HEADER MOTOR PROTEIN 12-MAY-14 4PJK TITLE DICTY MYOSIN II R238E.E459R MUTANT (WITH ADP.PI) IN THE PI RELEASE TITLE 2 STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYOSIN-2 HEAVY CHAIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: MYOSIN II HEAVY CHAIN; COMPND 5 EC: 3.6.4.1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DICTYOSTELIUM DISCOIDEUM; SOURCE 3 ORGANISM_COMMON: SLIME MOLD; SOURCE 4 ORGANISM_TAXID: 44689; SOURCE 5 GENE: MHCA, DDB_G0286355; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS MOTOR DOMAIN MUTANT, MOTOR PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.ISABET,H.BENISTY,P.LLINAS,H.L.SWEENEY,A.HOUDUSSE REVDAT 4 20-DEC-23 4PJK 1 ATOM REVDAT 3 30-AUG-17 4PJK 1 LINK SITE ATOM REVDAT 2 30-MAR-16 4PJK 1 JRNL REVDAT 1 29-APR-15 4PJK 0 JRNL AUTH P.LLINAS,T.ISABET,L.SONG,V.ROPARS,B.ZONG,H.BENISTY,S.SIRIGU, JRNL AUTH 2 C.MORRIS,C.KIKUTI,D.SAFER,H.L.SWEENEY,A.HOUDUSSE JRNL TITL HOW ACTIN INITIATES THE MOTOR ACTIVITY OF MYOSIN. JRNL REF DEV.CELL V. 33 401 2015 JRNL REFN ISSN 1534-5807 JRNL PMID 25936506 JRNL DOI 10.1016/J.DEVCEL.2015.03.025 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.11.5 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 55100 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2755 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.21 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4021 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2277 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3820 REMARK 3 BIN R VALUE (WORKING SET) : 0.2268 REMARK 3 BIN FREE R VALUE : 0.2444 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 201 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5563 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 80 REMARK 3 SOLVENT ATOMS : 380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 44.17 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -7.83160 REMARK 3 B22 (A**2) : -3.88680 REMARK 3 B33 (A**2) : 11.71840 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.286 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.171 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.152 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.168 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.152 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 5773 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 7814 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2003 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 166 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 842 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 5773 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 761 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6872 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.03 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.99 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.03 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 21.8624 -37.3209 29.2205 REMARK 3 T TENSOR REMARK 3 T11: -0.1582 T22: -0.0776 REMARK 3 T33: -0.1477 T12: 0.0175 REMARK 3 T13: -0.0343 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 0.4964 L22: 0.6554 REMARK 3 L33: 1.5553 L12: -0.0621 REMARK 3 L13: 0.0652 L23: -0.2312 REMARK 3 S TENSOR REMARK 3 S11: 0.0594 S12: 0.0280 S13: 0.0696 REMARK 3 S21: -0.0771 S22: 0.0159 S23: -0.0247 REMARK 3 S31: 0.2419 S32: 0.1327 S33: -0.0754 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PJK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201415. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9801 REMARK 200 MONOCHROMATOR : SI III REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55100 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.410 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.99 REMARK 200 R MERGE FOR SHELL (I) : 0.97900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.790 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1VOM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11,25% PEG8K, 100MM MOPS PH 7,5, 1MM REMARK 280 TCEP, 250MM MGCL2, 50MM NAH2PO4, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.02000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.02000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 43.55000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 75.07500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 43.55000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 75.07500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 77.02000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 43.55000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 75.07500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 77.02000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 43.55000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 75.07500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1260 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 203 REMARK 465 GLN A 204 REMARK 465 ALA A 205 REMARK 465 ASN A 206 REMARK 465 GLY A 207 REMARK 465 SER A 208 REMARK 465 VAL A 702 REMARK 465 LYS A 703 REMARK 465 ARG A 704 REMARK 465 TYR A 705 REMARK 465 TYR A 706 REMARK 465 LEU A 707 REMARK 465 LEU A 708 REMARK 465 ALA A 709 REMARK 465 PRO A 710 REMARK 465 ASN A 711 REMARK 465 VAL A 712 REMARK 465 PRO A 713 REMARK 465 ARG A 714 REMARK 465 ASP A 715 REMARK 465 ALA A 716 REMARK 465 GLU A 717 REMARK 465 ASP A 718 REMARK 465 SER A 719 REMARK 465 GLN A 720 REMARK 465 LYS A 721 REMARK 465 LEU A 727 REMARK 465 LYS A 728 REMARK 465 HIS A 729 REMARK 465 LEU A 730 REMARK 465 ASN A 731 REMARK 465 ILE A 732 REMARK 465 ASP A 733 REMARK 465 PRO A 734 REMARK 465 ALA A 748 REMARK 465 GLY A 749 REMARK 465 GLN A 750 REMARK 465 LEU A 751 REMARK 465 ALA A 752 REMARK 465 ARG A 753 REMARK 465 ILE A 754 REMARK 465 GLU A 755 REMARK 465 GLU A 756 REMARK 465 ALA A 757 REMARK 465 ARG A 758 REMARK 465 GLU A 759 REMARK 465 GLN A 760 REMARK 465 ARG A 761 REMARK 465 ASP A 762 REMARK 465 TYR A 763 REMARK 465 LYS A 764 REMARK 465 ASP A 765 REMARK 465 ASP A 766 REMARK 465 ASP A 767 REMARK 465 ASP A 768 REMARK 465 LYS A 769 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 7 NE CZ NH1 NH2 REMARK 470 LYS A 18 CD CE NZ REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 ARG A 44 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 63 CG CD CE NZ REMARK 470 ARG A 131 CD NE CZ NH1 NH2 REMARK 470 ARG A 147 NE CZ NH1 NH2 REMARK 470 ARG A 170 NE CZ NH1 NH2 REMARK 470 ARG A 202 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 213 CD OE1 NE2 REMARK 470 GLN A 259 CD OE1 NE2 REMARK 470 LYS A 293 CG CD CE NZ REMARK 470 LYS A 294 CE NZ REMARK 470 LYS A 316 CG CD CE NZ REMARK 470 LYS A 325 CG CD CE NZ REMARK 470 GLN A 329 CG CD OE1 NE2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 470 GLU A 360 CG CD OE1 OE2 REMARK 470 LYS A 361 CE NZ REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 ARG A 445 CD NE CZ NH1 NH2 REMARK 470 LYS A 488 CE NZ REMARK 470 LYS A 496 CG CD CE NZ REMARK 470 LYS A 498 CD CE NZ REMARK 470 ARG A 520 NE CZ NH1 NH2 REMARK 470 LYS A 553 CE NZ REMARK 470 LYS A 610 CE NZ REMARK 470 LYS A 622 CD CE NZ REMARK 470 LYS A 623 CG CD CE NZ REMARK 470 ASN A 626 CG OD1 ND2 REMARK 470 PHE A 627 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 666 CE NZ REMARK 470 LYS A 670 CD CE NZ REMARK 470 LYS A 690 CD CE NZ REMARK 470 ILE A 697 CG1 CG2 CD1 REMARK 470 TYR A 698 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ASP A 700 CG OD1 OD2 REMARK 470 ASP A 724 CG OD1 OD2 REMARK 470 GLN A 736 CG CD OE1 NE2 REMARK 470 TYR A 737 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 PHE A 739 CD1 CD2 CE1 CE2 CZ REMARK 470 THR A 742 OG1 CG2 REMARK 470 LYS A 743 CG CD CE NZ REMARK 470 PHE A 746 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 274 -17.40 78.90 REMARK 500 SER A 465 -162.38 -117.49 REMARK 500 PHE A 487 -57.40 -120.84 REMARK 500 ALA A 699 40.50 -98.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 801 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 186 OG1 REMARK 620 2 SER A 237 OG 88.0 REMARK 620 3 ADP A 802 O2B 96.8 174.6 REMARK 620 4 HOH A 902 O 168.8 86.8 88.1 REMARK 620 5 HOH A 911 O 87.6 88.0 89.6 82.4 REMARK 620 6 HOH A 955 O 98.7 85.8 96.0 90.7 171.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 811 DBREF 4PJK A 1 761 UNP P08799 MYS2_DICDI 1 761 SEQADV 4PJK GLU A 238 UNP P08799 ARG 238 ENGINEERED MUTATION SEQADV 4PJK ARG A 459 UNP P08799 GLU 459 ENGINEERED MUTATION SEQADV 4PJK ASP A 762 UNP P08799 EXPRESSION TAG SEQADV 4PJK TYR A 763 UNP P08799 EXPRESSION TAG SEQADV 4PJK LYS A 764 UNP P08799 EXPRESSION TAG SEQADV 4PJK ASP A 765 UNP P08799 EXPRESSION TAG SEQADV 4PJK ASP A 766 UNP P08799 EXPRESSION TAG SEQADV 4PJK ASP A 767 UNP P08799 EXPRESSION TAG SEQADV 4PJK ASP A 768 UNP P08799 EXPRESSION TAG SEQADV 4PJK LYS A 769 UNP P08799 EXPRESSION TAG SEQRES 1 A 769 MET ASN PRO ILE HIS ASP ARG THR SER ASP TYR HIS LYS SEQRES 2 A 769 TYR LEU LYS VAL LYS GLN GLY ASP SER ASP LEU PHE LYS SEQRES 3 A 769 LEU THR VAL SER ASP LYS ARG TYR ILE TRP TYR ASN PRO SEQRES 4 A 769 ASP PRO LYS GLU ARG ASP SER TYR GLU CYS GLY GLU ILE SEQRES 5 A 769 VAL SER GLU THR SER ASP SER PHE THR PHE LYS THR VAL SEQRES 6 A 769 ASP GLY GLN ASP ARG GLN VAL LYS LYS ASP ASP ALA ASN SEQRES 7 A 769 GLN ARG ASN PRO ILE LYS PHE ASP GLY VAL GLU ASP MET SEQRES 8 A 769 SER GLU LEU SER TYR LEU ASN GLU PRO ALA VAL PHE HIS SEQRES 9 A 769 ASN LEU ARG VAL ARG TYR ASN GLN ASP LEU ILE TYR THR SEQRES 10 A 769 TYR SER GLY LEU PHE LEU VAL ALA VAL ASN PRO PHE LYS SEQRES 11 A 769 ARG ILE PRO ILE TYR THR GLN GLU MET VAL ASP ILE PHE SEQRES 12 A 769 LYS GLY ARG ARG ARG ASN GLU VAL ALA PRO HIS ILE PHE SEQRES 13 A 769 ALA ILE SER ASP VAL ALA TYR ARG SER MET LEU ASP ASP SEQRES 14 A 769 ARG GLN ASN GLN SER LEU LEU ILE THR GLY GLU SER GLY SEQRES 15 A 769 ALA GLY LYS THR GLU ASN THR LYS LYS VAL ILE GLN TYR SEQRES 16 A 769 LEU ALA SER VAL ALA GLY ARG ASN GLN ALA ASN GLY SER SEQRES 17 A 769 GLY VAL LEU GLU GLN GLN ILE LEU GLN ALA ASN PRO ILE SEQRES 18 A 769 LEU GLU ALA PHE GLY ASN ALA LYS THR THR ARG ASN ASN SEQRES 19 A 769 ASN SER SER GLU PHE GLY LYS PHE ILE GLU ILE GLN PHE SEQRES 20 A 769 ASN SER ALA GLY PHE ILE SER GLY ALA SER ILE GLN SER SEQRES 21 A 769 TYR LEU LEU GLU LYS SER ARG VAL VAL PHE GLN SER GLU SEQRES 22 A 769 THR GLU ARG ASN TYR HIS ILE PHE TYR GLN LEU LEU ALA SEQRES 23 A 769 GLY ALA THR ALA GLU GLU LYS LYS ALA LEU HIS LEU ALA SEQRES 24 A 769 GLY PRO GLU SER PHE ASN TYR LEU ASN GLN SER GLY CYS SEQRES 25 A 769 VAL ASP ILE LYS GLY VAL SER ASP SER GLU GLU PHE LYS SEQRES 26 A 769 ILE THR ARG GLN ALA MET ASP ILE VAL GLY PHE SER GLN SEQRES 27 A 769 GLU GLU GLN MET SER ILE PHE LYS ILE ILE ALA GLY ILE SEQRES 28 A 769 LEU HIS LEU GLY ASN ILE LYS PHE GLU LYS GLY ALA GLY SEQRES 29 A 769 GLU GLY ALA VAL LEU LYS ASP LYS THR ALA LEU ASN ALA SEQRES 30 A 769 ALA SER THR VAL PHE GLY VAL ASN PRO SER VAL LEU GLU SEQRES 31 A 769 LYS ALA LEU MET GLU PRO ARG ILE LEU ALA GLY ARG ASP SEQRES 32 A 769 LEU VAL ALA GLN HIS LEU ASN VAL GLU LYS SER SER SER SEQRES 33 A 769 SER ARG ASP ALA LEU VAL LYS ALA LEU TYR GLY ARG LEU SEQRES 34 A 769 PHE LEU TRP LEU VAL LYS LYS ILE ASN ASN VAL LEU CYS SEQRES 35 A 769 GLN GLU ARG LYS ALA TYR PHE ILE GLY VAL LEU ASP ILE SEQRES 36 A 769 SER GLY PHE ARG ILE PHE LYS VAL ASN SER PHE GLU GLN SEQRES 37 A 769 LEU CYS ILE ASN TYR THR ASN GLU LYS LEU GLN GLN PHE SEQRES 38 A 769 PHE ASN HIS HIS MET PHE LYS LEU GLU GLN GLU GLU TYR SEQRES 39 A 769 LEU LYS GLU LYS ILE ASN TRP THR PHE ILE ASP PHE GLY SEQRES 40 A 769 LEU ASP SER GLN ALA THR ILE ASP LEU ILE ASP GLY ARG SEQRES 41 A 769 GLN PRO PRO GLY ILE LEU ALA LEU LEU ASP GLU GLN SER SEQRES 42 A 769 VAL PHE PRO ASN ALA THR ASP ASN THR LEU ILE THR LYS SEQRES 43 A 769 LEU HIS SER HIS PHE SER LYS LYS ASN ALA LYS TYR GLU SEQRES 44 A 769 GLU PRO ARG PHE SER LYS THR GLU PHE GLY VAL THR HIS SEQRES 45 A 769 TYR ALA GLY GLN VAL MET TYR GLU ILE GLN ASP TRP LEU SEQRES 46 A 769 GLU LYS ASN LYS ASP PRO LEU GLN GLN ASP LEU GLU LEU SEQRES 47 A 769 CYS PHE LYS ASP SER SER ASP ASN VAL VAL THR LYS LEU SEQRES 48 A 769 PHE ASN ASP PRO ASN ILE ALA SER ARG ALA LYS LYS GLY SEQRES 49 A 769 ALA ASN PHE ILE THR VAL ALA ALA GLN TYR LYS GLU GLN SEQRES 50 A 769 LEU ALA SER LEU MET ALA THR LEU GLU THR THR ASN PRO SEQRES 51 A 769 HIS PHE VAL ARG CYS ILE ILE PRO ASN ASN LYS GLN LEU SEQRES 52 A 769 PRO ALA LYS LEU GLU ASP LYS VAL VAL LEU ASP GLN LEU SEQRES 53 A 769 ARG CYS ASN GLY VAL LEU GLU GLY ILE ARG ILE THR ARG SEQRES 54 A 769 LYS GLY PHE PRO ASN ARG ILE ILE TYR ALA ASP PHE VAL SEQRES 55 A 769 LYS ARG TYR TYR LEU LEU ALA PRO ASN VAL PRO ARG ASP SEQRES 56 A 769 ALA GLU ASP SER GLN LYS ALA THR ASP ALA VAL LEU LYS SEQRES 57 A 769 HIS LEU ASN ILE ASP PRO GLU GLN TYR ARG PHE GLY ILE SEQRES 58 A 769 THR LYS ILE PHE PHE ARG ALA GLY GLN LEU ALA ARG ILE SEQRES 59 A 769 GLU GLU ALA ARG GLU GLN ARG ASP TYR LYS ASP ASP ASP SEQRES 60 A 769 ASP LYS HET MG A 801 1 HET ADP A 802 27 HET PO4 A 803 5 HET PO4 A 804 5 HET GOL A 805 6 HET GOL A 806 6 HET GOL A 807 6 HET GOL A 808 6 HET GOL A 809 6 HET GOL A 810 6 HET GOL A 811 6 HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG MG 2+ FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 PO4 2(O4 P 3-) FORMUL 6 GOL 7(C3 H8 O3) FORMUL 13 HOH *380(H2 O) HELIX 1 AA1 SER A 9 LYS A 16 1 8 HELIX 2 AA2 ASP A 21 VAL A 29 1 9 HELIX 3 AA3 PRO A 82 ASP A 86 5 5 HELIX 4 AA4 ASP A 90 LEU A 94 5 5 HELIX 5 AA5 ASN A 98 GLN A 112 1 15 HELIX 6 AA6 THR A 136 LYS A 144 1 9 HELIX 7 AA7 ARG A 147 VAL A 151 5 5 HELIX 8 AA8 HIS A 154 ARG A 170 1 17 HELIX 9 AA9 GLY A 184 GLY A 201 1 18 HELIX 10 AB1 VAL A 210 GLY A 226 1 17 HELIX 11 AB2 GLU A 264 VAL A 269 5 6 HELIX 12 AB3 TYR A 278 ALA A 288 1 11 HELIX 13 AB4 THR A 289 LEU A 296 1 8 HELIX 14 AB5 GLY A 300 PHE A 304 5 5 HELIX 15 AB6 SER A 319 GLY A 335 1 17 HELIX 16 AB7 SER A 337 ASN A 356 1 20 HELIX 17 AB8 LYS A 372 GLY A 383 1 12 HELIX 18 AB9 ASN A 385 GLU A 395 1 11 HELIX 19 AC1 ASN A 410 CYS A 442 1 33 HELIX 20 AC2 SER A 465 PHE A 487 1 23 HELIX 21 AC3 PHE A 487 GLU A 497 1 11 HELIX 22 AC4 SER A 510 GLY A 519 1 10 HELIX 23 AC5 GLY A 524 VAL A 534 1 11 HELIX 24 AC6 THR A 539 SER A 552 1 14 HELIX 25 AC7 ASP A 583 ASP A 590 1 8 HELIX 26 AC8 GLN A 593 ASP A 602 1 10 HELIX 27 AC9 ASP A 605 ASP A 614 1 10 HELIX 28 AD1 ASP A 614 SER A 619 1 6 HELIX 29 AD2 THR A 629 THR A 647 1 19 HELIX 30 AD3 GLU A 668 ASN A 679 1 12 HELIX 31 AD4 GLY A 680 GLY A 691 1 12 HELIX 32 AD5 ILE A 697 PHE A 701 5 5 SHEET 1 AA1 5 ASP A 69 LYS A 73 0 SHEET 2 AA1 5 SER A 59 LYS A 63 -1 N PHE A 62 O ARG A 70 SHEET 3 AA1 5 GLU A 48 GLU A 55 -1 N VAL A 53 O THR A 61 SHEET 4 AA1 5 TYR A 34 TYR A 37 -1 N ILE A 35 O GLY A 50 SHEET 5 AA1 5 ASN A 78 GLN A 79 -1 O ASN A 78 N TRP A 36 SHEET 1 AA2 7 TYR A 116 SER A 119 0 SHEET 2 AA2 7 PHE A 122 VAL A 126 -1 O VAL A 124 N THR A 117 SHEET 3 AA2 7 ASN A 649 ILE A 656 1 O ARG A 654 N LEU A 123 SHEET 4 AA2 7 GLN A 173 THR A 178 1 N LEU A 176 O HIS A 651 SHEET 5 AA2 7 TYR A 448 ASP A 454 1 O GLY A 451 N GLN A 173 SHEET 6 AA2 7 GLY A 240 PHE A 247 -1 N ILE A 243 O VAL A 452 SHEET 7 AA2 7 ILE A 253 TYR A 261 -1 O TYR A 261 N GLY A 240 SHEET 1 AA3 2 ASN A 227 ALA A 228 0 SHEET 2 AA3 2 SER A 236 SER A 237 -1 O SER A 236 N ALA A 228 SHEET 1 AA4 2 GLU A 360 LYS A 361 0 SHEET 2 AA4 2 ALA A 367 VAL A 368 -1 O VAL A 368 N GLU A 360 SHEET 1 AA5 2 ARG A 397 ALA A 400 0 SHEET 2 AA5 2 ASP A 403 ALA A 406 -1 O VAL A 405 N ILE A 398 SHEET 1 AA6 3 TYR A 558 GLU A 559 0 SHEET 2 AA6 3 GLU A 567 HIS A 572 -1 O GLY A 569 N GLU A 559 SHEET 3 AA6 3 GLY A 575 GLU A 580 -1 O TYR A 579 N PHE A 568 SHEET 1 AA7 2 LYS A 622 LYS A 623 0 SHEET 2 AA7 2 ASN A 626 PHE A 627 -1 O ASN A 626 N LYS A 623 SHEET 1 AA8 3 ASN A 694 ILE A 696 0 SHEET 2 AA8 3 ILE A 744 PHE A 746 -1 O PHE A 746 N ASN A 694 SHEET 3 AA8 3 TYR A 737 PHE A 739 -1 N ARG A 738 O PHE A 745 LINK OG1 THR A 186 MG MG A 801 1555 1555 2.02 LINK OG SER A 237 MG MG A 801 1555 1555 2.07 LINK MG MG A 801 O2B ADP A 802 1555 1555 2.04 LINK MG MG A 801 O HOH A 902 1555 1555 1.99 LINK MG MG A 801 O HOH A 911 1555 1555 2.08 LINK MG MG A 801 O HOH A 955 1555 1555 2.02 CISPEP 1 GLN A 521 PRO A 522 0 0.38 SITE 1 AC1 6 THR A 186 SER A 237 ADP A 802 HOH A 911 SITE 2 AC1 6 HOH A 955 HOH A 902 SITE 1 AC2 23 ASN A 127 PRO A 128 PHE A 129 LYS A 130 SITE 2 AC2 23 TYR A 135 GLU A 180 GLY A 182 ALA A 183 SITE 3 AC2 23 GLY A 184 LYS A 185 THR A 186 GLU A 187 SITE 4 AC2 23 ASN A 233 MG A 801 PO4 A 803 HOH A 911 SITE 5 AC2 23 HOH A 955 HOH A 902 HOH A 925 HOH A1116 SITE 6 AC2 23 HOH A1092 HOH A1107 HOH A1113 SITE 1 AC3 10 GLU A 180 SER A 181 LYS A 185 SER A 237 SITE 2 AC3 10 SER A 456 GLY A 457 ARG A 459 ADP A 802 SITE 3 AC3 10 HOH A 902 HOH A 922 SITE 1 AC4 7 GLU A 180 ASN A 660 VAL A 671 ASP A 674 SITE 2 AC4 7 GLN A 675 GOL A 805 HOH A1146 SITE 1 AC5 9 GLU A 180 TYR A 573 GLN A 675 ASN A 679 SITE 2 AC5 9 PO4 A 804 HOH A 921 HOH A 954 HOH A 919 SITE 3 AC5 9 HOH A1146 SITE 1 AC6 7 LYS A 265 LYS A 423 ALA A 424 LEU A 431 SITE 2 AC6 7 HOH A 932 HOH A1055 HOH A 956 SITE 1 AC7 8 ILE A 35 TRP A 36 TYR A 37 ASN A 38 SITE 2 AC7 8 TYR A 47 ASP A 76 ASN A 78 HOH A1076 SITE 1 AC8 6 LYS A 16 GLU A 89 ASN A 149 VAL A 151 SITE 2 AC8 6 ALA A 152 HOH A1183 SITE 1 AC9 4 LYS A 42 SER A 549 HIS A 550 LYS A 554 SITE 1 AD1 6 PRO A 220 GLU A 223 ALA A 224 ASN A 235 SITE 2 AD1 6 HIS A 279 HOH A 970 SITE 1 AD2 8 GLN A 19 GLY A 20 PHE A 25 ARG A 397 SITE 2 AD2 8 ILE A 398 LEU A 399 GLN A 594 HOH A 976 CRYST1 87.100 150.150 154.040 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011481 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006660 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006492 0.00000