HEADER SIGNALING PROTEIN/INHIBITOR 15-MAY-14 4PKL TITLE BROMODOMAIN OF TRYPANOSOMA BRUCEI BDF2 WITH IBET-151 COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN FACTOR 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMODOMAIN, UNP RESIDUES 9-123; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TRYPANOSOMA BRUCEI BRUCEI; SOURCE 3 ORGANISM_TAXID: 999953; SOURCE 4 STRAIN: 927/4 GUTAT10.1; SOURCE 5 GENE: TB10.6K15.3240; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALING PROTEIN, INHIBITOR, HISTONE, EPIGENETIC READER, SIGNALING KEYWDS 2 PROTEIN-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR E.W.DEBLER REVDAT 4 27-DEC-23 4PKL 1 REMARK REVDAT 3 16-SEP-20 4PKL 1 JRNL LINK REVDAT 2 27-SEP-17 4PKL 1 REMARK REVDAT 1 18-NOV-15 4PKL 0 JRNL AUTH D.SCHULZ,M.R.MUGNIER,E.M.PAULSEN,H.S.KIM,C.W.CHUNG, JRNL AUTH 2 D.F.TOUGH,I.RIOJA,R.K.PRINJHA,F.N.PAPAVASILIOU,E.W.DEBLER JRNL TITL BROMODOMAIN PROTEINS CONTRIBUTE TO MAINTENANCE OF JRNL TITL 2 BLOODSTREAM FORM STAGE IDENTITY IN THE AFRICAN TRYPANOSOME. JRNL REF PLOS BIOL. V. 13 02316 2015 JRNL REFN ESSN 1545-7885 JRNL PMID 26646171 JRNL DOI 10.1371/JOURNAL.PBIO.1002316 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.9_1692) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.06 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 59801 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.400 REMARK 3 FREE R VALUE TEST SET COUNT : 2035 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.0681 - 3.0837 0.99 4109 101 0.1552 0.1489 REMARK 3 2 3.0837 - 2.4480 1.00 3896 203 0.1682 0.1690 REMARK 3 3 2.4480 - 2.1386 1.00 3943 102 0.1580 0.1817 REMARK 3 4 2.1386 - 1.9431 1.00 3809 203 0.1589 0.1798 REMARK 3 5 1.9431 - 1.8038 1.00 3953 102 0.1701 0.1963 REMARK 3 6 1.8038 - 1.6975 1.00 3915 102 0.1647 0.2055 REMARK 3 7 1.6975 - 1.6125 1.00 3797 201 0.1657 0.1998 REMARK 3 8 1.6125 - 1.5423 1.00 3860 103 0.1635 0.2096 REMARK 3 9 1.5423 - 1.4829 1.00 3890 103 0.1739 0.1940 REMARK 3 10 1.4829 - 1.4318 1.00 3777 201 0.1880 0.1955 REMARK 3 11 1.4318 - 1.3870 1.00 3827 104 0.2129 0.2323 REMARK 3 12 1.3870 - 1.3473 1.00 3859 102 0.2210 0.2142 REMARK 3 13 1.3473 - 1.3119 0.99 3862 103 0.2376 0.2280 REMARK 3 14 1.3119 - 1.2799 0.99 3762 203 0.2525 0.2364 REMARK 3 15 1.2799 - 1.2508 0.91 3507 102 0.2569 0.2585 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1886 REMARK 3 ANGLE : 1.084 2571 REMARK 3 CHIRALITY : 0.048 273 REMARK 3 PLANARITY : 0.005 322 REMARK 3 DIHEDRAL : 13.237 670 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 8:12) REMARK 3 ORIGIN FOR THE GROUP (A): 43.4032 28.9071 11.7443 REMARK 3 T TENSOR REMARK 3 T11: 0.2672 T22: 0.2221 REMARK 3 T33: 0.2342 T12: -0.0355 REMARK 3 T13: -0.0234 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 7.0101 L22: 2.7279 REMARK 3 L33: 2.4046 L12: 3.8716 REMARK 3 L13: 3.1263 L23: 0.9746 REMARK 3 S TENSOR REMARK 3 S11: 0.3015 S12: -0.0592 S13: -0.7567 REMARK 3 S21: -0.0198 S22: -0.2580 S23: 0.3133 REMARK 3 S31: 0.8419 S32: -0.4565 S33: -0.0548 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 13:37) REMARK 3 ORIGIN FOR THE GROUP (A): 50.7030 46.6509 14.8982 REMARK 3 T TENSOR REMARK 3 T11: 0.1194 T22: 0.1195 REMARK 3 T33: 0.1121 T12: 0.0022 REMARK 3 T13: 0.0168 T23: -0.0094 REMARK 3 L TENSOR REMARK 3 L11: 1.4878 L22: 3.4107 REMARK 3 L33: 1.3786 L12: 0.9330 REMARK 3 L13: -0.4154 L23: -1.3067 REMARK 3 S TENSOR REMARK 3 S11: 0.0713 S12: -0.0586 S13: 0.0998 REMARK 3 S21: 0.1912 S22: -0.0452 S23: 0.0689 REMARK 3 S31: -0.0990 S32: 0.0165 S33: -0.0369 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 38:42) REMARK 3 ORIGIN FOR THE GROUP (A): 48.8548 62.7531 3.3697 REMARK 3 T TENSOR REMARK 3 T11: 0.2025 T22: 0.1906 REMARK 3 T33: 0.3888 T12: 0.0076 REMARK 3 T13: -0.0088 T23: 0.1506 REMARK 3 L TENSOR REMARK 3 L11: 5.6437 L22: 6.8176 REMARK 3 L33: 2.8950 L12: 0.6273 REMARK 3 L13: -1.4216 L23: 0.5192 REMARK 3 S TENSOR REMARK 3 S11: 0.0753 S12: -0.1568 S13: 0.0066 REMARK 3 S21: -0.0014 S22: -0.0164 S23: 0.4584 REMARK 3 S31: -0.4470 S32: -0.0486 S33: -0.0682 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 43:51) REMARK 3 ORIGIN FOR THE GROUP (A): 50.5843 52.7114 -1.8317 REMARK 3 T TENSOR REMARK 3 T11: 0.2044 T22: 0.2339 REMARK 3 T33: 0.1547 T12: -0.0340 REMARK 3 T13: -0.0040 T23: 0.0607 REMARK 3 L TENSOR REMARK 3 L11: 5.1595 L22: 5.0291 REMARK 3 L33: 3.0434 L12: -0.5296 REMARK 3 L13: 0.6008 L23: 0.9235 REMARK 3 S TENSOR REMARK 3 S11: -0.0738 S12: 0.8922 S13: 0.4204 REMARK 3 S21: -0.4045 S22: 0.2119 S23: 0.3531 REMARK 3 S31: 0.4376 S32: -0.4116 S33: -0.0867 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 52:76) REMARK 3 ORIGIN FOR THE GROUP (A): 45.5299 39.0511 8.0644 REMARK 3 T TENSOR REMARK 3 T11: 0.1154 T22: 0.1266 REMARK 3 T33: 0.1108 T12: -0.0076 REMARK 3 T13: -0.0029 T23: -0.0049 REMARK 3 L TENSOR REMARK 3 L11: 2.2619 L22: 3.4125 REMARK 3 L33: 1.5083 L12: 1.2318 REMARK 3 L13: 0.2776 L23: -0.0784 REMARK 3 S TENSOR REMARK 3 S11: 0.0114 S12: 0.0669 S13: 0.0209 REMARK 3 S21: -0.1057 S22: -0.0241 S23: 0.2117 REMARK 3 S31: 0.0020 S32: -0.1351 S33: 0.0169 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 77:99) REMARK 3 ORIGIN FOR THE GROUP (A): 60.8141 50.6086 6.9906 REMARK 3 T TENSOR REMARK 3 T11: 0.0665 T22: 0.0842 REMARK 3 T33: 0.1045 T12: 0.0017 REMARK 3 T13: 0.0237 T23: 0.0089 REMARK 3 L TENSOR REMARK 3 L11: 1.5585 L22: 3.9568 REMARK 3 L33: 3.2304 L12: 0.3342 REMARK 3 L13: -0.3810 L23: -0.6955 REMARK 3 S TENSOR REMARK 3 S11: -0.0000 S12: 0.0010 S13: 0.0421 REMARK 3 S21: -0.0860 S22: -0.0969 S23: -0.1856 REMARK 3 S31: 0.0823 S32: 0.0539 S33: 0.0766 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 100:104) REMARK 3 ORIGIN FOR THE GROUP (A): 61.7943 39.3097 10.0560 REMARK 3 T TENSOR REMARK 3 T11: 0.1651 T22: 0.1690 REMARK 3 T33: 0.2206 T12: 0.0239 REMARK 3 T13: 0.0530 T23: 0.0231 REMARK 3 L TENSOR REMARK 3 L11: 3.1553 L22: 0.9191 REMARK 3 L33: 3.2418 L12: 1.0521 REMARK 3 L13: 2.8667 L23: 1.4473 REMARK 3 S TENSOR REMARK 3 S11: -0.0479 S12: 0.3593 S13: -0.0217 REMARK 3 S21: -0.4501 S22: -0.1059 S23: -0.8015 REMARK 3 S31: 0.2701 S32: 0.5067 S33: 0.1608 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 105:114) REMARK 3 ORIGIN FOR THE GROUP (A): 55.8539 32.2273 15.0871 REMARK 3 T TENSOR REMARK 3 T11: 0.1242 T22: 0.1159 REMARK 3 T33: 0.1183 T12: 0.0128 REMARK 3 T13: 0.0160 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 4.3694 L22: 8.5223 REMARK 3 L33: 5.3919 L12: 5.0977 REMARK 3 L13: 3.8507 L23: 2.8090 REMARK 3 S TENSOR REMARK 3 S11: -0.0957 S12: 0.0920 S13: -0.2850 REMARK 3 S21: -0.0079 S22: 0.0964 S23: -0.1831 REMARK 3 S31: 0.2118 S32: 0.0137 S33: -0.0047 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 9:20) REMARK 3 ORIGIN FOR THE GROUP (A): 60.6810 43.5259 45.4155 REMARK 3 T TENSOR REMARK 3 T11: 0.2151 T22: 0.2901 REMARK 3 T33: 0.1898 T12: -0.0833 REMARK 3 T13: -0.0331 T23: 0.0008 REMARK 3 L TENSOR REMARK 3 L11: 2.7132 L22: 4.4938 REMARK 3 L33: 4.1190 L12: -0.1095 REMARK 3 L13: 1.0955 L23: 1.1189 REMARK 3 S TENSOR REMARK 3 S11: 0.0429 S12: -0.5728 S13: 0.2342 REMARK 3 S21: 0.6276 S22: 0.0477 S23: -0.2354 REMARK 3 S31: -0.2423 S32: 0.3201 S33: -0.1013 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 21:34) REMARK 3 ORIGIN FOR THE GROUP (A): 55.8801 41.3003 30.8960 REMARK 3 T TENSOR REMARK 3 T11: 0.0977 T22: 0.1231 REMARK 3 T33: 0.0852 T12: -0.0285 REMARK 3 T13: 0.0092 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 3.0606 L22: 4.7618 REMARK 3 L33: 4.6239 L12: 0.7455 REMARK 3 L13: -0.7834 L23: 0.7117 REMARK 3 S TENSOR REMARK 3 S11: 0.0649 S12: -0.0838 S13: 0.0111 REMARK 3 S21: 0.1266 S22: -0.0016 S23: -0.1684 REMARK 3 S31: -0.0811 S32: 0.3229 S33: -0.0188 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 35:40) REMARK 3 ORIGIN FOR THE GROUP (A): 42.9906 50.0081 23.8779 REMARK 3 T TENSOR REMARK 3 T11: 0.4641 T22: 0.3868 REMARK 3 T33: 0.4273 T12: 0.1609 REMARK 3 T13: 0.1433 T23: -0.0186 REMARK 3 L TENSOR REMARK 3 L11: 4.8313 L22: 2.5853 REMARK 3 L33: 4.4023 L12: 2.4722 REMARK 3 L13: 0.4464 L23: 2.6280 REMARK 3 S TENSOR REMARK 3 S11: 0.7030 S12: 0.8892 S13: 0.6475 REMARK 3 S21: -0.4602 S22: 0.4578 S23: -0.2307 REMARK 3 S31: -1.4016 S32: -0.2524 S33: -0.7284 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 41:49) REMARK 3 ORIGIN FOR THE GROUP (A): 37.4794 45.3355 31.3768 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.2808 REMARK 3 T33: 0.3487 T12: 0.0927 REMARK 3 T13: 0.0406 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 7.2129 L22: 5.9462 REMARK 3 L33: 2.3318 L12: -0.2965 REMARK 3 L13: 2.1634 L23: 1.1810 REMARK 3 S TENSOR REMARK 3 S11: 0.0081 S12: 0.1623 S13: 0.4079 REMARK 3 S21: -0.0618 S22: -0.1394 S23: 0.9115 REMARK 3 S31: -0.2015 S32: -0.6063 S33: 0.0215 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 50:103) REMARK 3 ORIGIN FOR THE GROUP (A): 49.4215 39.7954 37.4266 REMARK 3 T TENSOR REMARK 3 T11: 0.1287 T22: 0.1215 REMARK 3 T33: 0.1033 T12: -0.0123 REMARK 3 T13: 0.0317 T23: -0.0095 REMARK 3 L TENSOR REMARK 3 L11: 1.6917 L22: 1.6639 REMARK 3 L33: 2.8029 L12: 0.2453 REMARK 3 L13: 0.5569 L23: 0.3836 REMARK 3 S TENSOR REMARK 3 S11: 0.0128 S12: -0.1545 S13: 0.1166 REMARK 3 S21: 0.1420 S22: -0.0267 S23: 0.0125 REMARK 3 S31: -0.2359 S32: -0.0257 S33: 0.0277 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN B AND RESID 104:108) REMARK 3 ORIGIN FOR THE GROUP (A): 57.6080 31.8986 44.5950 REMARK 3 T TENSOR REMARK 3 T11: 0.2890 T22: 0.2213 REMARK 3 T33: 0.2386 T12: 0.0017 REMARK 3 T13: -0.0745 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 4.7051 L22: 2.7380 REMARK 3 L33: 4.3159 L12: 1.2005 REMARK 3 L13: 3.9908 L23: -0.4863 REMARK 3 S TENSOR REMARK 3 S11: 0.6618 S12: -0.1333 S13: -1.0809 REMARK 3 S21: 0.6640 S22: -0.3068 S23: -0.2454 REMARK 3 S31: 0.5941 S32: 0.4867 S33: -0.1736 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN B AND RESID 109:114) REMARK 3 ORIGIN FOR THE GROUP (A): 59.6376 35.6504 48.2089 REMARK 3 T TENSOR REMARK 3 T11: 0.3012 T22: 0.3383 REMARK 3 T33: 0.2560 T12: -0.0934 REMARK 3 T13: -0.0835 T23: 0.0613 REMARK 3 L TENSOR REMARK 3 L11: 8.0846 L22: 6.0566 REMARK 3 L33: 2.1765 L12: -1.8725 REMARK 3 L13: -2.7557 L23: 2.2874 REMARK 3 S TENSOR REMARK 3 S11: 0.2876 S12: -0.4763 S13: -0.7491 REMARK 3 S21: 0.5670 S22: -0.3430 S23: -0.1549 REMARK 3 S31: 0.4229 S32: 0.0761 S33: 0.0656 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4PKL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60028 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 37.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.94600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM POTASSIUM PHOSPHATE PH 6.6, REMARK 280 ACETATE PH 4.1, 1-PROPANOL, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.93450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.05850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.04550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 31.05850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.93450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.04550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 115 REMARK 465 ASP A 116 REMARK 465 ASP A 117 REMARK 465 GLU A 118 REMARK 465 ALA A 119 REMARK 465 TYR A 120 REMARK 465 ILE A 121 REMARK 465 PRO A 122 REMARK 465 SER A 123 REMARK 465 GLY B 5 REMARK 465 PRO B 6 REMARK 465 HIS B 7 REMARK 465 MET B 8 REMARK 465 ASP B 117 REMARK 465 GLU B 118 REMARK 465 ALA B 119 REMARK 465 TYR B 120 REMARK 465 ILE B 121 REMARK 465 PRO B 122 REMARK 465 SER B 123 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 353 O HOH A 356 2.06 REMARK 500 OE2 GLU B 39 O HOH B 397 2.16 REMARK 500 NE2 HIS B 33 O1 GOL B 203 2.18 REMARK 500 O HOH A 456 O HOH A 457 2.19 REMARK 500 O HOH A 456 O HOH A 459 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 353 O HOH B 305 3755 2.00 REMARK 500 O HOH A 356 O HOH B 314 3755 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 454 DISTANCE = 6.11 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 203 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LEU A 83 O REMARK 620 2 GLU A 84 O 79.8 REMARK 620 3 ASN A 86 O 75.1 86.5 REMARK 620 4 HOH A 360 O 112.4 73.3 156.2 REMARK 620 5 HOH A 420 O 72.8 128.2 125.6 77.7 REMARK 620 6 HOH B 334 O 150.7 77.2 85.4 78.1 136.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 202 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 341 O REMARK 620 2 LEU B 83 O 91.1 REMARK 620 3 GLU B 84 O 93.8 75.0 REMARK 620 4 ASN B 86 O 165.6 79.5 94.2 REMARK 620 5 HOH B 348 O 86.4 153.1 131.9 97.0 REMARK 620 6 HOH B 391 O 118.5 129.2 63.5 75.8 74.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1GH A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PO4 A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 1GH B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue K B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 203 DBREF 4PKL A 9 123 UNP Q38AM1 Q38AM1_TRYB2 9 123 DBREF 4PKL B 9 123 UNP Q38AM1 Q38AM1_TRYB2 9 123 SEQADV 4PKL GLY A 5 UNP Q38AM1 EXPRESSION TAG SEQADV 4PKL PRO A 6 UNP Q38AM1 EXPRESSION TAG SEQADV 4PKL HIS A 7 UNP Q38AM1 EXPRESSION TAG SEQADV 4PKL MET A 8 UNP Q38AM1 EXPRESSION TAG SEQADV 4PKL GLY B 5 UNP Q38AM1 EXPRESSION TAG SEQADV 4PKL PRO B 6 UNP Q38AM1 EXPRESSION TAG SEQADV 4PKL HIS B 7 UNP Q38AM1 EXPRESSION TAG SEQADV 4PKL MET B 8 UNP Q38AM1 EXPRESSION TAG SEQRES 1 A 119 GLY PRO HIS MET SER PHE ASN LYS ASN GLY CYS LEU VAL SEQRES 2 A 119 PHE VAL SER ARG LEU TRP ASP LEU ASP LYS LEU GLY MET SEQRES 3 A 119 PHE HIS HIS PRO VAL SER ALA GLU GLU LEU PRO ASP TYR SEQRES 4 A 119 HIS THR VAL ILE LYS ARG PRO VAL ASP LEU SER SER ILE SEQRES 5 A 119 ARG ASP GLY ILE GLU LYS GLY THR TYR ALA THR ASP VAL SEQRES 6 A 119 ASP VAL GLN ASN ASP VAL ALA ARG MET ILE THR ASN ALA SEQRES 7 A 119 LEU GLU TYR ASN ALA LYS GLY SER THR TRP TYR GLN GLU SEQRES 8 A 119 ALA MET SER PHE ARG LYS THR TYR LEU ASP LEU ALA ARG SEQRES 9 A 119 GLN SER GLY LEU VAL VAL ASP ASP ASP GLU ALA TYR ILE SEQRES 10 A 119 PRO SER SEQRES 1 B 119 GLY PRO HIS MET SER PHE ASN LYS ASN GLY CYS LEU VAL SEQRES 2 B 119 PHE VAL SER ARG LEU TRP ASP LEU ASP LYS LEU GLY MET SEQRES 3 B 119 PHE HIS HIS PRO VAL SER ALA GLU GLU LEU PRO ASP TYR SEQRES 4 B 119 HIS THR VAL ILE LYS ARG PRO VAL ASP LEU SER SER ILE SEQRES 5 B 119 ARG ASP GLY ILE GLU LYS GLY THR TYR ALA THR ASP VAL SEQRES 6 B 119 ASP VAL GLN ASN ASP VAL ALA ARG MET ILE THR ASN ALA SEQRES 7 B 119 LEU GLU TYR ASN ALA LYS GLY SER THR TRP TYR GLN GLU SEQRES 8 B 119 ALA MET SER PHE ARG LYS THR TYR LEU ASP LEU ALA ARG SEQRES 9 B 119 GLN SER GLY LEU VAL VAL ASP ASP ASP GLU ALA TYR ILE SEQRES 10 B 119 PRO SER HET 1GH A 201 31 HET PO4 A 202 5 HET K A 203 1 HET CL A 204 1 HET 1GH B 201 31 HET K B 202 1 HET GOL B 203 6 HETNAM 1GH 7-(3,5-DIMETHYL-1,2-OXAZOL-4-YL)-8-METHOXY-1-[(1R)-1- HETNAM 2 1GH (PYRIDIN-2-YL)ETHYL]-1H,2H,3H-IMIDAZO[4,5-C]QUINOLIN- HETNAM 3 1GH 2-ONE HETNAM PO4 PHOSPHATE ION HETNAM K POTASSIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 1GH 2(C23 H21 N5 O3) FORMUL 4 PO4 O4 P 3- FORMUL 5 K 2(K 1+) FORMUL 6 CL CL 1- FORMUL 9 GOL C3 H8 O3 FORMUL 10 HOH *274(H2 O) HELIX 1 AA1 ASN A 11 ASP A 26 1 16 HELIX 2 AA2 ASP A 42 ILE A 47 1 6 HELIX 3 AA3 ASP A 52 GLY A 63 1 12 HELIX 4 AA4 THR A 67 ASN A 86 1 20 HELIX 5 AA5 SER A 90 GLY A 111 1 22 HELIX 6 AA6 ASN B 11 ASP B 26 1 16 HELIX 7 AA7 ASP B 42 ILE B 47 1 6 HELIX 8 AA8 ASP B 52 GLY B 63 1 12 HELIX 9 AA9 THR B 67 ASN B 86 1 20 HELIX 10 AB1 SER B 90 SER B 110 1 21 LINK O LEU A 83 K K A 203 1555 1555 2.69 LINK O GLU A 84 K K A 203 1555 1555 2.82 LINK O ASN A 86 K K A 203 1555 1555 2.59 LINK K K A 203 O HOH A 360 1555 1555 2.81 LINK K K A 203 O HOH A 420 1555 1555 2.95 LINK K K A 203 O HOH B 334 1555 3755 2.84 LINK O HOH A 341 K K B 202 2665 1555 2.87 LINK O LEU B 83 K K B 202 1555 1555 2.70 LINK O GLU B 84 K K B 202 1555 1555 2.93 LINK O ASN B 86 K K B 202 1555 1555 2.70 LINK K K B 202 O HOH B 348 1555 1555 2.85 LINK K K B 202 O HOH B 391 1555 1555 2.84 SITE 1 AC1 14 LEU A 28 GLY A 29 MET A 30 VAL A 35 SITE 2 AC1 14 GLU A 39 TYR A 85 ASN A 86 TRP A 92 SITE 3 AC1 14 ASP A 105 GLN A 109 HOH A 321 HOH A 348 SITE 4 AC1 14 HOH A 388 GLN B 94 SITE 1 AC2 8 TRP A 23 HIS A 32 HIS A 33 HOH A 352 SITE 2 AC2 8 HOH A 391 HOH A 432 HOH A 435 HOH B 397 SITE 1 AC3 6 LEU A 83 GLU A 84 ASN A 86 HOH A 360 SITE 2 AC3 6 HOH A 420 HOH B 334 SITE 1 AC4 2 LYS A 88 HOH A 380 SITE 1 AC5 15 LEU A 16 VAL A 19 SER A 20 TRP A 23 SITE 2 AC5 15 ARG A 57 HOH A 302 LEU B 28 GLY B 29 SITE 3 AC5 15 MET B 30 GLU B 39 LEU B 40 ASN B 86 SITE 4 AC5 15 TRP B 92 HOH B 365 HOH B 373 SITE 1 AC6 6 HOH A 341 LEU B 83 GLU B 84 ASN B 86 SITE 2 AC6 6 HOH B 348 HOH B 391 SITE 1 AC7 7 ASP A 24 LYS A 27 GLY B 29 HIS B 32 SITE 2 AC7 7 HIS B 33 HOH B 318 HOH B 390 CRYST1 55.869 62.091 62.117 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017899 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016099 0.00000