HEADER MOTOR PROTEIN 12-MAY-14 4PJM TITLE MYOSIN VI MOTOR DOMAIN IN THE PI RELEASE STATE, SPACE GROUP P212121 - TITLE 2 SOAKED WITH PO4 - LOCATED IN THE ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCONVENTIONAL MYOSIN-VI; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 GENE: MYO6; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS MOTOR PROTEIN, MYOSIN VI, MOTOR DOMAIN, PI RELEASE STATE EXPDTA X-RAY DIFFRACTION AUTHOR T.ISABET,H.BENISTY,P.LLINAS,H.L.SWEENEY,A.HOUDUSSE REVDAT 3 30-AUG-17 4PJM 1 LINK SITE ATOM REVDAT 2 30-MAR-16 4PJM 1 JRNL REVDAT 1 29-APR-15 4PJM 0 JRNL AUTH P.LLINAS,T.ISABET,L.SONG,V.ROPARS,B.ZONG,H.BENISTY,S.SIRIGU, JRNL AUTH 2 C.MORRIS,C.KIKUTI,D.SAFER,H.L.SWEENEY,A.HOUDUSSE JRNL TITL HOW ACTIN INITIATES THE MOTOR ACTIVITY OF MYOSIN. JRNL REF DEV.CELL V. 33 401 2015 JRNL REFN ISSN 1534-5807 JRNL PMID 25936506 JRNL DOI 10.1016/J.DEVCEL.2015.03.025 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 57304 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2866 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.87 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 4203 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1638 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3993 REMARK 3 BIN R VALUE (WORKING SET) : 0.1610 REMARK 3 BIN FREE R VALUE : 0.2175 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 210 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5862 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 602 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.86 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.17050 REMARK 3 B22 (A**2) : -3.01090 REMARK 3 B33 (A**2) : 5.18140 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.217 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.161 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.139 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.152 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.136 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6115 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8274 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2104 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 148 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 909 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6115 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 793 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : 7 ; 1.000 ; HARMONIC REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7890 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.00 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.24 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 16.46 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|* } REMARK 3 ORIGIN FOR THE GROUP (A): 1.2677 -3.8907 -13.7702 REMARK 3 T TENSOR REMARK 3 T11: -0.0700 T22: -0.0769 REMARK 3 T33: -0.0609 T12: 0.0092 REMARK 3 T13: 0.0037 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 0.4056 L22: 0.3086 REMARK 3 L33: 1.0533 L12: 0.0574 REMARK 3 L13: 0.1261 L23: -0.0576 REMARK 3 S TENSOR REMARK 3 S11: -0.0424 S12: -0.0257 S13: -0.0492 REMARK 3 S21: -0.0010 S22: 0.0367 S23: 0.0421 REMARK 3 S31: -0.0305 S32: -0.1048 S33: 0.0057 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PJM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201391. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.75 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9840 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 57304 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.92 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.75 REMARK 200 R MERGE FOR SHELL (I) : 0.46000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.380 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4,5%PEG8K, 50MM MES PH 6,75, 1MM TCEP, REMARK 280 3% ISOPROPANOL, 3% TERTBUTANOL, 50MM KSCN, 3% GLYC?ROL THEN REMARK 280 SOAKED WITH 150MM NAH2PO4 PH 7,5 AND 25% GLYC?ROL, PH 6.75, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.74500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.67000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 47.66500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.67000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.74500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 47.66500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 GLY A 175 REMARK 465 GLN A 176 REMARK 465 ASP A 177 REMARK 465 ILE A 178 REMARK 465 ASP A 179 REMARK 465 THR A 397 REMARK 465 THR A 398 REMARK 465 ALA A 399 REMARK 465 GLY A 400 REMARK 465 GLY A 401 REMARK 465 ALA A 402 REMARK 465 LYS A 403 REMARK 465 GLY A 404 REMARK 465 THR A 405 REMARK 465 VAL A 406 REMARK 465 LEU A 565 REMARK 465 ALA A 566 REMARK 465 SER A 623 REMARK 465 SER A 624 REMARK 465 THR A 625 REMARK 465 ASN A 626 REMARK 465 ASN A 627 REMARK 465 ASN A 628 REMARK 465 LYS A 629 REMARK 465 ASP A 630 REMARK 465 THR A 631 REMARK 465 LYS A 632 REMARK 465 GLN A 633 REMARK 465 LYS A 634 REMARK 465 ALA A 635 REMARK 465 GLY A 636 REMARK 465 LYS A 637 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 5 CG CD CE NZ REMARK 470 ASP A 27 CG OD1 OD2 REMARK 470 ASN A 35 CG OD1 ND2 REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 78 CE NZ REMARK 470 LYS A 105 CG CD CE NZ REMARK 470 GLU A 110 CD OE1 OE2 REMARK 470 LYS A 113 CD CE NZ REMARK 470 LYS A 142 CE NZ REMARK 470 GLU A 216 CG CD OE1 OE2 REMARK 470 LYS A 217 CE NZ REMARK 470 LYS A 240 CG CD CE NZ REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 470 GLU A 261 CG CD OE1 OE2 REMARK 470 ARG A 262 CZ NH1 NH2 REMARK 470 GLU A 286 CD OE1 OE2 REMARK 470 LYS A 289 CD CE NZ REMARK 470 GLU A 299 CD OE1 OE2 REMARK 470 LYS A 302 CE NZ REMARK 470 LYS A 325 CD CE NZ REMARK 470 ASP A 330 CG OD1 OD2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 LYS A 367 CD CE NZ REMARK 470 GLU A 373 CG CD OE1 OE2 REMARK 470 ARG A 393 CG CD NE CZ NH1 NH2 REMARK 470 LEU A 396 CG CD1 CD2 REMARK 470 LYS A 408 CG CD CE NZ REMARK 470 LYS A 412 CE NZ REMARK 470 GLU A 414 CD OE1 OE2 REMARK 470 GLU A 464 CD OE1 OE2 REMARK 470 LYS A 498 CD CE NZ REMARK 470 GLU A 505 CG CD OE1 OE2 REMARK 470 ARG A 521 CD NE CZ NH1 NH2 REMARK 470 GLN A 537 CG CD OE1 NE2 REMARK 470 GLN A 549 CG CD OE1 NE2 REMARK 470 LYS A 550 CD CE NZ REMARK 470 LYS A 552 CG CD CE NZ REMARK 470 ASP A 553 CG OD1 OD2 REMARK 470 PHE A 555 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 ARG A 561 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 562 CD CE NZ REMARK 470 SER A 563 OG REMARK 470 LYS A 564 CG CD CE NZ REMARK 470 ARG A 569 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 570 CG OD1 ND2 REMARK 470 ARG A 572 CD NE CZ NH1 NH2 REMARK 470 ARG A 580 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 595 CD OE1 OE2 REMARK 470 MET A 603 CG SD CE REMARK 470 LYS A 615 CE NZ REMARK 470 GLU A 622 CG CD OE1 OE2 REMARK 470 MET A 694 CE REMARK 470 MET A 701 CE REMARK 470 ASP A 724 CG OD1 OD2 REMARK 470 LYS A 725 CG CD CE NZ REMARK 470 ARG A 728 NE CZ NH1 NH2 REMARK 470 ASP A 730 OD1 OD2 REMARK 470 GLU A 746 CG CD OE1 OE2 REMARK 470 GLN A 768 CD OE1 NE2 REMARK 470 GLU A 779 CG CD OE1 OE2 REMARK 470 LYS A 782 CG CD CE NZ REMARK 470 ILE A 789 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 392 C ARG A 393 N -0.139 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 THR A 392 O - C - N ANGL. DEV. = -9.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 27 -3.21 61.16 REMARK 500 GLN A 36 53.89 -143.23 REMARK 500 ALA A 91 -114.45 61.36 REMARK 500 LYS A 105 -2.62 63.29 REMARK 500 SER A 467 -162.42 -109.65 REMARK 500 LEU A 522 -50.87 66.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 802 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 158 OG1 REMARK 620 2 SER A 204 OG 82.7 REMARK 620 3 PO4 A 801 O2 169.5 87.3 REMARK 620 4 PO4 A 801 O2 171.2 88.7 2.1 REMARK 620 5 HOH A 942 O 91.4 89.1 91.4 89.9 REMARK 620 6 ADP A 803 O3B 90.2 172.3 100.0 98.5 88.3 REMARK 620 7 HOH A 913 O 85.1 87.2 91.5 93.1 175.2 95.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ADP A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 812 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PFO RELATED DB: PDB DBREF 4PJM A 2 789 UNP F1RQI7 F1RQI7_PIG 2 789 SEQRES 1 A 788 GLU ASP GLY LYS PRO VAL TRP ALA PRO HIS PRO THR ASP SEQRES 2 A 788 GLY PHE GLN VAL GLY ASN ILE VAL ASP ILE GLY PRO ASP SEQRES 3 A 788 SER LEU THR ILE GLU PRO LEU ASN GLN LYS GLY LYS THR SEQRES 4 A 788 PHE LEU ALA LEU ILE ASN GLN VAL PHE PRO ALA GLU GLU SEQRES 5 A 788 ASP SER LYS LYS ASP VAL GLU ASP ASN CYS SER LEU MET SEQRES 6 A 788 TYR LEU ASN GLU ALA THR LEU LEU HIS ASN ILE LYS VAL SEQRES 7 A 788 ARG TYR SER LYS ASP ARG ILE TYR THR TYR VAL ALA ASN SEQRES 8 A 788 ILE LEU ILE ALA VAL ASN PRO TYR PHE ASP ILE PRO LYS SEQRES 9 A 788 ILE TYR SER SER GLU THR ILE LYS SER TYR GLN GLY LYS SEQRES 10 A 788 SER LEU GLY THR MET PRO PRO HIS VAL PHE ALA ILE ALA SEQRES 11 A 788 ASP LYS ALA PHE ARG ASP MET LYS VAL LEU LYS LEU SER SEQRES 12 A 788 GLN SER ILE ILE VAL SER GLY GLU SER GLY ALA GLY LYS SEQRES 13 A 788 THR GLU ASN THR LYS PHE VAL LEU ARG TYR LEU THR GLU SEQRES 14 A 788 SER TYR GLY THR GLY GLN ASP ILE ASP ASP ARG ILE VAL SEQRES 15 A 788 GLU ALA ASN PRO LEU LEU GLU ALA PHE GLY ASN ALA LYS SEQRES 16 A 788 THR VAL ARG ASN ASN ASN SER SER ARG PHE GLY LYS PHE SEQRES 17 A 788 VAL GLU ILE HIS PHE ASN GLU LYS SER SER VAL VAL GLY SEQRES 18 A 788 GLY PHE VAL SER HIS TYR LEU LEU GLU LYS SER ARG ILE SEQRES 19 A 788 CYS VAL GLN GLY LYS GLU GLU ARG ASN TYR HIS ILE PHE SEQRES 20 A 788 TYR ARG LEU CYS ALA GLY ALA SER GLU ASP ILE ARG GLU SEQRES 21 A 788 ARG LEU HIS LEU SER SER PRO ASP ASN PHE ARG TYR LEU SEQRES 22 A 788 ASN ARG GLY CYS THR ARG TYR PHE ALA ASN LYS GLU THR SEQRES 23 A 788 ASP LYS GLN ILE LEU GLN ASN ARG LYS SER PRO GLU TYR SEQRES 24 A 788 LEU LYS ALA GLY SER LEU LYS ASP PRO LEU LEU ASP ASP SEQRES 25 A 788 HIS GLY ASP PHE ILE ARG MET CYS THR ALA MET LYS LYS SEQRES 26 A 788 ILE GLY LEU ASP ASP GLU GLU LYS LEU ASP LEU PHE ARG SEQRES 27 A 788 VAL VAL ALA GLY VAL LEU HIS LEU GLY ASN ILE ASP PHE SEQRES 28 A 788 GLU GLU ALA GLY SER THR SER GLY GLY CYS ASN LEU LYS SEQRES 29 A 788 ASN LYS SER THR GLN ALA LEU GLU TYR CYS ALA GLU LEU SEQRES 30 A 788 LEU GLY LEU ASP GLN ASP ASP LEU ARG VAL SER LEU THR SEQRES 31 A 788 THR ARG VAL MET LEU THR THR ALA GLY GLY ALA LYS GLY SEQRES 32 A 788 THR VAL ILE LYS VAL PRO LEU LYS VAL GLU GLN ALA ASN SEQRES 33 A 788 ASN ALA ARG ASP ALA LEU ALA LYS THR VAL TYR SER HIS SEQRES 34 A 788 LEU PHE ASP HIS VAL VAL ASN ARG VAL ASN GLN CYS PHE SEQRES 35 A 788 PRO PHE GLU THR SER SER TYR PHE ILE GLY VAL LEU ASP SEQRES 36 A 788 ILE ALA GLY PHE GLU TYR PHE GLU HIS ASN SER PHE GLU SEQRES 37 A 788 GLN PHE CYS ILE ASN TYR CYS ASN GLU LYS LEU GLN GLN SEQRES 38 A 788 PHE PHE ASN GLU ARG ILE LEU LYS GLU GLU GLN GLU LEU SEQRES 39 A 788 TYR GLN LYS GLU GLY LEU GLY VAL ASN GLU VAL HIS TYR SEQRES 40 A 788 VAL ASP ASN GLN ASP CYS ILE ASP LEU ILE GLU ALA ARG SEQRES 41 A 788 LEU VAL GLY ILE LEU ASP ILE LEU ASP GLU GLU ASN ARG SEQRES 42 A 788 LEU PRO GLN PRO SER ASP GLN HIS PHE THR SER ALA VAL SEQRES 43 A 788 HIS GLN LYS HIS LYS ASP HIS PHE ARG LEU SER ILE PRO SEQRES 44 A 788 ARG LYS SER LYS LEU ALA ILE HIS ARG ASN ILE ARG ASP SEQRES 45 A 788 ASP GLU GLY PHE ILE ILE ARG HIS PHE ALA GLY ALA VAL SEQRES 46 A 788 CYS TYR GLU THR THR GLN PHE VAL GLU LYS ASN ASN ASP SEQRES 47 A 788 ALA LEU HIS MET SER LEU GLU SER LEU ILE CYS GLU SER SEQRES 48 A 788 ARG ASP LYS PHE ILE ARG GLU LEU PHE GLU SER SER THR SEQRES 49 A 788 ASN ASN ASN LYS ASP THR LYS GLN LYS ALA GLY LYS LEU SEQRES 50 A 788 SER PHE ILE SER VAL GLY ASN LYS PHE LYS THR GLN LEU SEQRES 51 A 788 ASN LEU LEU LEU ASP LYS LEU ARG SER THR GLY ALA SER SEQRES 52 A 788 PHE ILE ARG CYS ILE LYS PRO ASN LEU LYS MET THR SER SEQRES 53 A 788 HIS HIS PHE GLU GLY ALA GLN ILE LEU SER GLN LEU GLN SEQRES 54 A 788 CYS SER GLY MET VAL SER VAL LEU ASP LEU MET GLN GLY SEQRES 55 A 788 GLY PHE PRO SER ARG ALA SER PHE HIS GLU LEU TYR ASN SEQRES 56 A 788 MET TYR LYS LYS TYR MET PRO ASP LYS LEU ALA ARG LEU SEQRES 57 A 788 ASP PRO ARG LEU PHE CYS LYS ALA LEU PHE LYS ALA LEU SEQRES 58 A 788 GLY LEU ASN GLU ILE ASP TYR LYS PHE GLY LEU THR LYS SEQRES 59 A 788 VAL PHE PHE ARG PRO GLY LYS PHE ALA GLU PHE ASP GLN SEQRES 60 A 788 ILE MET LYS SER ASP PRO ASP HIS LEU ALA GLU LEU VAL SEQRES 61 A 788 LYS ARG VAL ASN HIS TRP LEU ILE HET PO4 A 801 10 HET MG A 802 1 HET ADP A 803 27 HET GOL A 804 6 HET GOL A 805 6 HET GOL A 806 6 HET IPA A 807 4 HET IPA A 808 4 HET GOL A 809 6 HET GOL A 810 6 HET GOL A 811 6 HET GOL A 812 6 HETNAM PO4 PHOSPHATE ION HETNAM MG MAGNESIUM ION HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETNAM IPA ISOPROPYL ALCOHOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL HETSYN IPA 2-PROPANOL FORMUL 2 PO4 O4 P 3- FORMUL 3 MG MG 2+ FORMUL 4 ADP C10 H15 N5 O10 P2 FORMUL 5 GOL 7(C3 H8 O3) FORMUL 8 IPA 2(C3 H8 O) FORMUL 14 HOH *602(H2 O) HELIX 1 AA1 ASN A 46 VAL A 48 5 3 HELIX 2 AA2 ASP A 61 LEU A 65 5 5 HELIX 3 AA3 ASN A 69 LYS A 83 1 15 HELIX 4 AA4 SER A 108 GLN A 116 1 9 HELIX 5 AA5 HIS A 126 LYS A 142 1 17 HELIX 6 AA6 GLY A 156 GLY A 173 1 18 HELIX 7 AA7 ARG A 181 ALA A 185 1 5 HELIX 8 AA8 ALA A 185 GLY A 193 1 9 HELIX 9 AA9 LYS A 232 CYS A 236 5 5 HELIX 10 AB1 TYR A 245 ALA A 255 1 11 HELIX 11 AB2 SER A 256 LEU A 263 1 8 HELIX 12 AB3 SER A 267 ASN A 270 5 4 HELIX 13 AB4 PHE A 271 ARG A 276 1 6 HELIX 14 AB5 ASN A 284 ILE A 291 1 8 HELIX 15 AB6 LEU A 292 LYS A 296 5 5 HELIX 16 AB7 SER A 297 GLY A 304 1 8 HELIX 17 AB8 ASP A 312 ILE A 327 1 16 HELIX 18 AB9 ASP A 330 ASN A 349 1 20 HELIX 19 AC1 SER A 368 GLY A 380 1 13 HELIX 20 AC2 ASP A 382 THR A 391 1 10 HELIX 21 AC3 LYS A 412 GLN A 441 1 30 HELIX 22 AC4 SER A 467 LEU A 489 1 23 HELIX 23 AC5 LEU A 489 GLU A 499 1 11 HELIX 24 AC6 ASN A 511 ALA A 520 1 10 HELIX 25 AC7 GLY A 524 LEU A 535 1 12 HELIX 26 AC8 SER A 539 HIS A 551 1 13 HELIX 27 AC9 ILE A 559 SER A 563 5 5 HELIX 28 AD1 ILE A 567 ILE A 571 5 5 HELIX 29 AD2 GLN A 592 ASN A 597 1 6 HELIX 30 AD3 HIS A 602 GLU A 611 1 10 HELIX 31 AD4 ASP A 614 PHE A 621 1 8 HELIX 32 AD5 SER A 642 SER A 660 1 19 HELIX 33 AD6 GLU A 681 SER A 692 1 12 HELIX 34 AD7 MET A 694 SER A 696 5 3 HELIX 35 AD8 VAL A 697 GLY A 703 1 7 HELIX 36 AD9 PHE A 711 LYS A 719 1 9 HELIX 37 AE1 LYS A 720 MET A 722 5 3 HELIX 38 AE2 PRO A 723 ARG A 728 1 6 HELIX 39 AE3 ASP A 730 LEU A 742 1 13 HELIX 40 AE4 LYS A 762 LYS A 771 1 10 HELIX 41 AE5 ASP A 773 ILE A 789 1 17 SHEET 1 AA1 5 PHE A 41 LEU A 44 0 SHEET 2 AA1 5 SER A 28 PRO A 33 -1 N ILE A 31 O PHE A 41 SHEET 3 AA1 5 GLY A 15 GLY A 25 -1 N ASN A 20 O GLU A 32 SHEET 4 AA1 5 VAL A 7 HIS A 11 -1 N VAL A 7 O GLY A 19 SHEET 5 AA1 5 PHE A 49 PRO A 50 -1 O PHE A 49 N TRP A 8 SHEET 1 AA2 7 TYR A 87 VAL A 90 0 SHEET 2 AA2 7 ILE A 93 VAL A 97 -1 O ILE A 95 N THR A 88 SHEET 3 AA2 7 GLY A 662 ILE A 669 1 O ARG A 667 N LEU A 94 SHEET 4 AA2 7 GLN A 145 SER A 150 1 N SER A 150 O CYS A 668 SHEET 5 AA2 7 TYR A 450 ASP A 456 1 O GLY A 453 N ILE A 147 SHEET 6 AA2 7 GLY A 207 PHE A 214 -1 N PHE A 214 O TYR A 450 SHEET 7 AA2 7 VAL A 220 TYR A 228 -1 O PHE A 224 N GLU A 211 SHEET 1 AA3 2 ASN A 194 ALA A 195 0 SHEET 2 AA3 2 SER A 203 SER A 204 -1 O SER A 203 N ALA A 195 SHEET 1 AA4 2 PHE A 352 ALA A 355 0 SHEET 2 AA4 2 GLY A 361 LEU A 364 -1 O ASN A 363 N GLU A 353 SHEET 1 AA5 2 THR A 392 VAL A 394 0 SHEET 2 AA5 2 LYS A 408 PRO A 410 -1 O VAL A 409 N ARG A 393 SHEET 1 AA6 3 LEU A 557 SER A 558 0 SHEET 2 AA6 3 GLY A 576 ARG A 580 -1 O ILE A 578 N SER A 558 SHEET 3 AA6 3 ALA A 585 GLU A 589 -1 O TYR A 588 N PHE A 577 SHEET 1 AA7 3 SER A 707 SER A 710 0 SHEET 2 AA7 3 LYS A 755 PHE A 758 -1 O PHE A 758 N SER A 707 SHEET 3 AA7 3 TYR A 749 PHE A 751 -1 N LYS A 750 O PHE A 757 LINK OG1 THR A 158 MG MG A 802 1555 1555 2.05 LINK OG SER A 204 MG MG A 802 1555 1555 2.22 LINK O2 APO4 A 801 MG MG A 802 1555 1555 2.01 LINK O2 BPO4 A 801 MG MG A 802 1555 1555 2.01 LINK MG MG A 802 O HOH A 942 1555 1555 2.12 LINK MG MG A 802 O3B ADP A 803 1555 1555 2.11 LINK MG MG A 802 O HOH A 913 1555 1555 2.05 SITE 1 AC1 12 SER A 153 LYS A 157 ASN A 200 SER A 203 SITE 2 AC1 12 SER A 204 ALA A 458 MG A 802 ADP A 803 SITE 3 AC1 12 HOH A 942 HOH A 913 HOH A 934 HOH A1281 SITE 1 AC2 6 THR A 158 SER A 204 PO4 A 801 ADP A 803 SITE 2 AC2 6 HOH A 942 HOH A 913 SITE 1 AC3 27 ILE A 86 ASN A 98 PRO A 99 TYR A 100 SITE 2 AC3 27 PHE A 101 TYR A 107 GLU A 152 SER A 153 SITE 3 AC3 27 GLY A 154 ALA A 155 GLY A 156 LYS A 157 SITE 4 AC3 27 THR A 158 GLU A 159 PHE A 163 ASN A 200 SITE 5 AC3 27 LEU A 310 PO4 A 801 MG A 802 HOH A 978 SITE 6 AC3 27 HOH A 942 HOH A1182 HOH A 913 HOH A1082 SITE 7 AC3 27 HOH A1133 HOH A1158 HOH A1202 SITE 1 AC4 8 GLY A 121 THR A 122 ASP A 288 LYS A 289 SITE 2 AC4 8 ILE A 291 GLN A 293 LYS A 296 HOH A1199 SITE 1 AC5 8 ALA A 253 GLY A 254 ALA A 255 GLN A 290 SITE 2 AC5 8 ILE A 291 LEU A 292 ARG A 295 HIS A 314 SITE 1 AC6 5 ARG A 667 SER A 692 MET A 694 GOL A 810 SITE 2 AC6 5 HOH A 922 SITE 1 AC7 4 ASP A 288 GLY A 304 SER A 305 LYS A 307 SITE 1 AC8 3 ASN A 477 LEU A 480 GLN A 481 SITE 1 AC9 5 GLN A 17 PHE A 41 ARG A 613 HOH A1086 SITE 2 AC9 5 HOH A1011 SITE 1 AD1 9 GLN A 481 PHE A 484 ASN A 485 LEU A 489 SITE 2 AD1 9 SER A 692 GLY A 693 MET A 694 VAL A 697 SITE 3 AD1 9 GOL A 806 SITE 1 AD2 3 GLU A 211 PHE A 445 LYS A 657 SITE 1 AD3 8 SER A 389 THR A 392 ARG A 393 LEU A 411 SITE 2 AD3 8 SER A 604 LEU A 605 HOH A 914 HOH A1012 CRYST1 91.490 95.330 103.340 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010930 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010490 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009677 0.00000