HEADER DE NOVO PROTEIN, RNA BINDING PROTEIN 12-MAY-14 4PJR TITLE CRYSTAL STRUCTURE OF DESIGNED CPPR-NRE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENTATRICOPEPTIDE REPEAT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 4 ORGANISM_TAXID: 32644 KEYWDS DESIGNER RNA-BINDING PROTEINS; PENTATRICOPEPTIDE REPEAT; SYNTHETIC KEYWDS 2 BIOLOGY; RNA-PROTEIN INTERACTIONS, RNA BINDING PROTEIN, DE NOVO KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.C.COQUILLE,A.FILIPOVSKA,T.S.CHIA,L.RAJAPPA,J.P.LINGFORD, AUTHOR 2 M.F.M.RAZIF,S.THORE,O.RACKHAM REVDAT 6 27-SEP-23 4PJR 1 REMARK LINK REVDAT 5 01-JAN-20 4PJR 1 REMARK REVDAT 4 22-NOV-17 4PJR 1 REMARK REVDAT 3 13-SEP-17 4PJR 1 SOURCE KEYWDS REMARK REVDAT 2 31-DEC-14 4PJR 1 JRNL REVDAT 1 24-DEC-14 4PJR 0 JRNL AUTH S.COQUILLE,A.FILIPOVSKA,T.CHIA,L.RAJAPPA,J.P.LINGFORD, JRNL AUTH 2 M.F.RAZIF,S.THORE,O.RACKHAM JRNL TITL AN ARTIFICIAL PPR SCAFFOLD FOR PROGRAMMABLE RNA RECOGNITION. JRNL REF NAT COMMUN V. 5 5729 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 25517350 JRNL DOI 10.1038/NCOMMS6729 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.78 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.200 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 46030 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.7848 - 6.1536 1.00 1386 149 0.1522 0.1969 REMARK 3 2 6.1536 - 4.9089 0.99 1359 153 0.1618 0.1844 REMARK 3 3 4.9089 - 4.2956 0.99 1402 155 0.1257 0.1645 REMARK 3 4 4.2956 - 3.9062 1.00 1366 156 0.1415 0.1505 REMARK 3 5 3.9062 - 3.6280 1.00 1363 154 0.1532 0.1623 REMARK 3 6 3.6280 - 3.4153 1.00 1381 148 0.1740 0.2088 REMARK 3 7 3.4153 - 3.2450 1.00 1392 159 0.1980 0.2350 REMARK 3 8 3.2450 - 3.1043 0.99 1375 149 0.2150 0.2710 REMARK 3 9 3.1043 - 2.9852 1.00 1385 152 0.2046 0.2292 REMARK 3 10 2.9852 - 2.8825 1.00 1366 151 0.1960 0.2546 REMARK 3 11 2.8825 - 2.7926 1.00 1389 153 0.1942 0.2401 REMARK 3 12 2.7926 - 2.7130 1.00 1375 154 0.2030 0.2590 REMARK 3 13 2.7130 - 2.6418 1.00 1395 156 0.2116 0.3170 REMARK 3 14 2.6418 - 2.5775 1.00 1371 155 0.1990 0.2386 REMARK 3 15 2.5775 - 2.5190 1.00 1400 156 0.2058 0.2306 REMARK 3 16 2.5190 - 2.4655 1.00 1374 157 0.2094 0.2334 REMARK 3 17 2.4655 - 2.4162 1.00 1394 159 0.2110 0.2484 REMARK 3 18 2.4162 - 2.3707 1.00 1365 154 0.2176 0.2589 REMARK 3 19 2.3707 - 2.3285 1.00 1364 158 0.2198 0.2478 REMARK 3 20 2.3285 - 2.2890 1.00 1380 151 0.2229 0.2870 REMARK 3 21 2.2890 - 2.2522 1.00 1389 156 0.2186 0.2512 REMARK 3 22 2.2522 - 2.2176 1.00 1385 147 0.2279 0.2919 REMARK 3 23 2.2176 - 2.1850 1.00 1369 148 0.2301 0.3026 REMARK 3 24 2.1850 - 2.1543 1.00 1392 155 0.2513 0.2653 REMARK 3 25 2.1543 - 2.1252 1.00 1399 159 0.2837 0.3536 REMARK 3 26 2.1252 - 2.0976 1.00 1365 148 0.2964 0.3619 REMARK 3 27 2.0976 - 2.0714 1.00 1397 158 0.2897 0.2926 REMARK 3 28 2.0714 - 2.0465 1.00 1345 147 0.2791 0.3726 REMARK 3 29 2.0465 - 2.0227 1.00 1423 156 0.2899 0.3118 REMARK 3 30 2.0227 - 2.0000 1.00 1374 157 0.2962 0.3234 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 1466 REMARK 3 ANGLE : 1.288 1997 REMARK 3 CHIRALITY : 0.076 235 REMARK 3 PLANARITY : 0.005 260 REMARK 3 DIHEDRAL : 16.762 602 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PJR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201537. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.3 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XDS, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 46030 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.82900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4PJS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BISTRIS PH 6.3, 0.2M CALCIUM REMARK 280 CHLORIDE, 15MM MAGNESIUM SULFATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 291.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.14000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.35000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.35000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.14000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 210 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 9680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 ASN A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 THR A 5 REMARK 465 TYR A 6 REMARK 465 ASN A 7 REMARK 465 THR A 8 REMARK 465 LEU A 9 REMARK 465 ILE A 10 REMARK 465 SER A 11 REMARK 465 GLY A 12 REMARK 465 LEU A 13 REMARK 465 GLY A 14 REMARK 465 LYS A 15 REMARK 465 ALA A 16 REMARK 465 GLY A 17 REMARK 465 ARG A 18 REMARK 465 LEU A 19 REMARK 465 GLU A 20 REMARK 465 GLU A 21 REMARK 465 ALA A 22 REMARK 465 LEU A 23 REMARK 465 GLU A 24 REMARK 465 LEU A 25 REMARK 465 PHE A 26 REMARK 465 GLU A 27 REMARK 465 GLU A 28 REMARK 465 MET A 29 REMARK 465 LYS A 30 REMARK 465 GLU A 31 REMARK 465 LYS A 32 REMARK 465 GLY A 33 REMARK 465 ILE A 34 REMARK 465 VAL A 35 REMARK 465 PRO A 36 REMARK 465 ASP A 37 REMARK 465 VAL A 38 REMARK 465 VAL A 39 REMARK 465 THR A 40 REMARK 465 TYR A 41 REMARK 465 THR A 42 REMARK 465 THR A 43 REMARK 465 LEU A 44 REMARK 465 ILE A 45 REMARK 465 SER A 46 REMARK 465 GLY A 47 REMARK 465 LEU A 48 REMARK 465 GLY A 49 REMARK 465 LYS A 50 REMARK 465 ALA A 51 REMARK 465 GLY A 52 REMARK 465 ARG A 53 REMARK 465 LEU A 54 REMARK 465 GLU A 55 REMARK 465 GLU A 56 REMARK 465 ALA A 57 REMARK 465 LEU A 58 REMARK 465 GLU A 59 REMARK 465 LEU A 60 REMARK 465 PHE A 61 REMARK 465 GLU A 62 REMARK 465 GLU A 63 REMARK 465 MET A 64 REMARK 465 LYS A 65 REMARK 465 GLU A 66 REMARK 465 LYS A 67 REMARK 465 GLY A 68 REMARK 465 ILE A 69 REMARK 465 VAL A 70 REMARK 465 PRO A 71 REMARK 465 ASP A 72 REMARK 465 VAL A 73 REMARK 465 VAL A 74 REMARK 465 THR A 75 REMARK 465 TYR A 76 REMARK 465 ASN A 77 REMARK 465 THR A 78 REMARK 465 LEU A 79 REMARK 465 ILE A 80 REMARK 465 SER A 81 REMARK 465 GLY A 82 REMARK 465 LEU A 83 REMARK 465 GLY A 84 REMARK 465 LYS A 85 REMARK 465 ALA A 86 REMARK 465 GLY A 262 REMARK 465 ARG A 263 REMARK 465 LEU A 264 REMARK 465 GLU A 265 REMARK 465 GLU A 266 REMARK 465 ALA A 267 REMARK 465 LEU A 268 REMARK 465 GLU A 269 REMARK 465 LEU A 270 REMARK 465 PHE A 271 REMARK 465 GLU A 272 REMARK 465 GLU A 273 REMARK 465 MET A 274 REMARK 465 LYS A 275 REMARK 465 GLU A 276 REMARK 465 LYS A 277 REMARK 465 GLY A 278 REMARK 465 ILE A 279 REMARK 465 VAL A 280 REMARK 465 PRO A 281 REMARK 465 ASN A 282 REMARK 465 VAL A 283 REMARK 465 VAL A 284 REMARK 465 THR A 285 REMARK 465 TYR A 286 REMARK 465 ASN A 287 REMARK 465 THR A 288 REMARK 465 LEU A 289 REMARK 465 ILE A 290 REMARK 465 SER A 291 REMARK 465 GLY A 292 REMARK 465 LEU A 293 REMARK 465 GLY A 294 REMARK 465 LYS A 295 REMARK 465 ALA A 296 REMARK 465 GLY A 297 REMARK 465 CYS A 298 REMARK 465 GLY A 299 REMARK 465 ARG A 300 REMARK 465 ALA A 301 REMARK 465 LEU A 302 REMARK 465 GLU A 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 160 O HOH A 501 1.55 REMARK 500 OE1 GLU A 160 O HOH A 502 1.95 REMARK 500 OG1 THR A 252 O HOH A 503 2.02 REMARK 500 OE2 GLU A 230 O HOH A 504 2.04 REMARK 500 O HOH A 506 O HOH A 568 2.06 REMARK 500 O HOH A 664 O HOH A 704 2.10 REMARK 500 O HOH A 510 O HOH A 566 2.11 REMARK 500 O HOH A 611 O HOH A 614 2.11 REMARK 500 OG1 THR A 112 O HOH A 734 2.11 REMARK 500 O ALA A 191 O HOH A 705 2.12 REMARK 500 OG1 THR A 112 O HOH A 747 2.13 REMARK 500 O HOH A 501 O HOH A 507 2.13 REMARK 500 O HOH A 715 O HOH A 752 2.14 REMARK 500 O HOH A 596 O HOH A 664 2.14 REMARK 500 O HOH A 575 O HOH A 606 2.15 REMARK 500 OG1 THR A 215 O HOH A 738 2.16 REMARK 500 OE2 GLU A 160 OE2 GLU A 164 2.17 REMARK 500 O HOH A 614 O HOH A 750 2.17 REMARK 500 O HOH A 562 O HOH A 720 2.17 REMARK 500 O HOH A 661 O HOH A 712 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLY A 87 O ALA A 261 2454 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 651 DISTANCE = 5.81 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 132 OE2 REMARK 620 2 GLU A 202 OE1 119.3 REMARK 620 3 HOH A 520 O 90.6 83.0 REMARK 620 4 HOH A 551 O 95.2 140.8 116.8 REMARK 620 5 HOH A 557 O 86.9 139.4 65.1 52.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 516 O REMARK 620 2 HOH A 524 O 111.0 REMARK 620 3 HOH A 527 O 86.6 60.4 REMARK 620 4 HOH A 529 O 158.7 70.6 111.0 REMARK 620 5 HOH A 534 O 75.5 156.0 98.1 112.1 REMARK 620 6 HOH A 536 O 133.3 84.7 62.7 67.6 75.3 REMARK 620 7 HOH A 538 O 69.4 72.4 113.8 91.8 129.9 153.4 REMARK 620 8 HOH A 543 O 91.6 117.7 176.5 70.1 84.3 120.5 62.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 506 O REMARK 620 2 HOH A 539 O 60.5 REMARK 620 3 HOH A 546 O 56.2 76.0 REMARK 620 4 HOH A 547 O 170.1 129.4 123.4 REMARK 620 5 HOH A 548 O 112.2 76.4 152.0 72.7 REMARK 620 6 HOH A 549 O 104.1 71.6 57.6 81.7 108.7 REMARK 620 7 HOH A 556 O 94.4 120.5 135.9 79.8 64.6 161.4 REMARK 620 8 HOH A 566 O 67.2 125.8 64.0 103.4 139.4 110.6 74.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PJQ RELATED DB: PDB REMARK 900 RELATED ID: 4PJS RELATED DB: PDB DBREF 4PJR A 1 303 PDB 4PJR 4PJR 1 303 SEQRES 1 A 303 GLY ASN SER VAL THR TYR ASN THR LEU ILE SER GLY LEU SEQRES 2 A 303 GLY LYS ALA GLY ARG LEU GLU GLU ALA LEU GLU LEU PHE SEQRES 3 A 303 GLU GLU MET LYS GLU LYS GLY ILE VAL PRO ASP VAL VAL SEQRES 4 A 303 THR TYR THR THR LEU ILE SER GLY LEU GLY LYS ALA GLY SEQRES 5 A 303 ARG LEU GLU GLU ALA LEU GLU LEU PHE GLU GLU MET LYS SEQRES 6 A 303 GLU LYS GLY ILE VAL PRO ASP VAL VAL THR TYR ASN THR SEQRES 7 A 303 LEU ILE SER GLY LEU GLY LYS ALA GLY ARG LEU GLU GLU SEQRES 8 A 303 ALA LEU GLU LEU PHE GLU GLU MET LYS GLU LYS GLY ILE SEQRES 9 A 303 VAL PRO ASP VAL VAL THR TYR THR THR LEU ILE SER GLY SEQRES 10 A 303 LEU GLY LYS ALA GLY ARG LEU GLU GLU ALA LEU GLU LEU SEQRES 11 A 303 PHE GLU GLU MET LYS GLU LYS GLY ILE VAL PRO ASN VAL SEQRES 12 A 303 VAL THR TYR ASN THR LEU ILE SER GLY LEU GLY LYS ALA SEQRES 13 A 303 GLY ARG LEU GLU GLU ALA LEU GLU LEU PHE GLU GLU MET SEQRES 14 A 303 LYS GLU LYS GLY ILE VAL PRO ASP VAL VAL THR TYR THR SEQRES 15 A 303 THR LEU ILE SER GLY LEU GLY LYS ALA GLY ARG LEU GLU SEQRES 16 A 303 GLU ALA LEU GLU LEU PHE GLU GLU MET LYS GLU LYS GLY SEQRES 17 A 303 ILE VAL PRO ASN VAL VAL THR TYR ASN THR LEU ILE SER SEQRES 18 A 303 GLY LEU GLY LYS ALA GLY ARG LEU GLU GLU ALA LEU GLU SEQRES 19 A 303 LEU PHE GLU GLU MET LYS GLU LYS GLY ILE VAL PRO ASP SEQRES 20 A 303 VAL VAL THR TYR THR THR LEU ILE SER GLY LEU GLY LYS SEQRES 21 A 303 ALA GLY ARG LEU GLU GLU ALA LEU GLU LEU PHE GLU GLU SEQRES 22 A 303 MET LYS GLU LYS GLY ILE VAL PRO ASN VAL VAL THR TYR SEQRES 23 A 303 ASN THR LEU ILE SER GLY LEU GLY LYS ALA GLY CYS GLY SEQRES 24 A 303 ARG ALA LEU GLU HET MG A 401 1 HET MG A 402 1 HET MG A 403 1 HETNAM MG MAGNESIUM ION FORMUL 2 MG 3(MG 2+) FORMUL 5 HOH *253(H2 O) HELIX 1 AA1 ARG A 88 LYS A 102 1 15 HELIX 2 AA2 ASP A 107 ALA A 121 1 15 HELIX 3 AA3 ARG A 123 LYS A 137 1 15 HELIX 4 AA4 ASN A 142 ALA A 156 1 15 HELIX 5 AA5 ARG A 158 LYS A 172 1 15 HELIX 6 AA6 ASP A 177 ALA A 191 1 15 HELIX 7 AA7 ARG A 193 LYS A 207 1 15 HELIX 8 AA8 ASN A 212 ALA A 226 1 15 HELIX 9 AA9 ARG A 228 LYS A 242 1 15 HELIX 10 AB1 ASP A 247 LYS A 260 1 14 LINK OE2AGLU A 132 MG MG A 402 1555 1555 2.83 LINK OE1AGLU A 202 MG MG A 402 1555 4455 2.68 LINK MG MG A 401 O HOH A 516 1555 4555 2.33 LINK MG MG A 401 O HOH A 524 1555 4555 2.39 LINK MG MG A 401 O HOH A 527 1555 4555 2.77 LINK MG MG A 401 O HOH A 529 1555 1555 2.54 LINK MG MG A 401 O HOH A 534 1555 1555 2.34 LINK MG MG A 401 O HOH A 536 1555 4555 2.45 LINK MG MG A 401 O HOH A 538 1555 4555 2.78 LINK MG MG A 401 O HOH A 543 1555 1555 2.59 LINK MG MG A 402 O HOH A 520 1555 4555 2.09 LINK MG MG A 402 O HOH A 551 1555 1555 2.97 LINK MG MG A 402 O HOH A 557 1555 4555 2.48 LINK MG MG A 403 O HOH A 506 1555 1555 2.26 LINK MG MG A 403 O HOH A 539 1555 1555 2.88 LINK MG MG A 403 O HOH A 546 1555 1555 2.51 LINK MG MG A 403 O HOH A 547 1555 4555 2.50 LINK MG MG A 403 O HOH A 548 1555 4555 2.26 LINK MG MG A 403 O HOH A 549 1555 1555 2.45 LINK MG MG A 403 O HOH A 556 1555 4555 2.15 LINK MG MG A 403 O HOH A 566 1555 4555 2.26 SITE 1 AC1 8 HOH A 516 HOH A 524 HOH A 527 HOH A 529 SITE 2 AC1 8 HOH A 534 HOH A 536 HOH A 538 HOH A 543 SITE 1 AC2 5 GLU A 132 GLU A 202 HOH A 520 HOH A 551 SITE 2 AC2 5 HOH A 557 SITE 1 AC3 8 HOH A 506 HOH A 539 HOH A 546 HOH A 547 SITE 2 AC3 8 HOH A 548 HOH A 549 HOH A 556 HOH A 566 CRYST1 54.280 74.930 86.700 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018423 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013346 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011534 0.00000