ASN GLN THR PRO ASN ARG ALA LYS ARG VAL ILE THR THR SEQRES 30 A 491 PHE ARG THR GLY THR TRP ASP ALA TYR GLY SER LEU THR SEQRES 31 A 491 HIS ARG ARG LYS LEU ARG ALA ALA TRP VAL ALA GLY GLY SEQRES 32 A 491 ALA LEU LEU THR LEU LEU LEU CYS VAL GLY PRO TYR ASN SEQRES 33 A 491 ALA SER ASN VAL ALA SER PHE LEU TYR PRO ASN LEU GLY SEQRES 34 A 491 GLY SER TRP ARG LYS LEU GLY LEU ILE THR GLY ALA TRP SEQRES 35 A 491 SER VAL VAL LEU ASN PRO LEU VAL THR GLY TYR LEU GLY SEQRES 36 A 491 ARG GLY PRO GLY LEU LYS THR VAL CYS ALA ALA ARG THR SEQRES 37 A 491 GLN GLY GLY LYS SER GLN LYS ALA GLU ASN LEU TYR PHE SEQRES 38 A 491 GLN GLY HIS HIS HIS HIS HIS HIS HIS HIS HET 2YB A2401 37 HET OLC A2402 16 HET OLC A2403 8 HET OLC A2404 25 HET OLC A2405 12 HET OLC A2406 9 HET 1PE A2407 16 HET DMS A2408 4 HETNAM 2YB [(3S)-6-({2',6'-DIMETHYL-4'-[3-(METHYLSULFONYL) HETNAM 2 2YB PROPOXY]BIPHENYL-3-YL}METHOXY)-2,3-DIHYDRO-1- HETNAM 3 2YB BENZOFURAN-3-YL]ACETIC ACID HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM 1PE PENTAETHYLENE GLYCOL HETNAM DMS DIMETHYL SULFOXIDE HETSYN OLC 1-OLEOYL-R-GLYCEROL HETSYN 1PE PEG400 FORMUL 2 2YB C29 H32 O7 S FORMUL 3 OLC 5(C21 H40 O4) FORMUL 8 1PE C10 H22 O6 FORMUL 9 DMS C2 H6 O S FORMUL 10 HOH *90(H2 O) HELIX 1 AA1 PRO A 4 ARG A 37 1 34 HELIX 2 AA2 THR A 39 ALA A 68 1 30 HELIX 3 AA3 SER A 77 PHE A 110 1 34 HELIX 4 AA4 CYS A 121 ALA A 146 1 26 HELIX 5 AA5 ASP A 175 PHE A 191 1 17 HELIX 6 AA6 PHE A 191 ARG A 211 1 21 HELIX 7 AA7 ASN A 1002 GLY A 1012 1 11 HELIX 8 AA8 SER A 1038 GLY A 1051 1 14 HELIX 9 AA9 THR A 1059 ARG A 1080 1 22 HELIX 10 AB1 LEU A 1084 LEU A 1091 1 8 HELIX 11 AB2 ASP A 1092 GLY A 1113 1 22 HELIX 12 AB3 PHE A 1114 GLN A 1123 1 10 HELIX 13 AB4 ARG A 1125 ALA A 1134 1 10 HELIX 14 AB5 SER A 1136 THR A 1142 1 7 HELIX 15 AB6 THR A 1142 GLY A 1156 1 15 HELIX 16 AB7 SER A 1903 CYS A 2236 1 24 HELIX 17 AB8 CYS A 2236 TYR A 2250 1 15 HELIX 18 AB9 GLY A 2255 TRP A 2267 1 13 HELIX 19 AC1 TRP A 2267 THR A 2276 1 10 SHEET 1 AA1 2 ILE A 160 ASN A 161 0 SHEET 2 AA1 2 VAL A 169 CYS A 170 -1 O VAL A 169 N ASN A 161 SHEET 1 AA2 3 ARG A1014 LYS A1019 0 SHEET 2 AA2 3 TYR A1025 GLY A1028 -1 O THR A1026 N TYR A1018 SHEET 3 AA2 3 HIS A1031 THR A1034 -1 O LEU A1033 N TYR A1025 SSBOND 1 CYS A 79 CYS A 170 1555 1555 2.09 SITE 1 AC1 12 PRO A 80 PHE A 87 TYR A 91 LEU A 135 SITE 2 AC1 12 LEU A 138 GLY A 139 PHE A 142 LEU A 158 SITE 3 AC1 12 TRP A 174 ARG A 183 TYR A2240 ARG A2258 SITE 1 AC2 2 ILE A 27 PHE A2248 SITE 1 AC3 9 PRO A 40 TYR A 44 VAL A 64 ALA A 102 SITE 2 AC3 9 ALA A 103 LEU A 106 TYR A 122 ALA A 129 SITE 3 AC3 9 ILE A 197 SITE 1 AC4 1 CYS A 50 SITE 1 AC5 1 LEU A 7 SITE 1 AC6 5 GLN A 6 LEU A 67 CYS A 121 GLY A 125 SITE 2 AC6 5 CYS A 136 SITE 1 AC7 4 LEU A2234 GLY A2238 PRO A2239 ALA A2242 CRYST1 101.000 61.740 105.700 90.00 108.90 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009901 0.000000 0.003390 0.00000 SCALE2 0.000000 0.016197 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010000 0.00000