HEADER FATTY ACID BINDING PROTEIN/HYDROLASE 07-MAY-14 4PHU
TITLE CRYSTAL STRUCTURE OF HUMAN GPR40 BOUND TO ALLOSTERIC AGONIST TAK-875
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: FREE FATTY ACID RECEPTOR 1,LYSOZYME;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP O14842 RESIDUES 2-213, UNP P00720 RESIDUES 2-161, UNP
COMPND 5 O14842 RESIDUES 214-300;
COMPND 6 SYNONYM: G-PROTEIN COUPLED RECEPTOR 40,ENDOLYSIN,LYSIS PROTEIN,
COMPND 7 MURAMIDASE;
COMPND 8 EC: 3.2.1.17;
COMPND 9 ENGINEERED: YES;
COMPND 10 MUTATION: YES;
COMPND 11 OTHER_DETAILS: CHIMERA
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS, ENTEROBACTERIA PHAGE T4;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606, 10665;
SOURCE 5 GENE: FFAR1, GPR40, E;
SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9;
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PFASTBAC1
KEYWDS GPR40, FATTY ACID BINDING PROTEIN, CLASS A, G-PROTEIN COUPLED
KEYWDS 2 RECEPTOR, TYPE II DIABETES, TAK-875, FASIGLIFAM, FATTY ACID BINDING
KEYWDS 3 PROTEIN-HYDROLASE COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR A.SRIVASTAVA,J.K.YANO,Y.HIROZANE,G.KEFALA,G.SNELL,W.LANE,F.GRUSWITZ,
AUTHOR 2 A.IVETAC,K.AERTGEERTS,J.NGUYEN,A.JENNINGS,K.OKADA
REVDAT 7 06-NOV-24 4PHU 1 REMARK
REVDAT 6 27-SEP-23 4PHU 1 REMARK
REVDAT 5 22-NOV-17 4PHU 1 SOURCE JRNL REMARK
REVDAT 4 01-OCT-14 4PHU 1 JRNL
REVDAT 3 06-AUG-14 4PHU 1 JRNL
REVDAT 2 23-JUL-14 4PHU 1 JRNL
REVDAT 1 16-JUL-14 4PHU 0
JRNL AUTH A.SRIVASTAVA,J.YANO,Y.HIROZANE,G.KEFALA,F.GRUSWITZ,G.SNELL,
JRNL AUTH 2 W.LANE,A.IVETAC,K.AERTGEERTS,J.NGUYEN,A.JENNINGS,K.OKADA
JRNL TITL HIGH-RESOLUTION STRUCTURE OF THE HUMAN GPR40 RECEPTOR BOUND
JRNL TITL 2 TO ALLOSTERIC AGONIST TAK-875.
JRNL REF NATURE V. 513 124 2014
JRNL REFN ESSN 1476-4687
JRNL PMID 25043059
JRNL DOI 10.1038/NATURE13494
REMARK 2
REMARK 2 RESOLUTION. 2.33 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : REFMAC 5.8.0049
REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER,
REMARK 3 : NICHOLLS,WINN,LONG,VAGIN
REMARK 3
REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00
REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000
REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9
REMARK 3 NUMBER OF REFLECTIONS : 25947
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT
REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM
REMARK 3 R VALUE (WORKING + TEST SET) : 0.200
REMARK 3 R VALUE (WORKING SET) : 0.198
REMARK 3 FREE R VALUE : 0.233
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100
REMARK 3 FREE R VALUE TEST SET COUNT : 1312
REMARK 3
REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN.
REMARK 3 TOTAL NUMBER OF BINS USED : 20
REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.33
REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.39
REMARK 3 REFLECTION IN BIN (WORKING SET) : 1493
REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.51
REMARK 3 BIN R VALUE (WORKING SET) : 0.2670
REMARK 3 BIN FREE R VALUE SET COUNT : 67
REMARK 3 BIN FREE R VALUE : 0.3320
REMARK 3
REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT.
REMARK 3 PROTEIN ATOMS : 3272
REMARK 3 NUCLEIC ACID ATOMS : 0
REMARK 3 HETEROGEN ATOMS : 127
REMARK 3 SOLVENT ATOMS : 90
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.54
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : 2.17000
REMARK 3 B22 (A**2) : -0.55000
REMARK 3 B33 (A**2) : -1.18000
REMARK 3 B12 (A**2) : 0.00000
REMARK 3 B13 (A**2) : -0.24000
REMARK 3 B23 (A**2) : 0.00000
REMARK 3
REMARK 3 ESTIMATED OVERALL COORDINATE ERROR.
REMARK 3 ESU BASED ON R VALUE (A): 0.272
REMARK 3 ESU BASED ON FREE R VALUE (A): 0.210
REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.172
REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.734
REMARK 3
REMARK 3 CORRELATION COEFFICIENTS.
REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946
REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930
REMARK 3
REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT
REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3495 ; 0.007 ; 0.019
REMARK 3 BOND LENGTHS OTHERS (A): 3421 ; 0.001 ; 0.020
REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4739 ; 1.118 ; 1.995
REMARK 3 BOND ANGLES OTHERS (DEGREES): 7832 ; 0.743 ; 3.000
REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 438 ; 4.978 ; 5.000
REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 124 ;35.679 ;22.258
REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 511 ;16.263 ;15.000
REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;15.969 ;15.000
REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.062 ; 0.200
REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3884 ; 0.005 ; 0.021
REMARK 3 GENERAL PLANES OTHERS (A): 808 ; 0.001 ; 0.020
REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL
REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1740 ; 1.104 ; 2.538
REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1739 ; 1.103 ; 2.537
REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2173 ; 1.894 ; 3.798
REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT
REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL
REMARK 3
REMARK 3 NCS RESTRAINTS STATISTICS
REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 3
REMARK 3
REMARK 3 TLS GROUP : 1
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 15 A 211
REMARK 3 ORIGIN FOR THE GROUP (A): -40.269 0.623 51.538
REMARK 3 T TENSOR
REMARK 3 T11: 0.0340 T22: 0.1301
REMARK 3 T33: 0.0191 T12: 0.0036
REMARK 3 T13: 0.0245 T23: 0.0002
REMARK 3 L TENSOR
REMARK 3 L11: 1.5093 L22: 3.0002
REMARK 3 L33: 2.0220 L12: -0.1434
REMARK 3 L13: -0.0549 L23: 0.2796
REMARK 3 S TENSOR
REMARK 3 S11: 0.0252 S12: 0.0435 S13: -0.0150
REMARK 3 S21: 0.0042 S22: -0.0383 S23: 0.0275
REMARK 3 S31: 0.0545 S32: -0.1818 S33: 0.0131
REMARK 3
REMARK 3 TLS GROUP : 2
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 1002 A 1161
REMARK 3 ORIGIN FOR THE GROUP (A): -10.522 -4.052 7.140
REMARK 3 T TENSOR
REMARK 3 T11: 0.1519 T22: 0.4986
REMARK 3 T33: 0.0981 T12: -0.0572
REMARK 3 T13: 0.0846 T23: -0.0455
REMARK 3 L TENSOR
REMARK 3 L11: 0.8935 L22: 1.0345
REMARK 3 L33: 8.4949 L12: -0.5072
REMARK 3 L13: 1.6192 L23: -0.4588
REMARK 3 S TENSOR
REMARK 3 S11: 0.1086 S12: 0.1813 S13: -0.0931
REMARK 3 S21: -0.0555 S22: -0.0463 S23: 0.0718
REMARK 3 S31: 0.5592 S32: -0.7243 S33: -0.0623
REMARK 3
REMARK 3 TLS GROUP : 3
REMARK 3 NUMBER OF COMPONENTS GROUP : 1
REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI
REMARK 3 RESIDUE RANGE : A 2214 A 2280
REMARK 3 ORIGIN FOR THE GROUP (A): -29.221 0.367 48.140
REMARK 3 T TENSOR
REMARK 3 T11: 0.0687 T22: 0.1764
REMARK 3 T33: 0.0857 T12: 0.0029
REMARK 3 T13: 0.0438 T23: 0.0187
REMARK 3 L TENSOR
REMARK 3 L11: 2.3713 L22: 0.9182
REMARK 3 L33: 3.0061 L12: 0.2551
REMARK 3 L13: -0.6025 L23: -0.0158
REMARK 3 S TENSOR
REMARK 3 S11: -0.0516 S12: 0.1577 S13: 0.1050
REMARK 3 S21: -0.0759 S22: -0.0678 S23: -0.1529
REMARK 3 S31: -0.1490 S32: 0.2641 S33: 0.1194
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : MASK
REMARK 3 PARAMETERS FOR MASK CALCULATION
REMARK 3 VDW PROBE RADIUS : 1.20
REMARK 3 ION PROBE RADIUS : 0.80
REMARK 3 SHRINKAGE RADIUS : 0.80
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING
REMARK 3 POSITIONS U VALUES : WITH TLS ADDED
REMARK 4
REMARK 4 4PHU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-14.
REMARK 100 THE DEPOSITION ID IS D_1000201394.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 22-MAY-12; 05-JUN-12
REMARK 200 TEMPERATURE (KELVIN) : 100; 100
REMARK 200 PH : 8.0
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y; Y
REMARK 200 RADIATION SOURCE : ALS; APS
REMARK 200 BEAMLINE : 5.0.3; 23-ID-B
REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M
REMARK 200 WAVELENGTH OR RANGE (A) : 0.976; 1.0
REMARK 200 MONOCHROMATOR : SI(220); NULL
REMARK 200 OPTICS : NULL; NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD; CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R; MARMOSAIC 300
REMARK 200 MM CCD
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL
REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26022
REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330
REMARK 200 RESOLUTION RANGE LOW (A) : 100.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2
REMARK 200 DATA REDUNDANCY : 5.000
REMARK 200 R MERGE (I) : NULL
REMARK 200 R SYM (I) : 0.12000
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.3000
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46
REMARK 200 COMPLETENESS FOR SHELL (%) : 90.0
REMARK 200 DATA REDUNDANCY IN SHELL : 3.40
REMARK 200 R MERGE FOR SHELL (I) : 0.62300
REMARK 200 R SYM FOR SHELL (I) : 0.62300
REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.000
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: MOLREP 10.2.35
REMARK 200 STARTING MODEL: 4EJ4
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 58.10
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 29-31% PEG 400,100 MM TRIS PH 8.0. 0.2
REMARK 280 M NA MALONATE,200 UM TAK-875, LIPIDIC CUBIC PHASE, TEMPERATURE
REMARK 280 294K. 39.8 % PEG 400, 100 MM BIS-TRIS-PROPANE PH 7.2, 0.1
REMARK 280 AMMONIUM PHOSPHATE (MONOBASIC), 200 UM TAK-875, LIPIDIC CUBIC
REMARK 280 PHASE, TEMPERATURE 294K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X,Y,-Z
REMARK 290 3555 X+1/2,Y+1/2,Z
REMARK 290 4555 -X+1/2,Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000
REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.50000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.87000
REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.50000
REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 30.87000
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 MET A -12
REMARK 465 ASP A -11
REMARK 465 TYR A -10
REMARK 465 LYS A -9
REMARK 465 ASP A -8
REMARK 465 ASP A -7
REMARK 465 ASP A -6
REMARK 465 ASP A -5
REMARK 465 LYS A -4
REMARK 465 GLY A -3
REMARK 465 SER A -2
REMARK 465 ALA A -1
REMARK 465 THR A 0
REMARK 465 LEU A 112
REMARK 465 GLY A 113
REMARK 465 TYR A 114
REMARK 465 GLN A 115
REMARK 465 ALA A 116
REMARK 465 PHE A 117
REMARK 465 ARG A 118
REMARK 465 ARG A 119
REMARK 465 ARG A 2281
REMARK 465 GLY A 2282
REMARK 465 PRO A 2283
REMARK 465 GLY A 2284
REMARK 465 LEU A 2285
REMARK 465 LYS A 2286
REMARK 465 THR A 2287
REMARK 465 VAL A 2288
REMARK 465 CYS A 2289
REMARK 465 ALA A 2290
REMARK 465 ALA A 2291
REMARK 465 ARG A 2292
REMARK 465 THR A 2293
REMARK 465 GLN A 2294
REMARK 465 GLY A 2295
REMARK 465 GLY A 2296
REMARK 465 LYS A 2297
REMARK 465 SER A 2298
REMARK 465 GLN A 2299
REMARK 465 LYS A 2300
REMARK 465 ALA A 2301
REMARK 465 GLU A 2302
REMARK 465 ASN A 2303
REMARK 465 LEU A 2304
REMARK 465 TYR A 2305
REMARK 465 PHE A 2306
REMARK 465 GLN A 2307
REMARK 465 GLY A 2308
REMARK 465 HIS A 2309
REMARK 465 HIS A 2310
REMARK 465 HIS A 2311
REMARK 465 HIS A 2312
REMARK 465 HIS A 2313
REMARK 465 HIS A 2314
REMARK 465 HIS A 2315
REMARK 465 HIS A 2316
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 ARG A 37 CG CD NE CZ NH1 NH2
REMARK 470 LEU A 38 CG CD1 CD2
REMARK 470 ARG A1137 CG CD NE CZ NH1 NH2
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT
REMARK 500
REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT.
REMARK 500
REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE
REMARK 500 OH TYR A 2240 O33 2YB A 2401 2.12
REMARK 500
REMARK 500 REMARK: NULL
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ARG A 37 -64.57 -105.86
REMARK 500 LEU A 38 92.66 94.00
REMARK 500 ASN A 155 58.65 -91.88
REMARK 500 LEU A 171 -50.16 70.77
REMARK 500 PHE A 191 -57.92 -122.13
REMARK 500 ASP A1020 -178.03 -65.35
REMARK 500 SER A1038 111.92 -161.93
REMARK 500 TYR A1161 75.42 -107.03
REMARK 500 CYS A2236 -76.93 -97.88
REMARK 500
REMARK 500 REMARK: NULL
REMARK 610
REMARK 610 MISSING HETEROATOM
REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 610 I=INSERTION CODE):
REMARK 610 M RES C SSEQI
REMARK 610 OLC A 2402
REMARK 610 OLC A 2403
REMARK 610 OLC A 2405
REMARK 610 OLC A 2406
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 2YB A 2401
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 2402
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 2404
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC4
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 2405
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC5
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue OLC A 2406
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC6
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue 1PE A 2407
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC7
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: binding site for residue DMS A 2408
DBREF 4PHU A 1 211 UNP O14842 FFAR1_HUMAN 1 211
DBREF 4PHU A 1002 1161 UNP P00720 LYS_BPT4 2 161
DBREF 4PHU A 2214 2300 UNP O14842 FFAR1_HUMAN 214 300
SEQADV 4PHU MET A -12 UNP O14842 EXPRESSION TAG
SEQADV 4PHU ASP A -11 UNP O14842 EXPRESSION TAG
SEQADV 4PHU TYR A -10 UNP O14842 EXPRESSION TAG
SEQADV 4PHU LYS A -9 UNP O14842 EXPRESSION TAG
SEQADV 4PHU ASP A -8 UNP O14842 EXPRESSION TAG
SEQADV 4PHU ASP A -7 UNP O14842 EXPRESSION TAG
SEQADV 4PHU ASP A -6 UNP O14842 EXPRESSION TAG
SEQADV 4PHU ASP A -5 UNP O14842 EXPRESSION TAG
SEQADV 4PHU LYS A -4 UNP O14842 EXPRESSION TAG
SEQADV 4PHU GLY A -3 UNP O14842 EXPRESSION TAG
SEQADV 4PHU SER A -2 UNP O14842 EXPRESSION TAG
SEQADV 4PHU ALA A -1 UNP O14842 EXPRESSION TAG
SEQADV 4PHU THR A 0 UNP O14842 EXPRESSION TAG
SEQADV 4PHU ALA A 42 UNP O14842 LEU 42 ENGINEERED MUTATION
SEQADV 4PHU ALA A 88 UNP O14842 PHE 88 ENGINEERED MUTATION
SEQADV 4PHU ALA A 103 UNP O14842 GLY 103 ENGINEERED MUTATION
SEQADV 4PHU PHE A 202 UNP O14842 TYR 202 ENGINEERED MUTATION
SEQADV 4PHU GLY A 900 UNP O14842 LINKER
SEQADV 4PHU SER A 901 UNP O14842 LINKER
SEQADV 4PHU THR A 1054 UNP P00720 CYS 54 ENGINEERED MUTATION
SEQADV 4PHU ALA A 1097 UNP P00720 CYS 97 ENGINEERED MUTATION
SEQADV 4PHU GLY A 1902 UNP P00720 LINKER
SEQADV 4PHU SER A 1903 UNP P00720 LINKER
SEQADV 4PHU ALA A 2301 UNP O14842 EXPRESSION TAG
SEQADV 4PHU GLU A 2302 UNP O14842 EXPRESSION TAG
SEQADV 4PHU ASN A 2303 UNP O14842 EXPRESSION TAG
SEQADV 4PHU LEU A 2304 UNP O14842 EXPRESSION TAG
SEQADV 4PHU TYR A 2305 UNP O14842 EXPRESSION TAG
SEQADV 4PHU PHE A 2306 UNP O14842 EXPRESSION TAG
SEQADV 4PHU GLN A 2307 UNP O14842 EXPRESSION TAG
SEQADV 4PHU GLY A 2308 UNP O14842 EXPRESSION TAG
SEQADV 4PHU HIS A 2309 UNP O14842 EXPRESSION TAG
SEQADV 4PHU HIS A 2310 UNP O14842 EXPRESSION TAG
SEQADV 4PHU HIS A 2311 UNP O14842 EXPRESSION TAG
SEQADV 4PHU HIS A 2312 UNP O14842 EXPRESSION TAG
SEQADV 4PHU HIS A 2313 UNP O14842 EXPRESSION TAG
SEQADV 4PHU HIS A 2314 UNP O14842 EXPRESSION TAG
SEQADV 4PHU HIS A 2315 UNP O14842 EXPRESSION TAG
SEQADV 4PHU HIS A 2316 UNP O14842 EXPRESSION TAG
SEQRES 1 A 491 MET ASP TYR LYS ASP ASP ASP ASP LYS GLY SER ALA THR
SEQRES 2 A 491 MET ASP LEU PRO PRO GLN LEU SER PHE GLY LEU TYR VAL
SEQRES 3 A 491 ALA ALA PHE ALA LEU GLY PHE PRO LEU ASN VAL LEU ALA
SEQRES 4 A 491 ILE ARG GLY ALA THR ALA HIS ALA ARG LEU ARG LEU THR
SEQRES 5 A 491 PRO SER ALA VAL TYR ALA LEU ASN LEU GLY CYS SER ASP
SEQRES 6 A 491 LEU LEU LEU THR VAL SER LEU PRO LEU LYS ALA VAL GLU
SEQRES 7 A 491 ALA LEU ALA SER GLY ALA TRP PRO LEU PRO ALA SER LEU
SEQRES 8 A 491 CYS PRO VAL PHE ALA VAL ALA HIS PHE ALA PRO LEU TYR
SEQRES 9 A 491 ALA GLY GLY GLY PHE LEU ALA ALA LEU SER ALA ALA ARG
SEQRES 10 A 491 TYR LEU GLY ALA ALA PHE PRO LEU GLY TYR GLN ALA PHE
SEQRES 11 A 491 ARG ARG PRO CYS TYR SER TRP GLY VAL CYS ALA ALA ILE
SEQRES 12 A 491 TRP ALA LEU VAL LEU CYS HIS LEU GLY LEU VAL PHE GLY
SEQRES 13 A 491 LEU GLU ALA PRO GLY GLY TRP LEU ASP HIS SER ASN THR
SEQRES 14 A 491 SER LEU GLY ILE ASN THR PRO VAL ASN GLY SER PRO VAL
SEQRES 15 A 491 CYS LEU GLU ALA TRP ASP PRO ALA SER ALA GLY PRO ALA
SEQRES 16 A 491 ARG PHE SER LEU SER LEU LEU LEU PHE PHE LEU PRO LEU
SEQRES 17 A 491 ALA ILE THR ALA PHE CYS PHE VAL GLY CYS LEU ARG ALA
SEQRES 18 A 491 LEU ALA ARG GLY SER ASN ILE PHE GLU MET LEU ARG ILE
SEQRES 19 A 491 ASP GLU GLY LEU ARG LEU LYS ILE TYR LYS ASP THR GLU
SEQRES 20 A 491 GLY TYR TYR THR ILE GLY ILE GLY HIS LEU LEU THR LYS
SEQRES 21 A 491 SER PRO SER LEU ASN ALA ALA LYS SER GLU LEU ASP LYS
SEQRES 22 A 491 ALA ILE GLY ARG ASN THR ASN GLY VAL ILE THR LYS ASP
SEQRES 23 A 491 GLU ALA GLU LYS LEU PHE ASN GLN ASP VAL ASP ALA ALA
SEQRES 24 A 491 VAL ARG GLY ILE LEU ARG ASN ALA LYS LEU LYS PRO VAL
SEQRES 25 A 491 TYR ASP SER LEU ASP ALA VAL ARG ARG ALA ALA LEU ILE
SEQRES 26 A 491 ASN MET VAL PHE GLN MET GLY GLU THR GLY VAL ALA GLY
SEQRES 27 A 491 PHE THR ASN SER LEU ARG MET LEU GLN GLN LYS ARG TRP
SEQRES 28 A 491 ASP GLU ALA ALA VAL ASN LEU ALA LYS SER ARG TRP TYR
SEQRES 29 A 491 ASN GLN THR PRO ASN ARG ALA LYS ARG VAL ILE THR THR
SEQRES 30 A 491 PHE ARG THR GLY THR TRP ASP ALA TYR GLY SER LEU THR
SEQRES 31 A 491 HIS ARG ARG LYS LEU ARG ALA ALA TRP VAL ALA GLY GLY
SEQRES 32 A 491 ALA LEU LEU THR LEU LEU LEU CYS VAL GLY PRO TYR ASN
SEQRES 33 A 491 ALA SER ASN VAL ALA SER PHE LEU TYR PRO ASN LEU GLY
SEQRES 34 A 491 GLY SER TRP ARG LYS LEU GLY LEU ILE THR GLY ALA TRP
SEQRES 35 A 491 SER VAL VAL LEU ASN PRO LEU VAL THR GLY TYR LEU GLY
SEQRES 36 A 491 ARG GLY PRO GLY LEU LYS THR VAL CYS ALA ALA ARG THR
SEQRES 37 A 491 GLN GLY GLY LYS SER GLN LYS ALA GLU ASN LEU TYR PHE
SEQRES 38 A 491 GLN GLY HIS HIS HIS HIS HIS HIS HIS HIS
HET 2YB A2401 37
HET OLC A2402 16
HET OLC A2403 8
HET OLC A2404 25
HET OLC A2405 12
HET OLC A2406 9
HET 1PE A2407 16
HET DMS A2408 4
HETNAM 2YB [(3S)-6-({2',6'-DIMETHYL-4'-[3-(METHYLSULFONYL)
HETNAM 2 2YB PROPOXY]BIPHENYL-3-YL}METHOXY)-2,3-DIHYDRO-1-
HETNAM 3 2YB BENZOFURAN-3-YL]ACETIC ACID
HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
HETNAM 1PE PENTAETHYLENE GLYCOL
HETNAM DMS DIMETHYL SULFOXIDE
HETSYN OLC 1-OLEOYL-R-GLYCEROL
HETSYN 1PE PEG400
FORMUL 2 2YB C29 H32 O7 S
FORMUL 3 OLC 5(C21 H40 O4)
FORMUL 8 1PE C10 H22 O6
FORMUL 9 DMS C2 H6 O S
FORMUL 10 HOH *90(H2 O)
HELIX 1 AA1 PRO A 4 ARG A 37 1 34
HELIX 2 AA2 THR A 39 ALA A 68 1 30
HELIX 3 AA3 SER A 77 PHE A 110 1 34
HELIX 4 AA4 CYS A 121 ALA A 146 1 26
HELIX 5 AA5 ASP A 175 PHE A 191 1 17
HELIX 6 AA6 PHE A 191 ARG A 211 1 21
HELIX 7 AA7 ASN A 1002 GLY A 1012 1 11
HELIX 8 AA8 SER A 1038 GLY A 1051 1 14
HELIX 9 AA9 THR A 1059 ARG A 1080 1 22
HELIX 10 AB1 LEU A 1084 LEU A 1091 1 8
HELIX 11 AB2 ASP A 1092 GLY A 1113 1 22
HELIX 12 AB3 PHE A 1114 GLN A 1123 1 10
HELIX 13 AB4 ARG A 1125 ALA A 1134 1 10
HELIX 14 AB5 SER A 1136 THR A 1142 1 7
HELIX 15 AB6 THR A 1142 GLY A 1156 1 15
HELIX 16 AB7 SER A 1903 CYS A 2236 1 24
HELIX 17 AB8 CYS A 2236 TYR A 2250 1 15
HELIX 18 AB9 GLY A 2255 TRP A 2267 1 13
HELIX 19 AC1 TRP A 2267 THR A 2276 1 10
SHEET 1 AA1 2 ILE A 160 ASN A 161 0
SHEET 2 AA1 2 VAL A 169 CYS A 170 -1 O VAL A 169 N ASN A 161
SHEET 1 AA2 3 ARG A1014 LYS A1019 0
SHEET 2 AA2 3 TYR A1025 GLY A1028 -1 O THR A1026 N TYR A1018
SHEET 3 AA2 3 HIS A1031 THR A1034 -1 O LEU A1033 N TYR A1025
SSBOND 1 CYS A 79 CYS A 170 1555 1555 2.09
SITE 1 AC1 12 PRO A 80 PHE A 87 TYR A 91 LEU A 135
SITE 2 AC1 12 LEU A 138 GLY A 139 PHE A 142 LEU A 158
SITE 3 AC1 12 TRP A 174 ARG A 183 TYR A2240 ARG A2258
SITE 1 AC2 2 ILE A 27 PHE A2248
SITE 1 AC3 9 PRO A 40 TYR A 44 VAL A 64 ALA A 102
SITE 2 AC3 9 ALA A 103 LEU A 106 TYR A 122 ALA A 129
SITE 3 AC3 9 ILE A 197
SITE 1 AC4 1 CYS A 50
SITE 1 AC5 1 LEU A 7
SITE 1 AC6 5 GLN A 6 LEU A 67 CYS A 121 GLY A 125
SITE 2 AC6 5 CYS A 136
SITE 1 AC7 4 LEU A2234 GLY A2238 PRO A2239 ALA A2242
CRYST1 101.000 61.740 105.700 90.00 108.90 90.00 C 1 2 1 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.009901 0.000000 0.003390 0.00000
SCALE2 0.000000 0.016197 0.000000 0.00000
SCALE3 0.000000 0.000000 0.010000 0.00000