HEADER HYDROLASE/HYDROLASE INHIBITOR 11-MAY-14 4PJ2 TITLE CRYSTAL STRUCTURE OF AEROMONAS HYDROPHILA PLII IN COMPLEX WITH TITLE 2 MERETRIX LUSORIA LYSOZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE EXPORTED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-145; COMPND 5 SYNONYM: PERIPLASMIC LYSOZYME INHIBITOR OF I-TYPE LYSOZYME; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: LYSOZYME; COMPND 9 CHAIN: C, D; COMPND 10 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE; COMPND 11 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROMONAS HYDROPHILA SUBSP. HYDROPHILA; SOURCE 3 ORGANISM_TAXID: 380703; SOURCE 4 STRAIN: ATCC 7966 / NCIB 9240; SOURCE 5 GENE: AHA_1205; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MERETRIX LUSORIA; SOURCE 11 ORGANISM_COMMON: HARD CLAM; SOURCE 12 ORGANISM_TAXID: 74491 KEYWDS LYSOZYME, LYSOZYME INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.LEYSEN,J.M.VAN HERREWEGHE,K.YONEDA,M.OGATA,T.USUI,C.W.MICHIELS, AUTHOR 2 T.ARAKI,S.V.STRELKOV REVDAT 3 27-DEC-23 4PJ2 1 SOURCE REMARK REVDAT 2 25-FEB-15 4PJ2 1 JRNL REVDAT 1 11-FEB-15 4PJ2 0 JRNL AUTH S.LEYSEN,J.M.VAN HERREWEGHE,K.YONEDA,M.OGATA,T.USUI,T.ARAKI, JRNL AUTH 2 C.W.MICHIELS,S.V.STRELKOV JRNL TITL THE STRUCTURE OF THE PROTEINACEOUS INHIBITOR PLII FROM JRNL TITL 2 AEROMONAS HYDROPHILA IN COMPLEX WITH ITS TARGET LYSOZYME. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 71 344 2015 JRNL REFN ESSN 1399-0047 JRNL PMID 25664745 JRNL DOI 10.1107/S1399004714025863 REMARK 2 REMARK 2 RESOLUTION. 1.24 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.4_1496) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.24 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.80 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 144031 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.168 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1457 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.8400 - 2.6702 0.99 15013 154 0.1558 0.1621 REMARK 3 2 2.6702 - 2.1194 0.98 14741 149 0.1421 0.1552 REMARK 3 3 2.1194 - 1.8515 0.98 14601 146 0.1213 0.1659 REMARK 3 4 1.8515 - 1.6822 0.97 14424 156 0.1211 0.1541 REMARK 3 5 1.6822 - 1.5616 0.96 14388 143 0.1261 0.1804 REMARK 3 6 1.5616 - 1.4695 0.96 14238 133 0.1455 0.1668 REMARK 3 7 1.4695 - 1.3959 0.95 14158 163 0.1573 0.1835 REMARK 3 8 1.3959 - 1.3352 0.94 14016 131 0.1780 0.2051 REMARK 3 9 1.3352 - 1.2838 0.93 13866 140 0.2190 0.2240 REMARK 3 10 1.2838 - 1.2400 0.88 13129 142 0.2680 0.2884 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 4017 REMARK 3 ANGLE : 1.289 5445 REMARK 3 CHIRALITY : 0.074 574 REMARK 3 PLANARITY : 0.006 721 REMARK 3 DIHEDRAL : 14.059 1545 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PJ2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201283. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 144102 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.240 REMARK 200 RESOLUTION RANGE LOW (A) : 47.800 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M DL-MALIC ACID/MES/TRIS-BASE REMARK 280 COCKTAIL BUFFER AT PH 5.0 AND 25% W/V PEG 1,500, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.83350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11440 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 ALA A 20 REMARK 465 ASP A 21 REMARK 465 PRO A 143 REMARK 465 ARG A 144 REMARK 465 ASP A 145 REMARK 465 LEU A 146 REMARK 465 GLU A 147 REMARK 465 HIS A 148 REMARK 465 HIS A 149 REMARK 465 HIS A 150 REMARK 465 HIS A 151 REMARK 465 HIS A 152 REMARK 465 HIS A 153 REMARK 465 MET B 19 REMARK 465 ALA B 20 REMARK 465 ASP B 21 REMARK 465 GLN B 118 REMARK 465 GLU B 119 REMARK 465 GLU B 147 REMARK 465 HIS B 148 REMARK 465 HIS B 149 REMARK 465 HIS B 150 REMARK 465 HIS B 151 REMARK 465 HIS B 152 REMARK 465 HIS B 153 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 SER C 53 CA CB OG REMARK 480 SER D 104 CA CB OG REMARK 480 THR D 105 CA CB OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HZ2 LYS B 71 O HOH B 302 1.44 REMARK 500 HZ3 LYS C 16 O HOH C 204 1.48 REMARK 500 HD1 HIS C 119 O HOH C 205 1.57 REMARK 500 HG SER C 34 O HOH C 288 1.59 REMARK 500 O HOH C 330 O HOH C 360 1.81 REMARK 500 O HOH A 442 O HOH A 447 1.84 REMARK 500 O HOH A 413 O HOH B 335 1.86 REMARK 500 O HOH B 327 O HOH B 439 1.86 REMARK 500 O HOH C 294 O HOH C 323 1.87 REMARK 500 O HOH B 454 O HOH B 456 1.88 REMARK 500 O HOH C 364 O HOH C 372 1.89 REMARK 500 O HOH A 436 O HOH A 441 1.90 REMARK 500 O HOH A 437 O HOH A 438 1.91 REMARK 500 O HOH B 439 O HOH B 460 1.93 REMARK 500 O HOH C 202 O HOH C 220 1.95 REMARK 500 O LYS D 16 O HOH D 201 1.98 REMARK 500 O HOH C 351 O HOH C 352 2.00 REMARK 500 O HOH D 306 O HOH D 307 2.01 REMARK 500 O HOH B 384 O HOH B 401 2.01 REMARK 500 O HOH B 444 O HOH B 455 2.01 REMARK 500 O HOH A 395 O HOH A 401 2.04 REMARK 500 O HOH B 404 O HOH B 411 2.06 REMARK 500 OE1 GLN A 26 O HOH A 400 2.07 REMARK 500 O LYS B 91 O HOH B 301 2.07 REMARK 500 O GLY A 22 O HOH A 405 2.08 REMARK 500 O ARG D 9 O HOH D 301 2.09 REMARK 500 O HOH A 448 O HOH A 449 2.10 REMARK 500 O HOH B 447 O HOH B 453 2.11 REMARK 500 O HOH B 430 O HOH B 431 2.12 REMARK 500 NH1 ARG C 85 O HOH C 201 2.13 REMARK 500 O HOH A 304 O HOH A 335 2.13 REMARK 500 N GLY B 22 O HOH B 458 2.14 REMARK 500 N CYS D 13 O HOH D 301 2.14 REMARK 500 O HOH B 315 O HOH B 413 2.15 REMARK 500 OD1 ASP B 122 O HOH B 302 2.17 REMARK 500 O HOH A 366 O HOH A 410 2.17 REMARK 500 O HOH B 409 O HOH B 438 2.17 REMARK 500 O HOH C 363 O HOH C 370 2.18 REMARK 500 O HOH B 432 O HOH B 433 2.18 REMARK 500 O HOH A 414 O HOH A 416 2.18 REMARK 500 O HOH C 296 O HOH C 358 2.18 REMARK 500 SG CYS D 118 O HOH D 302 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 338 O HOH D 239 2456 1.94 REMARK 500 O HOH A 332 O HOH D 212 2456 1.95 REMARK 500 O HOH A 303 O HOH D 223 1455 1.96 REMARK 500 O HOH B 338 O HOH C 221 2355 2.12 REMARK 500 O HOH A 303 O HOH D 240 1455 2.15 REMARK 500 O HOH B 337 O HOH C 325 1655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 76 74.30 -100.27 REMARK 500 ASP B 76 73.75 -101.41 REMARK 500 LEU B 115 52.00 -116.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 448 DISTANCE = 7.63 ANGSTROMS REMARK 525 HOH A 449 DISTANCE = 7.01 ANGSTROMS REMARK 525 HOH B 435 DISTANCE = 6.02 ANGSTROMS REMARK 525 HOH C 371 DISTANCE = 5.97 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 203 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 86 OD1 REMARK 620 2 ASN A 88 OD1 77.0 REMARK 620 3 ASP A 90 OD1 97.8 85.3 REMARK 620 4 GLN A 92 O 88.5 163.7 89.3 REMARK 620 5 GLU A 94 OE1 88.0 85.0 167.3 102.2 REMARK 620 6 GLU A 94 OE2 140.4 96.6 120.9 99.3 52.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 201 DBREF 4PJ2 A 20 145 UNP A0KHJ5 A0KHJ5_AERHH 20 145 DBREF 4PJ2 B 20 145 UNP A0KHJ5 A0KHJ5_AERHH 20 145 DBREF 4PJ2 C 1 122 UNP P86383 LYS_MERLU 1 122 DBREF 4PJ2 D 1 122 UNP P86383 LYS_MERLU 1 122 SEQADV 4PJ2 MET A 19 UNP A0KHJ5 INITIATING METHIONINE SEQADV 4PJ2 LEU A 146 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 GLU A 147 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS A 148 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS A 149 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS A 150 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS A 151 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS A 152 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS A 153 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 MET B 19 UNP A0KHJ5 INITIATING METHIONINE SEQADV 4PJ2 LEU B 146 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 GLU B 147 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS B 148 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS B 149 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS B 150 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS B 151 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS B 152 UNP A0KHJ5 EXPRESSION TAG SEQADV 4PJ2 HIS B 153 UNP A0KHJ5 EXPRESSION TAG SEQRES 1 A 135 MET ALA ASP GLY PHE PHE LYS GLN LEU THR LEU PRO SER SEQRES 2 A 135 GLY GLN VAL VAL THR VAL SER GLU GLY ARG GLY GLU PRO SEQRES 3 A 135 ALA SER THR GLY SER TYR ASP VAL ARG LEU TYR SER GLY SEQRES 4 A 135 ALA ASN PRO GLN PHE PRO LEU ASP GLN PHE ILE ASP GLY SEQRES 5 A 135 LYS VAL LEU PRO ARG ASP GLY SER ILE LYS GLU LEU LYS SEQRES 6 A 135 LEU LEU ASP LEU ASN GLY ASP LYS GLN PRO GLU LEU ILE SEQRES 7 A 135 VAL VAL VAL GLU SER ALA GLY SER GLY SER TYR LEU SER SEQRES 8 A 135 ALA ASP ALA PHE THR LEU ASN PRO GLN GLU GLY LEU ASP SEQRES 9 A 135 SER PHE ASN HIS VAL GLU GLY LEU ALA PRO ASN GLU ASP SEQRES 10 A 135 VAL ILE GLN ALA LEU LYS THR PRO ARG ASP LEU GLU HIS SEQRES 11 A 135 HIS HIS HIS HIS HIS SEQRES 1 B 135 MET ALA ASP GLY PHE PHE LYS GLN LEU THR LEU PRO SER SEQRES 2 B 135 GLY GLN VAL VAL THR VAL SER GLU GLY ARG GLY GLU PRO SEQRES 3 B 135 ALA SER THR GLY SER TYR ASP VAL ARG LEU TYR SER GLY SEQRES 4 B 135 ALA ASN PRO GLN PHE PRO LEU ASP GLN PHE ILE ASP GLY SEQRES 5 B 135 LYS VAL LEU PRO ARG ASP GLY SER ILE LYS GLU LEU LYS SEQRES 6 B 135 LEU LEU ASP LEU ASN GLY ASP LYS GLN PRO GLU LEU ILE SEQRES 7 B 135 VAL VAL VAL GLU SER ALA GLY SER GLY SER TYR LEU SER SEQRES 8 B 135 ALA ASP ALA PHE THR LEU ASN PRO GLN GLU GLY LEU ASP SEQRES 9 B 135 SER PHE ASN HIS VAL GLU GLY LEU ALA PRO ASN GLU ASP SEQRES 10 B 135 VAL ILE GLN ALA LEU LYS THR PRO ARG ASP LEU GLU HIS SEQRES 11 B 135 HIS HIS HIS HIS HIS SEQRES 1 C 122 PHE ALA GLY GLY ILE VAL SER GLN ARG CYS LEU SER CYS SEQRES 2 C 122 ILE CYS LYS MET GLU SER GLY CYS ARG ASN VAL GLY CYS SEQRES 3 C 122 LYS MET ASP MET GLY SER LEU SER CYS GLY TYR PHE GLN SEQRES 4 C 122 ILE LYS GLU ALA TYR TRP ILE ASP CYS GLY ARG PRO GLY SEQRES 5 C 122 SER SER TRP LYS SER CYS ALA ALA SER SER TYR CYS ALA SEQRES 6 C 122 SER LEU CYS VAL GLN ASN TYR MET LYS ARG TYR ALA LYS SEQRES 7 C 122 TRP ALA GLY CYS PRO LEU ARG CYS GLU GLY PHE ALA ARG SEQRES 8 C 122 GLU HIS ASN GLY GLY PRO ARG GLY CYS LYS LYS GLY SER SEQRES 9 C 122 THR ILE GLY TYR TRP ASN ARG LEU GLN LYS ILE SER GLY SEQRES 10 C 122 CYS HIS GLY VAL GLN SEQRES 1 D 122 PHE ALA GLY GLY ILE VAL SER GLN ARG CYS LEU SER CYS SEQRES 2 D 122 ILE CYS LYS MET GLU SER GLY CYS ARG ASN VAL GLY CYS SEQRES 3 D 122 LYS MET ASP MET GLY SER LEU SER CYS GLY TYR PHE GLN SEQRES 4 D 122 ILE LYS GLU ALA TYR TRP ILE ASP CYS GLY ARG PRO GLY SEQRES 5 D 122 SER SER TRP LYS SER CYS ALA ALA SER SER TYR CYS ALA SEQRES 6 D 122 SER LEU CYS VAL GLN ASN TYR MET LYS ARG TYR ALA LYS SEQRES 7 D 122 TRP ALA GLY CYS PRO LEU ARG CYS GLU GLY PHE ALA ARG SEQRES 8 D 122 GLU HIS ASN GLY GLY PRO ARG GLY CYS LYS LYS GLY SER SEQRES 9 D 122 THR ILE GLY TYR TRP ASN ARG LEU GLN LYS ILE SER GLY SEQRES 10 D 122 CYS HIS GLY VAL GLN HET GOL A 201 14 HET GOL A 202 14 HET MG A 203 1 HET MG B 201 1 HETNAM GOL GLYCEROL HETNAM MG MAGNESIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 MG 2(MG 2+) FORMUL 9 HOH *605(H2 O) HELIX 1 AA1 ASP A 135 THR A 142 1 8 HELIX 2 AA2 ASP B 135 THR B 142 1 8 HELIX 3 AA3 SER C 7 GLY C 20 1 14 HELIX 4 AA4 GLU C 42 CYS C 48 1 7 HELIX 5 AA5 SER C 54 ALA C 60 1 7 HELIX 6 AA6 SER C 61 ALA C 77 1 17 HELIX 7 AA7 LYS C 78 GLY C 81 5 4 HELIX 8 AA8 ARG C 85 GLY C 96 1 12 HELIX 9 AA9 ARG C 98 SER C 104 5 7 HELIX 10 AB1 THR C 105 GLN C 113 1 9 HELIX 11 AB2 SER D 7 GLY D 20 1 14 HELIX 12 AB3 GLU D 42 CYS D 48 1 7 HELIX 13 AB4 SER D 54 ALA D 60 1 7 HELIX 14 AB5 SER D 61 ALA D 77 1 17 HELIX 15 AB6 LYS D 78 GLY D 81 5 4 HELIX 16 AB7 ARG D 85 GLY D 96 1 12 HELIX 17 AB8 ARG D 98 SER D 104 5 7 HELIX 18 AB9 THR D 105 GLN D 113 1 9 SHEET 1 AA1 4 PHE A 24 THR A 28 0 SHEET 2 AA1 4 VAL A 34 GLU A 39 -1 O VAL A 35 N LEU A 27 SHEET 3 AA1 4 GLY A 48 TYR A 55 -1 O TYR A 55 N VAL A 34 SHEET 4 AA1 4 PHE A 67 ARG A 75 -1 O ASP A 69 N LEU A 54 SHEET 1 AA2 4 SER A 78 LEU A 85 0 SHEET 2 AA2 4 GLU A 94 GLU A 100 -1 O VAL A 98 N LYS A 80 SHEET 3 AA2 4 LEU A 108 ASN A 116 -1 O SER A 109 N VAL A 99 SHEET 4 AA2 4 GLY A 120 LEU A 130 -1 O PHE A 124 N ALA A 112 SHEET 1 AA3 4 PHE B 24 THR B 28 0 SHEET 2 AA3 4 VAL B 34 GLU B 39 -1 O VAL B 35 N LEU B 27 SHEET 3 AA3 4 GLY B 48 TYR B 55 -1 O TYR B 55 N VAL B 34 SHEET 4 AA3 4 PHE B 67 ARG B 75 -1 O ASP B 69 N LEU B 54 SHEET 1 AA4 4 SER B 78 LEU B 85 0 SHEET 2 AA4 4 GLU B 94 GLU B 100 -1 O GLU B 94 N LEU B 85 SHEET 3 AA4 4 LEU B 108 LEU B 115 -1 O PHE B 113 N LEU B 95 SHEET 4 AA4 4 LEU B 121 LEU B 130 -1 O ASP B 122 N THR B 114 SHEET 1 AA5 3 CYS C 26 LYS C 27 0 SHEET 2 AA5 3 SER C 34 CYS C 35 -1 O SER C 34 N LYS C 27 SHEET 3 AA5 3 ILE C 40 LYS C 41 -1 O ILE C 40 N CYS C 35 SHEET 1 AA6 3 CYS D 26 ASP D 29 0 SHEET 2 AA6 3 SER D 32 CYS D 35 -1 O SER D 34 N LYS D 27 SHEET 3 AA6 3 ILE D 40 LYS D 41 -1 O ILE D 40 N CYS D 35 SSBOND 1 CYS C 10 CYS C 86 1555 1555 2.07 SSBOND 2 CYS C 13 CYS C 118 1555 1555 2.05 SSBOND 3 CYS C 15 CYS C 21 1555 1555 2.06 SSBOND 4 CYS C 26 CYS C 35 1555 1555 2.06 SSBOND 5 CYS C 48 CYS C 68 1555 1555 2.06 SSBOND 6 CYS C 58 CYS C 64 1555 1555 2.15 SSBOND 7 CYS C 82 CYS C 100 1555 1555 2.04 SSBOND 8 CYS D 10 CYS D 86 1555 1555 2.07 SSBOND 9 CYS D 13 CYS D 118 1555 1555 2.03 SSBOND 10 CYS D 15 CYS D 21 1555 1555 2.06 SSBOND 11 CYS D 26 CYS D 35 1555 1555 2.04 SSBOND 12 CYS D 48 CYS D 68 1555 1555 2.04 SSBOND 13 CYS D 58 CYS D 64 1555 1555 2.07 SSBOND 14 CYS D 82 CYS D 100 1555 1555 2.04 LINK OD1 ASP A 86 MG MG A 203 1555 1555 2.42 LINK OD1 ASN A 88 MG MG A 203 1555 1555 2.30 LINK OD1 ASP A 90 MG MG A 203 1555 1555 2.24 LINK O GLN A 92 MG MG A 203 1555 1555 2.20 LINK OE1 GLU A 94 MG MG A 203 1555 1555 2.47 LINK OE2 GLU A 94 MG MG A 203 1555 1555 2.50 LINK MG MG B 201 O HOH B 301 1555 1555 2.80 SITE 1 AC1 11 SER A 38 ARG A 41 ASP A 51 ARG A 53 SITE 2 AC1 11 HOH A 348 HOH A 355 HOH A 415 SER B 38 SITE 3 AC1 11 ARG B 41 ASP B 51 ARG B 53 SITE 1 AC2 8 ASP A 65 GLN A 66 HOH A 352 HOH A 434 SITE 2 AC2 8 THR B 47 TYR C 76 TRP C 79 ALA C 80 SITE 1 AC3 5 ASP A 86 ASN A 88 ASP A 90 GLN A 92 SITE 2 AC3 5 GLU A 94 SITE 1 AC4 7 LEU B 29 PRO B 30 SER B 31 LYS B 91 SITE 2 AC4 7 GLN B 92 PRO B 93 HOH B 301 CRYST1 52.933 77.667 69.380 90.00 108.12 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018892 0.000000 0.006183 0.00000 SCALE2 0.000000 0.012875 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015166 0.00000