HEADER TRANSFERASE 09-MAY-14 4PIN TITLE ERGOTHIONEINE-BIOSYNTHETIC METHYLTRANSFERASE EGTD IN COMPLEX WITH N,N- TITLE 2 DIMETHYLHISTIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTIDINE-SPECIFIC METHYLTRANSFERASE EGTD; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HISTIDINE-ALPHA-N-METHYLTRANSFERASE; COMPND 5 EC: 2.1.1.44; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 1772; SOURCE 4 STRAIN: ATCC 607; SOURCE 5 GENE: EGTD, MSMEG_6247, MSMEI_6086; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET19M KEYWDS METHYLTRANSFERASE, ERGOTHIONEINE, HISTIDINE BETAINE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.VIT,F.P.SEEBECK,W.BLANKENFELDT REVDAT 4 27-SEP-23 4PIN 1 REMARK REVDAT 3 22-NOV-17 4PIN 1 SOURCE REMARK REVDAT 2 07-JAN-15 4PIN 1 JRNL REVDAT 1 03-DEC-14 4PIN 0 JRNL AUTH A.VIT,L.MISSON,W.BLANKENFELDT,F.P.SEEBECK JRNL TITL ERGOTHIONEINE BIOSYNTHETIC METHYLTRANSFERASE EGTD REVEALS JRNL TITL 2 THE STRUCTURAL BASIS OF AROMATIC AMINO ACID BETAINE JRNL TITL 3 BIOSYNTHESIS. JRNL REF CHEMBIOCHEM V. 16 119 2015 JRNL REFN ESSN 1439-7633 JRNL PMID 25404173 JRNL DOI 10.1002/CBIC.201402522 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH A.VIT,L.MISSON,W.BLANKENFELDT,F.P.SEEBECK REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF THE REMARK 1 TITL 2 ERGOTHIONEINE-BIOSYNTHETIC METHYLTRANSFERASE EGTD. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.F 676 2014 REMARK 1 REFN ESSN 1744-3091 REMARK 1 PMID 24817736 REMARK 1 DOI 10.1107/S2053230X1400805X REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 59243 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2991 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7949 - 5.2400 0.99 2860 155 0.1884 0.2082 REMARK 3 2 5.2400 - 4.1598 1.00 2754 136 0.1438 0.1626 REMARK 3 3 4.1598 - 3.6342 1.00 2737 150 0.1591 0.2099 REMARK 3 4 3.6342 - 3.3020 1.00 2713 133 0.1658 0.2107 REMARK 3 5 3.3020 - 3.0653 1.00 2692 133 0.1859 0.2285 REMARK 3 6 3.0653 - 2.8846 1.00 2680 146 0.1922 0.2284 REMARK 3 7 2.8846 - 2.7402 1.00 2699 146 0.1966 0.2510 REMARK 3 8 2.7402 - 2.6209 1.00 2681 142 0.1921 0.2515 REMARK 3 9 2.6209 - 2.5200 1.00 2649 163 0.1894 0.2368 REMARK 3 10 2.5200 - 2.4330 1.00 2684 138 0.1850 0.2258 REMARK 3 11 2.4330 - 2.3570 1.00 2642 147 0.1898 0.2568 REMARK 3 12 2.3570 - 2.2896 1.00 2661 153 0.2001 0.2385 REMARK 3 13 2.2896 - 2.2293 0.99 2622 146 0.3211 0.4139 REMARK 3 14 2.2293 - 2.1749 0.99 2633 124 0.2587 0.3378 REMARK 3 15 2.1749 - 2.1255 1.00 2643 146 0.2225 0.2410 REMARK 3 16 2.1255 - 2.0803 1.00 2639 149 0.2165 0.2422 REMARK 3 17 2.0803 - 2.0386 1.00 2657 135 0.2194 0.2580 REMARK 3 18 2.0386 - 2.0002 1.00 2644 134 0.2349 0.2842 REMARK 3 19 2.0002 - 1.9645 1.00 2645 143 0.2626 0.3176 REMARK 3 20 1.9645 - 1.9312 1.00 2658 139 0.3246 0.3958 REMARK 3 21 1.9312 - 1.9000 1.00 2659 133 0.4167 0.4489 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.07 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 5070 REMARK 3 ANGLE : 0.790 6896 REMARK 3 CHIRALITY : 0.030 787 REMARK 3 PLANARITY : 0.003 904 REMARK 3 DIHEDRAL : 12.973 1816 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0769 16.6779 20.5332 REMARK 3 T TENSOR REMARK 3 T11: 0.2060 T22: 0.2601 REMARK 3 T33: 0.2327 T12: -0.0138 REMARK 3 T13: -0.0367 T23: 0.0776 REMARK 3 L TENSOR REMARK 3 L11: 0.6892 L22: 0.7303 REMARK 3 L33: 0.2606 L12: 0.2792 REMARK 3 L13: -0.3867 L23: 0.0720 REMARK 3 S TENSOR REMARK 3 S11: 0.0791 S12: -0.1775 S13: -0.0533 REMARK 3 S21: 0.0695 S22: -0.0459 S23: -0.0368 REMARK 3 S31: -0.0063 S32: 0.0329 S33: -0.0221 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 78 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.7017 28.6703 19.8666 REMARK 3 T TENSOR REMARK 3 T11: 0.2747 T22: 0.2690 REMARK 3 T33: 0.2267 T12: -0.0384 REMARK 3 T13: -0.0257 T23: -0.0436 REMARK 3 L TENSOR REMARK 3 L11: 1.5804 L22: 1.2507 REMARK 3 L33: 2.1154 L12: -0.5035 REMARK 3 L13: 0.1396 L23: 0.0389 REMARK 3 S TENSOR REMARK 3 S11: 0.1520 S12: -0.0483 S13: -0.1349 REMARK 3 S21: -0.0279 S22: -0.0604 S23: -0.1547 REMARK 3 S31: 0.1830 S32: 0.0496 S33: -0.1174 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 146 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.3121 16.5204 16.9070 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.2026 REMARK 3 T33: 0.1558 T12: 0.0050 REMARK 3 T13: -0.0179 T23: 0.0583 REMARK 3 L TENSOR REMARK 3 L11: 0.8803 L22: 1.1833 REMARK 3 L33: 0.8224 L12: 0.2908 REMARK 3 L13: -0.2043 L23: -0.3822 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: -0.1460 S13: -0.0408 REMARK 3 S21: 0.0171 S22: 0.0637 S23: 0.1490 REMARK 3 S31: 0.0054 S32: -0.1493 S33: -0.1143 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -1 THROUGH 26 ) REMARK 3 ORIGIN FOR THE GROUP (A): 34.9961 -6.2622 1.0382 REMARK 3 T TENSOR REMARK 3 T11: 0.3392 T22: 0.2663 REMARK 3 T33: 0.2406 T12: -0.0403 REMARK 3 T13: -0.0252 T23: 0.0463 REMARK 3 L TENSOR REMARK 3 L11: 3.1830 L22: 0.9354 REMARK 3 L33: 0.3776 L12: 1.5852 REMARK 3 L13: -0.4063 L23: -0.3915 REMARK 3 S TENSOR REMARK 3 S11: -0.0991 S12: 0.1777 S13: -0.2328 REMARK 3 S21: -0.0588 S22: 0.1013 S23: 0.0385 REMARK 3 S31: 0.0684 S32: -0.0212 S33: 0.0271 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 27 THROUGH 57 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1936 -5.9328 16.5132 REMARK 3 T TENSOR REMARK 3 T11: 0.2065 T22: 0.2444 REMARK 3 T33: 0.3204 T12: -0.0231 REMARK 3 T13: -0.0667 T23: 0.1247 REMARK 3 L TENSOR REMARK 3 L11: 0.7700 L22: 0.8006 REMARK 3 L33: 0.7772 L12: 0.0031 REMARK 3 L13: 0.0920 L23: -0.4963 REMARK 3 S TENSOR REMARK 3 S11: -0.0907 S12: -0.0281 S13: -0.0542 REMARK 3 S21: -0.1326 S22: 0.1665 S23: -0.0577 REMARK 3 S31: 0.1155 S32: -0.0655 S33: -0.0705 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 58 THROUGH 102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 44.9146 3.0695 24.3990 REMARK 3 T TENSOR REMARK 3 T11: 0.2817 T22: 0.3093 REMARK 3 T33: 0.2429 T12: 0.0628 REMARK 3 T13: -0.0514 T23: 0.0624 REMARK 3 L TENSOR REMARK 3 L11: 3.3575 L22: 1.0720 REMARK 3 L33: 1.1272 L12: 1.1086 REMARK 3 L13: -1.0043 L23: -0.3634 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: -0.1494 S13: 0.3931 REMARK 3 S21: 0.0328 S22: 0.0436 S23: 0.2687 REMARK 3 S31: -0.2563 S32: -0.0916 S33: -0.0623 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 103 THROUGH 145 ) REMARK 3 ORIGIN FOR THE GROUP (A): 45.0437 3.4149 9.8351 REMARK 3 T TENSOR REMARK 3 T11: 0.2706 T22: 0.2422 REMARK 3 T33: 0.2129 T12: -0.0215 REMARK 3 T13: -0.0195 T23: 0.0888 REMARK 3 L TENSOR REMARK 3 L11: 1.5846 L22: 1.0044 REMARK 3 L33: 2.1012 L12: -0.3175 REMARK 3 L13: 0.2558 L23: -0.2831 REMARK 3 S TENSOR REMARK 3 S11: -0.0179 S12: -0.1227 S13: -0.0897 REMARK 3 S21: 0.0380 S22: -0.0687 S23: -0.0856 REMARK 3 S31: 0.0953 S32: -0.0054 S33: 0.1181 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 146 THROUGH 321 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6239 -12.1904 19.2186 REMARK 3 T TENSOR REMARK 3 T11: 0.2516 T22: 0.1920 REMARK 3 T33: 0.2464 T12: -0.0051 REMARK 3 T13: -0.0347 T23: 0.0946 REMARK 3 L TENSOR REMARK 3 L11: 1.0733 L22: 0.5612 REMARK 3 L33: 1.1135 L12: 0.0908 REMARK 3 L13: 0.1746 L23: -0.1814 REMARK 3 S TENSOR REMARK 3 S11: -0.0002 S12: -0.1022 S13: -0.1639 REMARK 3 S21: -0.1007 S22: 0.0694 S23: 0.1094 REMARK 3 S31: 0.2141 S32: -0.0586 S33: -0.0623 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PIN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9184 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.21, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 49.778 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.09400 REMARK 200 FOR THE DATA SET : 10.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.67400 REMARK 200 R SYM FOR SHELL (I) : 0.67400 REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: REFMAC REMARK 200 STARTING MODEL: PDB ENTRY 4PIM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.19 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.6 M SODIUM PHOSPHATE, 0.4 M REMARK 280 DIPOTASSIUM PHOSPHATE, 0.1 M SODIUM PHOSPHATE CITRATE, PH 4.2, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.99400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.90600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.37850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.90600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.99400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.37850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 GLY A 88 REMARK 465 THR A 89 REMARK 465 GLY B 88 REMARK 465 THR B 89 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 91 CG CD OE1 OE2 REMARK 470 ARG A 94 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 94 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 HZ3 LYS A 148 O2 PO4 B 402 3655 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 39 53.97 -101.16 REMARK 500 ASP A 207 55.71 -156.41 REMARK 500 TYR B 39 56.83 -101.57 REMARK 500 GLU B 144 -41.62 -135.68 REMARK 500 LYS B 197 -169.77 -160.90 REMARK 500 ASP B 207 57.05 -159.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AVI A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue AVI B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PIM RELATED DB: PDB REMARK 900 EGTD, APO FORM REMARK 900 RELATED ID: 4PIO RELATED DB: PDB REMARK 900 EGTD IN COMPLEX WITH N,N-DIMETHYLHISTIDINE AND SAH REMARK 900 RELATED ID: 4PIP RELATED DB: PDB REMARK 900 EGTD DOUBLE MUTANT (M252V, E282A) HYOA IN COMPLEX WITH TRYPTOPHAN REMARK 900 AND SAH DBREF 4PIN A 1 321 UNP A0R5M8 EGTD_MYCS2 1 321 DBREF 4PIN B 1 321 UNP A0R5M8 EGTD_MYCS2 1 321 SEQADV 4PIN GLY A -1 UNP A0R5M8 EXPRESSION TAG SEQADV 4PIN HIS A 0 UNP A0R5M8 EXPRESSION TAG SEQADV 4PIN ALA A 2 UNP A0R5M8 THR 2 ENGINEERED MUTATION SEQADV 4PIN THR A 29 UNP A0R5M8 ALA 29 ENGINEERED MUTATION SEQADV 4PIN GLN A 30 UNP A0R5M8 PRO 30 ENGINEERED MUTATION SEQADV 4PIN SER A 75 UNP A0R5M8 ALA 75 ENGINEERED MUTATION SEQADV 4PIN GLY B -1 UNP A0R5M8 EXPRESSION TAG SEQADV 4PIN HIS B 0 UNP A0R5M8 EXPRESSION TAG SEQADV 4PIN ALA B 2 UNP A0R5M8 THR 2 ENGINEERED MUTATION SEQADV 4PIN THR B 29 UNP A0R5M8 ALA 29 ENGINEERED MUTATION SEQADV 4PIN GLN B 30 UNP A0R5M8 PRO 30 ENGINEERED MUTATION SEQADV 4PIN SER B 75 UNP A0R5M8 ALA 75 ENGINEERED MUTATION SEQRES 1 A 323 GLY HIS MET ALA LEU SER LEU ALA ASN TYR LEU ALA ALA SEQRES 2 A 323 ASP SER ALA ALA GLU ALA LEU ARG ARG ASP VAL ARG ALA SEQRES 3 A 323 GLY LEU THR ALA THR GLN LYS SER LEU PRO PRO LYS TRP SEQRES 4 A 323 PHE TYR ASP ALA VAL GLY SER ASP LEU PHE ASP GLN ILE SEQRES 5 A 323 THR ARG LEU PRO GLU TYR TYR PRO THR ARG THR GLU ALA SEQRES 6 A 323 GLN ILE LEU ARG THR ARG SER ALA GLU ILE ILE SER ALA SEQRES 7 A 323 ALA GLY ALA ASP THR LEU VAL GLU LEU GLY SER GLY THR SEQRES 8 A 323 SER GLU LYS THR ARG MET LEU LEU ASP ALA MET ARG ASP SEQRES 9 A 323 ALA GLU LEU LEU ARG ARG PHE ILE PRO PHE ASP VAL ASP SEQRES 10 A 323 ALA GLY VAL LEU ARG SER ALA GLY ALA ALA ILE GLY ALA SEQRES 11 A 323 GLU TYR PRO GLY ILE GLU ILE ASP ALA VAL CYS GLY ASP SEQRES 12 A 323 PHE GLU GLU HIS LEU GLY LYS ILE PRO HIS VAL GLY ARG SEQRES 13 A 323 ARG LEU VAL VAL PHE LEU GLY SER THR ILE GLY ASN LEU SEQRES 14 A 323 THR PRO ALA PRO ARG ALA GLU PHE LEU SER THR LEU ALA SEQRES 15 A 323 ASP THR LEU GLN PRO GLY ASP SER LEU LEU LEU GLY THR SEQRES 16 A 323 ASP LEU VAL LYS ASP THR GLY ARG LEU VAL ARG ALA TYR SEQRES 17 A 323 ASP ASP ALA ALA GLY VAL THR ALA ALA PHE ASN ARG ASN SEQRES 18 A 323 VAL LEU ALA VAL VAL ASN ARG GLU LEU SER ALA ASP PHE SEQRES 19 A 323 ASP LEU ASP ALA PHE GLU HIS VAL ALA LYS TRP ASN SER SEQRES 20 A 323 ASP GLU GLU ARG ILE GLU MET TRP LEU ARG ALA ARG THR SEQRES 21 A 323 ALA GLN HIS VAL ARG VAL ALA ALA LEU ASP LEU GLU VAL SEQRES 22 A 323 ASP PHE ALA ALA GLY GLU GLU MET LEU THR GLU VAL SER SEQRES 23 A 323 CYS LYS PHE ARG PRO GLU ASN VAL VAL ALA GLU LEU ALA SEQRES 24 A 323 GLU ALA GLY LEU ARG GLN THR HIS TRP TRP THR ASP PRO SEQRES 25 A 323 ALA GLY ASP PHE GLY LEU SER LEU ALA VAL ARG SEQRES 1 B 323 GLY HIS MET ALA LEU SER LEU ALA ASN TYR LEU ALA ALA SEQRES 2 B 323 ASP SER ALA ALA GLU ALA LEU ARG ARG ASP VAL ARG ALA SEQRES 3 B 323 GLY LEU THR ALA THR GLN LYS SER LEU PRO PRO LYS TRP SEQRES 4 B 323 PHE TYR ASP ALA VAL GLY SER ASP LEU PHE ASP GLN ILE SEQRES 5 B 323 THR ARG LEU PRO GLU TYR TYR PRO THR ARG THR GLU ALA SEQRES 6 B 323 GLN ILE LEU ARG THR ARG SER ALA GLU ILE ILE SER ALA SEQRES 7 B 323 ALA GLY ALA ASP THR LEU VAL GLU LEU GLY SER GLY THR SEQRES 8 B 323 SER GLU LYS THR ARG MET LEU LEU ASP ALA MET ARG ASP SEQRES 9 B 323 ALA GLU LEU LEU ARG ARG PHE ILE PRO PHE ASP VAL ASP SEQRES 10 B 323 ALA GLY VAL LEU ARG SER ALA GLY ALA ALA ILE GLY ALA SEQRES 11 B 323 GLU TYR PRO GLY ILE GLU ILE ASP ALA VAL CYS GLY ASP SEQRES 12 B 323 PHE GLU GLU HIS LEU GLY LYS ILE PRO HIS VAL GLY ARG SEQRES 13 B 323 ARG LEU VAL VAL PHE LEU GLY SER THR ILE GLY ASN LEU SEQRES 14 B 323 THR PRO ALA PRO ARG ALA GLU PHE LEU SER THR LEU ALA SEQRES 15 B 323 ASP THR LEU GLN PRO GLY ASP SER LEU LEU LEU GLY THR SEQRES 16 B 323 ASP LEU VAL LYS ASP THR GLY ARG LEU VAL ARG ALA TYR SEQRES 17 B 323 ASP ASP ALA ALA GLY VAL THR ALA ALA PHE ASN ARG ASN SEQRES 18 B 323 VAL LEU ALA VAL VAL ASN ARG GLU LEU SER ALA ASP PHE SEQRES 19 B 323 ASP LEU ASP ALA PHE GLU HIS VAL ALA LYS TRP ASN SER SEQRES 20 B 323 ASP GLU GLU ARG ILE GLU MET TRP LEU ARG ALA ARG THR SEQRES 21 B 323 ALA GLN HIS VAL ARG VAL ALA ALA LEU ASP LEU GLU VAL SEQRES 22 B 323 ASP PHE ALA ALA GLY GLU GLU MET LEU THR GLU VAL SER SEQRES 23 B 323 CYS LYS PHE ARG PRO GLU ASN VAL VAL ALA GLU LEU ALA SEQRES 24 B 323 GLU ALA GLY LEU ARG GLN THR HIS TRP TRP THR ASP PRO SEQRES 25 B 323 ALA GLY ASP PHE GLY LEU SER LEU ALA VAL ARG HET AVI A 401 26 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET AVI B 401 26 HET PO4 B 402 5 HET PO4 B 403 5 HETNAM AVI N,N-DIMETHYL-L-HISTIDINE HETNAM PO4 PHOSPHATE ION FORMUL 3 AVI 2(C8 H13 N3 O2) FORMUL 4 PO4 5(O4 P 3-) FORMUL 10 HOH *680(H2 O) HELIX 1 AA1 ALA A 10 ALA A 28 1 19 HELIX 2 AA2 PRO A 34 TYR A 39 5 6 HELIX 3 AA3 ASP A 40 THR A 51 1 12 HELIX 4 AA4 TYR A 57 GLY A 78 1 22 HELIX 5 AA5 GLU A 91 ALA A 103 1 13 HELIX 6 AA6 ASP A 115 TYR A 130 1 16 HELIX 7 AA7 HIS A 145 ILE A 149 5 5 HELIX 8 AA8 SER A 162 LEU A 167 5 6 HELIX 9 AA9 THR A 168 THR A 182 1 15 HELIX 10 AB1 ASP A 198 ALA A 205 1 8 HELIX 11 AB2 GLY A 211 SER A 229 1 19 HELIX 12 AB3 ASP A 233 ASP A 235 5 3 HELIX 13 AB4 ALA A 265 ASP A 268 5 4 HELIX 14 AB5 ARG A 288 ALA A 299 1 12 HELIX 15 AB6 ASP B 12 THR B 27 1 16 HELIX 16 AB7 PRO B 34 TYR B 39 5 6 HELIX 17 AB8 ASP B 40 THR B 51 1 12 HELIX 18 AB9 TYR B 57 GLY B 78 1 22 HELIX 19 AC1 GLU B 91 ALA B 103 1 13 HELIX 20 AC2 ASP B 115 TYR B 130 1 16 HELIX 21 AC3 HIS B 145 ILE B 149 5 5 HELIX 22 AC4 SER B 162 LEU B 167 5 6 HELIX 23 AC5 THR B 168 THR B 182 1 15 HELIX 24 AC6 ASP B 198 TYR B 206 1 9 HELIX 25 AC7 GLY B 211 SER B 229 1 19 HELIX 26 AC8 ASP B 233 ASP B 235 5 3 HELIX 27 AC9 ALA B 265 ASP B 268 5 4 HELIX 28 AD1 ARG B 288 GLY B 300 1 13 SHEET 1 AA1 8 SER A 4 ASN A 7 0 SHEET 2 AA1 8 GLU A 134 CYS A 139 1 O ALA A 137 N SER A 4 SHEET 3 AA1 8 ARG A 108 ASP A 113 1 N PHE A 109 O GLU A 134 SHEET 4 AA1 8 THR A 81 LEU A 85 1 N LEU A 82 O ILE A 110 SHEET 5 AA1 8 ARG A 155 PHE A 159 1 O LEU A 156 N THR A 81 SHEET 6 AA1 8 SER A 188 ASP A 194 1 O SER A 188 N VAL A 157 SHEET 7 AA1 8 PHE A 314 VAL A 320 -1 O GLY A 315 N THR A 193 SHEET 8 AA1 8 ARG A 302 THR A 308 -1 N TRP A 307 O LEU A 316 SHEET 1 AA2 3 PHE A 237 ASN A 244 0 SHEET 2 AA2 3 ARG A 249 ALA A 256 -1 O TRP A 253 N VAL A 240 SHEET 3 AA2 3 GLU A 278 CYS A 285 -1 O SER A 284 N ILE A 250 SHEET 1 AA3 2 GLN A 260 VAL A 264 0 SHEET 2 AA3 2 LEU A 269 PHE A 273 -1 O VAL A 271 N VAL A 262 SHEET 1 AA4 8 SER B 4 ASN B 7 0 SHEET 2 AA4 8 GLU B 134 CYS B 139 1 O CYS B 139 N ALA B 6 SHEET 3 AA4 8 ARG B 108 ASP B 113 1 N PHE B 109 O GLU B 134 SHEET 4 AA4 8 THR B 81 LEU B 85 1 N LEU B 82 O ILE B 110 SHEET 5 AA4 8 ARG B 155 PHE B 159 1 O LEU B 156 N THR B 81 SHEET 6 AA4 8 SER B 188 ASP B 194 1 O LEU B 190 N VAL B 157 SHEET 7 AA4 8 PHE B 314 VAL B 320 -1 O ALA B 319 N LEU B 189 SHEET 8 AA4 8 ARG B 302 THR B 308 -1 N THR B 304 O LEU B 318 SHEET 1 AA5 3 PHE B 237 ASN B 244 0 SHEET 2 AA5 3 ARG B 249 ALA B 256 -1 O TRP B 253 N VAL B 240 SHEET 3 AA5 3 GLU B 278 CYS B 285 -1 O SER B 284 N ILE B 250 SHEET 1 AA6 2 GLN B 260 VAL B 264 0 SHEET 2 AA6 2 LEU B 269 PHE B 273 -1 O PHE B 273 N GLN B 260 SITE 1 AC1 11 TYR A 39 PHE A 47 TYR A 56 GLY A 161 SITE 2 AC1 11 THR A 163 ASN A 166 TYR A 206 GLU A 282 SITE 3 AC1 11 SER A 284 HOH A 601 HOH A 631 SITE 1 AC2 6 HOH A 508 GLU B 72 SER B 75 ALA B 76 SITE 2 AC2 6 HIS B 305 PO4 B 402 SITE 1 AC3 2 ARG A 19 ARG A 23 SITE 1 AC4 6 ASP A 233 ASP A 235 ALA A 236 HOH A 700 SITE 2 AC4 6 HOH A 799 HOH A 833 SITE 1 AC5 9 TYR B 39 TYR B 56 GLY B 161 ASN B 166 SITE 2 AC5 9 TYR B 206 GLU B 282 SER B 284 HOH B 582 SITE 3 AC5 9 HOH B 623 SITE 1 AC6 4 TYR A 8 LYS A 148 PO4 A 402 HOH B 501 SITE 1 AC7 4 ASP B 80 ARG B 107 ARG B 108 GLY B 153 CRYST1 71.988 74.757 137.812 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013891 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007256 0.00000