HEADER PROTEIN BINDING 13-MAY-14 4PK1 TITLE STRUCTURE OF BAMB FUSED TO A BAMA POTRA DOMAIN FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHIMERA PROTEIN OF OUTER MEMBRANE PROTEIN ASSEMBLY FACTORS COMPND 3 BAMA AND BAMB; COMPND 4 CHAIN: A; COMPND 5 FRAGMENT: UNP P0A940 RESIDUES 175-424,UNP P77774 RESIDUES 21-392; COMPND 6 SYNONYM: OMP85; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: BAMA, YAET, YZZN, YZZY, B0177, JW0172, BAMB, YFGL, B2512, SOURCE 6 JW2496; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS BAM COMPLEX, FUSION, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR K.B.JANSEN,M.C.SOUSA REVDAT 6 27-DEC-23 4PK1 1 REMARK REVDAT 5 11-DEC-19 4PK1 1 REMARK REVDAT 4 27-SEP-17 4PK1 1 SOURCE JRNL REMARK REVDAT 3 04-FEB-15 4PK1 1 JRNL REVDAT 2 17-DEC-14 4PK1 1 JRNL REVDAT 1 10-DEC-14 4PK1 0 JRNL AUTH K.B.JANSEN,S.L.BAKER,M.C.SOUSA JRNL TITL CRYSTAL STRUCTURE OF BAMB BOUND TO A PERIPLASMIC DOMAIN JRNL TITL 2 FRAGMENT OF BAMA, THE CENTRAL COMPONENT OF THE BETA-BARREL JRNL TITL 3 ASSEMBLY MACHINE. JRNL REF J.BIOL.CHEM. V. 290 2126 2015 JRNL REFN ESSN 1083-351X JRNL PMID 25468906 JRNL DOI 10.1074/JBC.M114.584524 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 9778 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.251 REMARK 3 FREE R VALUE : 0.281 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.290 REMARK 3 FREE R VALUE TEST SET COUNT : 517 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 3.4100 - 3.1000 0.96 2243 112 0.2961 0.3797 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 68.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 87.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PK1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-14. REMARK 100 THE DEPOSITION ID IS D_1000201546. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9870 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 35.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE BAMA-BAMB CHIMERA PROTEIN WAS REMARK 280 CRYSTALLIZED AT 16 DEGC BY SITTING DROP VAPOR DIFFUSION METHOD. REMARK 280 INITIAL CRYSTALLIZING CONDITIONS WERE REFINED IN A HANGING DROP REMARK 280 IN THE FOLLOWING SOLUTION: 1.4M AMMONIUM SULFATE, 9% 2-PROPANOL, REMARK 280 AND 0.1M SODIUM ACETATE PH 5.5. WE USED 1.5 UL OF THE 20MG/ML REMARK 280 PROTEIN MIXED WITH 1.5 UL MOTHER LIQUOR IN A RESERVOIR FILLED REMARK 280 WITH 500 UL PRECIPITANT SOLUTION, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.70500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 171 REMARK 465 ALA A 172 REMARK 465 MET A 173 REMARK 465 GLU A 174 REMARK 465 ALA A 175 REMARK 465 VAL A 203 REMARK 465 PRO A 204 REMARK 465 TRP A 205 REMARK 465 TRP A 206 REMARK 465 ASN A 207 REMARK 465 VAL A 208 REMARK 465 VAL A 209 REMARK 465 GLY A 210 REMARK 465 ASP A 211 REMARK 465 ARG A 212 REMARK 465 LYS A 213 REMARK 465 TYR A 214 REMARK 465 LEU A 287 REMARK 465 THR A 288 REMARK 465 LYS A 289 REMARK 465 ILE A 290 REMARK 465 GLU A 291 REMARK 465 PRO A 292 REMARK 465 GLY A 293 REMARK 465 PHE A 924 REMARK 465 TYR A 925 REMARK 465 VAL A 926 REMARK 465 ARG A 927 REMARK 465 LYS A 928 REMARK 465 ILE A 929 REMARK 465 ARG A 930 REMARK 465 PHE A 931 REMARK 465 GLU A 932 REMARK 465 GLY A 933 REMARK 465 ASN A 934 REMARK 465 ASP A 935 REMARK 465 THR A 936 REMARK 465 SER A 937 REMARK 465 LYS A 938 REMARK 465 ASP A 939 REMARK 465 ALA A 940 REMARK 465 VAL A 941 REMARK 465 LEU A 942 REMARK 465 ARG A 943 REMARK 465 ARG A 944 REMARK 465 GLU A 945 REMARK 465 MET A 946 REMARK 465 ARG A 947 REMARK 465 GLN A 948 REMARK 465 MET A 949 REMARK 465 GLU A 950 REMARK 465 GLY A 951 REMARK 465 ALA A 952 REMARK 465 TRP A 953 REMARK 465 LEU A 954 REMARK 465 GLY A 955 REMARK 465 SER A 956 REMARK 465 ASP A 957 REMARK 465 LEU A 958 REMARK 465 VAL A 959 REMARK 465 ASP A 960 REMARK 465 GLN A 961 REMARK 465 GLY A 962 REMARK 465 LYS A 963 REMARK 465 GLU A 964 REMARK 465 ARG A 965 REMARK 465 LEU A 966 REMARK 465 ASN A 967 REMARK 465 ARG A 968 REMARK 465 LEU A 969 REMARK 465 GLY A 970 REMARK 465 PHE A 971 REMARK 465 PHE A 972 REMARK 465 GLU A 973 REMARK 465 THR A 974 REMARK 465 VAL A 975 REMARK 465 ASP A 976 REMARK 465 THR A 977 REMARK 465 ASP A 978 REMARK 465 THR A 979 REMARK 465 GLN A 980 REMARK 465 ARG A 981 REMARK 465 VAL A 982 REMARK 465 PRO A 983 REMARK 465 GLY A 984 REMARK 465 SER A 985 REMARK 465 PRO A 986 REMARK 465 ASP A 987 REMARK 465 GLN A 988 REMARK 465 VAL A 989 REMARK 465 ASP A 990 REMARK 465 VAL A 991 REMARK 465 VAL A 992 REMARK 465 TYR A 993 REMARK 465 LYS A 994 REMARK 465 VAL A 995 REMARK 465 LYS A 996 REMARK 465 GLU A 997 REMARK 465 ARG A 998 REMARK 465 ASN A 999 REMARK 465 THR A 1000 REMARK 465 GLY A 1001 REMARK 465 PRO A 1002 REMARK 465 GLY A 1003 REMARK 465 ALA A 1004 REMARK 465 SER A 1005 REMARK 465 GLY A 1006 REMARK 465 GLY A 1007 REMARK 465 SER A 1008 REMARK 465 GLY A 1009 REMARK 465 GLY A 1010 REMARK 465 GLY A 1011 REMARK 465 SER A 1012 REMARK 465 GLY A 1013 REMARK 465 GLY A 1014 REMARK 465 GLY A 1015 REMARK 465 SER A 1016 REMARK 465 GLY A 1017 REMARK 465 GLY A 1018 REMARK 465 THR A 1019 REMARK 465 ALA A 1020 REMARK 465 SER A 1021 REMARK 465 LEU A 1022 REMARK 465 PHE A 1023 REMARK 465 ASN A 1024 REMARK 465 SER A 1025 REMARK 465 GLU A 1026 REMARK 465 GLU A 1027 REMARK 465 ASP A 1028 REMARK 465 VAL A 1029 REMARK 465 VAL A 1030 REMARK 465 LYS A 1031 REMARK 465 GLU A 1099 REMARK 465 LYS A 1100 REMARK 465 ASP A 1101 REMARK 465 GLY A 1102 REMARK 465 TRP A 1103 REMARK 465 PHE A 1104 REMARK 465 SER A 1105 REMARK 465 LYS A 1106 REMARK 465 GLN A 1234 REMARK 465 ALA A 1235 REMARK 465 THR A 1236 REMARK 465 GLY A 1237 REMARK 465 SER A 1238 REMARK 465 THR A 1239 REMARK 465 GLU A 1240 REMARK 465 ILE A 1241 REMARK 465 ASP A 1242 REMARK 465 ARG A 1243 REMARK 465 LEU A 1244 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A1107 CG CD OE1 OE2 REMARK 470 ARG A1392 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD12 LEU A 1035 HH21 ARG A 1325 1.30 REMARK 500 HZ1 LYS A 1082 OE1 GLU A 1091 1.36 REMARK 500 OD1 ASP A 1353 H ARG A 1355 1.42 REMARK 500 H ASN A 1264 OE1 GLN A 1301 1.46 REMARK 500 HD12 LEU A 1035 NH2 ARG A 1325 1.46 REMARK 500 OD1 ASP A 1248 H THR A 1249 1.46 REMARK 500 HZ2 LYS A 1182 OE2 GLU A 1222 1.50 REMARK 500 HE21 GLN A 1230 O GLY A 1275 1.52 REMARK 500 HG1 THR A 1116 O PRO A 1155 1.52 REMARK 500 O ILE A 194 H PHE A 197 1.54 REMARK 500 OD2 ASP A 1341 HE2 HIS A 1347 1.55 REMARK 500 OE1 GLN A 179 HH22 ARG A 1077 1.56 REMARK 500 O ASN A 1085 H GLY A 1089 1.57 REMARK 500 OG1 THR A 1328 H GLY A 1340 1.57 REMARK 500 OD1 ASP A 1188 H MET A 1189 1.57 REMARK 500 HG1 THR A 1050 O GLY A 1089 1.60 REMARK 500 OD1 ASP A 1271 OG SER A 1274 1.84 REMARK 500 OD2 ASP A 1138 OG1 THR A 1140 2.07 REMARK 500 O SER A 1245 OD1 ASN A 1264 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A1044 C - N - CA ANGL. DEV. = -11.0 DEGREES REMARK 500 LEU A1194 CA - CB - CG ANGL. DEV. = 18.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 251 -9.75 87.11 REMARK 500 LYS A 252 112.00 -165.51 REMARK 500 TYR A 317 94.87 -66.67 REMARK 500 TYR A1060 99.47 -59.88 REMARK 500 ASN A1070 10.69 86.65 REMARK 500 GLU A1091 150.39 -48.95 REMARK 500 LEU A1097 55.43 -109.26 REMARK 500 ASP A1159 44.02 73.03 REMARK 500 ASP A1188 157.30 101.09 REMARK 500 PHE A1204 70.95 52.52 REMARK 500 ILE A1227 -83.93 -88.30 REMARK 500 ASN A1264 -164.85 67.39 REMARK 500 ARG A1281 -158.25 -140.61 REMARK 500 VAL A1291 74.14 -113.12 REMARK 500 ASN A1294 41.40 -101.86 REMARK 500 LEU A1326 76.57 56.56 REMARK 500 ASP A1353 -50.94 -133.77 REMARK 500 GLN A1368 -26.43 -147.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 1040 GLN A 1041 143.75 REMARK 500 LEU A 1194 ARG A 1195 140.09 REMARK 500 ARG A 1195 GLY A 1196 -148.03 REMARK 500 GLY A 1284 SER A 1285 146.73 REMARK 500 REMARK 500 REMARK: NULL DBREF 4PK1 A 175 1001 UNP P0A940 BAMA_ECOLI 175 424 DBREF 4PK1 A 1021 1392 UNP P77774 BAMB_ECOLI 21 392 SEQADV 4PK1 GLY A 171 UNP P0A940 EXPRESSION TAG SEQADV 4PK1 ALA A 172 UNP P0A940 EXPRESSION TAG SEQADV 4PK1 MET A 173 UNP P0A940 EXPRESSION TAG SEQADV 4PK1 GLU A 174 UNP P0A940 EXPRESSION TAG SEQADV 4PK1 PRO A 1002 UNP P0A940 LINKER SEQADV 4PK1 GLY A 1003 UNP P0A940 LINKER SEQADV 4PK1 ALA A 1004 UNP P0A940 LINKER SEQADV 4PK1 SER A 1005 UNP P0A940 LINKER SEQADV 4PK1 GLY A 1006 UNP P0A940 LINKER SEQADV 4PK1 GLY A 1007 UNP P0A940 LINKER SEQADV 4PK1 SER A 1008 UNP P0A940 LINKER SEQADV 4PK1 GLY A 1009 UNP P0A940 LINKER SEQADV 4PK1 GLY A 1010 UNP P0A940 LINKER SEQADV 4PK1 GLY A 1011 UNP P0A940 LINKER SEQADV 4PK1 SER A 1012 UNP P0A940 LINKER SEQADV 4PK1 GLY A 1013 UNP P0A940 LINKER SEQADV 4PK1 GLY A 1014 UNP P0A940 LINKER SEQADV 4PK1 GLY A 1015 UNP P0A940 LINKER SEQADV 4PK1 SER A 1016 UNP P0A940 LINKER SEQADV 4PK1 GLY A 1017 UNP P0A940 LINKER SEQADV 4PK1 GLY A 1018 UNP P0A940 LINKER SEQADV 4PK1 THR A 1019 UNP P0A940 LINKER SEQADV 4PK1 ALA A 1020 UNP P0A940 LINKER SEQRES 1 A 645 GLY ALA MET GLU ALA GLU ILE GLN GLN ILE ASN ILE VAL SEQRES 2 A 645 GLY ASN HIS ALA PHE THR THR ASP GLU LEU ILE SER HIS SEQRES 3 A 645 PHE GLN LEU ARG ASP GLU VAL PRO TRP TRP ASN VAL VAL SEQRES 4 A 645 GLY ASP ARG LYS TYR GLN LYS GLN LYS LEU ALA GLY ASP SEQRES 5 A 645 LEU GLU THR LEU ARG SER TYR TYR LEU ASP ARG GLY TYR SEQRES 6 A 645 ALA ARG PHE ASN ILE ASP SER THR GLN VAL SER LEU THR SEQRES 7 A 645 PRO ASP LYS LYS GLY ILE TYR VAL THR VAL ASN ILE THR SEQRES 8 A 645 GLU GLY ASP GLN TYR LYS LEU SER GLY VAL GLU VAL SER SEQRES 9 A 645 GLY ASN LEU ALA GLY HIS SER ALA GLU ILE GLU GLN LEU SEQRES 10 A 645 THR LYS ILE GLU PRO GLY GLU LEU TYR ASN GLY THR LYS SEQRES 11 A 645 VAL THR LYS MET GLU ASP ASP ILE LYS LYS LEU LEU GLY SEQRES 12 A 645 ARG TYR GLY TYR ALA TYR PRO ARG VAL GLN SER MET PRO SEQRES 13 A 645 GLU ILE ASN ASP ALA ASP LYS THR VAL LYS LEU ARG VAL SEQRES 14 A 645 ASN VAL ASP ALA GLY ASN ARG PHE TYR VAL ARG LYS ILE SEQRES 15 A 645 ARG PHE GLU GLY ASN ASP THR SER LYS ASP ALA VAL LEU SEQRES 16 A 645 ARG ARG GLU MET ARG GLN MET GLU GLY ALA TRP LEU GLY SEQRES 17 A 645 SER ASP LEU VAL ASP GLN GLY LYS GLU ARG LEU ASN ARG SEQRES 18 A 645 LEU GLY PHE PHE GLU THR VAL ASP THR ASP THR GLN ARG SEQRES 19 A 645 VAL PRO GLY SER PRO ASP GLN VAL ASP VAL VAL TYR LYS SEQRES 20 A 645 VAL LYS GLU ARG ASN THR GLY PRO GLY ALA SER GLY GLY SEQRES 21 A 645 SER GLY GLY GLY SER GLY GLY GLY SER GLY GLY THR ALA SEQRES 22 A 645 SER LEU PHE ASN SER GLU GLU ASP VAL VAL LYS MET SER SEQRES 23 A 645 PRO LEU PRO THR VAL GLU ASN GLN PHE THR PRO THR THR SEQRES 24 A 645 ALA TRP SER THR SER VAL GLY SER GLY ILE GLY ASN PHE SEQRES 25 A 645 TYR SER ASN LEU HIS PRO ALA LEU ALA ASP ASN VAL VAL SEQRES 26 A 645 TYR ALA ALA ASP ARG ALA GLY LEU VAL LYS ALA LEU ASN SEQRES 27 A 645 ALA ASP ASP GLY LYS GLU ILE TRP SER VAL SER LEU ALA SEQRES 28 A 645 GLU LYS ASP GLY TRP PHE SER LYS GLU PRO ALA LEU LEU SEQRES 29 A 645 SER GLY GLY VAL THR VAL SER GLY GLY HIS VAL TYR ILE SEQRES 30 A 645 GLY SER GLU LYS ALA GLN VAL TYR ALA LEU ASN THR SER SEQRES 31 A 645 ASP GLY THR VAL ALA TRP GLN THR LYS VAL ALA GLY GLU SEQRES 32 A 645 ALA LEU SER ARG PRO VAL VAL SER ASP GLY LEU VAL LEU SEQRES 33 A 645 ILE HIS THR SER ASN GLY GLN LEU GLN ALA LEU ASN GLU SEQRES 34 A 645 ALA ASP GLY ALA VAL LYS TRP THR VAL ASN LEU ASP MET SEQRES 35 A 645 PRO SER LEU SER LEU ARG GLY GLU SER ALA PRO THR THR SEQRES 36 A 645 ALA PHE GLY ALA ALA VAL VAL GLY GLY ASP ASN GLY ARG SEQRES 37 A 645 VAL SER ALA VAL LEU MET GLU GLN GLY GLN MET ILE TRP SEQRES 38 A 645 GLN GLN ARG ILE SER GLN ALA THR GLY SER THR GLU ILE SEQRES 39 A 645 ASP ARG LEU SER ASP VAL ASP THR THR PRO VAL VAL VAL SEQRES 40 A 645 ASN GLY VAL VAL PHE ALA LEU ALA TYR ASN GLY ASN LEU SEQRES 41 A 645 THR ALA LEU ASP LEU ARG SER GLY GLN ILE MET TRP LYS SEQRES 42 A 645 ARG GLU LEU GLY SER VAL ASN ASP PHE ILE VAL ASP GLY SEQRES 43 A 645 ASN ARG ILE TYR LEU VAL ASP GLN ASN ASP ARG VAL MET SEQRES 44 A 645 ALA LEU THR ILE ASP GLY GLY VAL THR LEU TRP THR GLN SEQRES 45 A 645 SER ASP LEU LEU HIS ARG LEU LEU THR SER PRO VAL LEU SEQRES 46 A 645 TYR ASN GLY ASN LEU VAL VAL GLY ASP SER GLU GLY TYR SEQRES 47 A 645 LEU HIS TRP ILE ASN VAL GLU ASP GLY ARG PHE VAL ALA SEQRES 48 A 645 GLN GLN LYS VAL ASP SER SER GLY PHE GLN THR GLU PRO SEQRES 49 A 645 VAL ALA ALA ASP GLY LYS LEU LEU ILE GLN ALA LYS ASP SEQRES 50 A 645 GLY THR VAL TYR SER ILE THR ARG HELIX 1 AA1 THR A 189 SER A 195 1 7 HELIX 2 AA2 LYS A 216 ASP A 232 1 17 HELIX 3 AA3 ASN A 297 TYR A 315 1 19 SHEET 1 AA1 4 ILE A 177 VAL A 183 0 SHEET 2 AA1 4 ILE A 254 THR A 261 1 O VAL A 256 N ASN A 181 SHEET 3 AA1 4 ASN A 239 SER A 246 -1 N SER A 246 O TYR A 255 SHEET 4 AA1 4 LEU A1192 SER A1193 1 O SER A1193 N VAL A 245 SHEET 1 AA2 3 LYS A 267 VAL A 273 0 SHEET 2 AA2 3 THR A 334 VAL A 341 1 O VAL A 335 N LYS A 267 SHEET 3 AA2 3 VAL A 322 ASN A 329 -1 N GLU A 327 O LYS A 336 SHEET 1 AA3 4 THR A1045 THR A1050 0 SHEET 2 AA3 4 VAL A1387 THR A1391 -1 O SER A1389 N ALA A1047 SHEET 3 AA3 4 LYS A1377 GLN A1381 -1 N ILE A1380 O TYR A1388 SHEET 4 AA3 4 VAL A1372 ALA A1374 -1 N VAL A1372 O LEU A1379 SHEET 1 AA4 4 LEU A1067 ALA A1068 0 SHEET 2 AA4 4 VAL A1071 ALA A1075 -1 O VAL A1071 N ALA A1068 SHEET 3 AA4 4 VAL A1081 ASN A1085 -1 O LEU A1084 N VAL A1072 SHEET 4 AA4 4 GLU A1091 VAL A1095 -1 O VAL A1095 N VAL A1081 SHEET 1 AA5 4 LEU A1111 SER A1118 0 SHEET 2 AA5 4 HIS A1121 SER A1126 -1 O GLY A1125 N GLY A1113 SHEET 3 AA5 4 GLN A1130 ASN A1135 -1 O TYR A1132 N ILE A1124 SHEET 4 AA5 4 VAL A1141 LYS A1146 -1 O ALA A1142 N ALA A1133 SHEET 1 AA6 3 ILE A1164 THR A1166 0 SHEET 2 AA6 3 GLN A1170 LEU A1174 -1 O GLN A1170 N THR A1166 SHEET 3 AA6 3 VAL A1181 ASN A1186 -1 O VAL A1185 N LEU A1171 SHEET 1 AA7 4 THR A1201 THR A1202 0 SHEET 2 AA7 4 ALA A1206 VAL A1209 -1 O VAL A1208 N THR A1201 SHEET 3 AA7 4 ARG A1215 LEU A1220 -1 O SER A1217 N VAL A1209 SHEET 4 AA7 4 GLN A1225 ARG A1231 -1 O TRP A1228 N ALA A1218 SHEET 1 AA8 4 ASP A1248 VAL A1253 0 SHEET 2 AA8 4 VAL A1257 ALA A1262 -1 O PHE A1259 N VAL A1252 SHEET 3 AA8 4 THR A1268 ASP A1271 -1 O LEU A1270 N VAL A1258 SHEET 4 AA8 4 ILE A1277 TRP A1279 -1 O MET A1278 N ALA A1269 SHEET 1 AA9 3 ARG A1295 VAL A1299 0 SHEET 2 AA9 3 VAL A1305 THR A1309 -1 O LEU A1308 N ILE A1296 SHEET 3 AA9 3 THR A1315 GLN A1319 -1 O LEU A1316 N ALA A1307 SHEET 1 AB1 4 VAL A1331 TYR A1333 0 SHEET 2 AB1 4 ASN A1336 GLY A1340 -1 O ASN A1336 N TYR A1333 SHEET 3 AB1 4 TYR A1345 ILE A1349 -1 O HIS A1347 N VAL A1339 SHEET 4 AB1 4 PHE A1356 LYS A1361 -1 O VAL A1357 N TRP A1348 CISPEP 1 LEU A 277 ALA A 278 0 -9.06 CISPEP 2 GLN A 1041 PHE A 1042 0 0.48 CISPEP 3 GLY A 1114 VAL A 1115 0 -6.64 CISPEP 4 GLY A 1196 GLU A 1197 0 2.06 CISPEP 5 ASP A 1212 ASN A 1213 0 14.19 CISPEP 6 GLU A 1222 GLN A 1223 0 8.21 CISPEP 7 VAL A 1254 ASN A 1255 0 -6.50 CISPEP 8 GLY A 1265 ASN A 1266 0 2.16 CRYST1 49.270 91.410 61.210 90.00 92.85 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020296 0.000000 0.001010 0.00000 SCALE2 0.000000 0.010940 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016357 0.00000