HEADER TRANSFERASE 15-MAY-14 4PL1 TITLE X-RAY CRYSTAL STRUCTURE OF C118A RLMN FROM ESCHERICHIA COLI WITH S- TITLE 2 ADENOSYLMETHIONINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL-SPECIFICITY RNA METHYLTRANSFERASE RLMN; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 17-375; COMPND 5 SYNONYM: 23S RRNA (ADENINE(2503)-C(2))-METHYLTRANSFERASE,23S RRNA COMPND 6 M2A2503 METHYLTRANSFERASE,RIBOSOMAL RNA LARGE SUBUNIT COMPND 7 METHYLTRANSFERASE N,TRNA (ADENINE(37)-C(2))-METHYLTRANSFERASE,TRNA COMPND 8 M2A37 METHYLTRANSFERASE; COMPND 9 EC: 2.1.1.192; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 536056; SOURCE 4 STRAIN: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1; SOURCE 5 GENE: RLMN, ECDH1_1151, ECDH1ME8569_2444; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS RADICAL SAM, S-ADENOSYLMETHIONINE, IRON-SULFUR CLUSTER, KEYWDS 2 METHYLTRANSFERASE, OXIDOREDUCTASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BOAL,A.C.ROSENZWEIG REVDAT 4 27-DEC-23 4PL1 1 SOURCE REMARK LINK REVDAT 3 25-FEB-15 4PL1 1 REMARK REVDAT 2 01-OCT-14 4PL1 1 JRNL REVDAT 1 28-MAY-14 4PL1 0 JRNL AUTH A.SILAKOV,T.L.GROVE,M.I.RADLE,M.R.BAUERLE,M.T.GREEN, JRNL AUTH 2 A.C.ROSENZWEIG,A.K.BOAL,S.J.BOOKER JRNL TITL CHARACTERIZATION OF A CROSS-LINKED PROTEIN-NUCLEIC ACID JRNL TITL 2 SUBSTRATE RADICAL IN THE REACTION CATALYZED BY RLMN. JRNL REF J.AM.CHEM.SOC. V. 136 8221 2014 JRNL REFN ESSN 1520-5126 JRNL PMID 24806349 JRNL DOI 10.1021/JA410560P REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 3 NUMBER OF REFLECTIONS : 24351 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.263 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1230 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 78.64 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 69 REMARK 3 BIN FREE R VALUE : 0.3810 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5453 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.67000 REMARK 3 B22 (A**2) : -1.72000 REMARK 3 B33 (A**2) : -0.95000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.633 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.392 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.340 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.628 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.888 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.858 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5627 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5478 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7621 ; 1.036 ; 1.980 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12578 ; 1.185 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 689 ; 5.002 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 261 ;34.445 ;23.946 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1013 ;12.105 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 50 ;10.213 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 860 ; 0.053 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6307 ; 0.002 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1261 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PL1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97857 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24546 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 200 DATA REDUNDANCY : 5.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, HEPES, MPD, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.81350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 127.01600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.86450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 127.01600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.81350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.86450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 349 REMARK 465 ASP A 350 REMARK 465 ILE A 351 REMARK 465 ASP A 352 REMARK 465 ALA A 353 REMARK 465 ALA A 354 REMARK 465 SMC A 355 REMARK 465 GLY A 356 REMARK 465 GLN A 357 REMARK 465 LEU A 358 REMARK 465 ALA A 359 REMARK 465 GLY A 360 REMARK 465 ASP A 361 REMARK 465 VAL A 362 REMARK 465 ILE A 363 REMARK 465 ASP A 364 REMARK 465 ARG A 365 REMARK 465 THR A 366 REMARK 465 LYS A 367 REMARK 465 ARG A 368 REMARK 465 THR A 369 REMARK 465 LEU A 370 REMARK 465 ARG A 371 REMARK 465 LYS A 372 REMARK 465 ARG A 373 REMARK 465 MET A 374 REMARK 465 GLN A 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN B 184 41.14 -147.91 REMARK 500 LEU B 234 -64.99 -92.38 REMARK 500 ASN B 286 25.07 -144.07 REMARK 500 PRO B 318 48.19 -91.61 REMARK 500 ASN A 184 52.21 -151.40 REMARK 500 HIS A 284 18.55 58.92 REMARK 500 ASN A 286 20.30 -146.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 402 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 125 SG REMARK 620 2 SF4 B 402 S1 116.6 REMARK 620 3 SF4 B 402 S2 119.7 98.6 REMARK 620 4 SF4 B 402 S4 120.0 97.5 99.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 402 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 129 SG REMARK 620 2 SF4 B 402 S2 128.9 REMARK 620 3 SF4 B 402 S3 111.1 98.9 REMARK 620 4 SF4 B 402 S4 114.5 99.6 99.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 402 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 132 SG REMARK 620 2 SF4 B 402 S1 123.0 REMARK 620 3 SF4 B 402 S3 113.2 99.7 REMARK 620 4 SF4 B 402 S4 119.8 97.8 99.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 402 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAM B 401 N REMARK 620 2 SF4 B 402 S1 105.0 REMARK 620 3 SF4 B 402 S2 77.9 97.9 REMARK 620 4 SF4 B 402 S3 156.4 98.7 99.1 REMARK 620 5 SAM B 401 OXT 65.2 157.2 99.7 92.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 402 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 125 SG REMARK 620 2 SF4 A 402 S2 127.4 REMARK 620 3 SF4 A 402 S3 114.0 99.2 REMARK 620 4 SF4 A 402 S4 113.8 98.8 99.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 402 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 129 SG REMARK 620 2 SF4 A 402 S1 112.6 REMARK 620 3 SF4 A 402 S3 129.6 99.7 REMARK 620 4 SF4 A 402 S4 111.7 99.1 99.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 402 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 132 SG REMARK 620 2 SF4 A 402 S1 121.4 REMARK 620 3 SF4 A 402 S2 123.4 99.3 REMARK 620 4 SF4 A 402 S4 110.7 98.7 98.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 402 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SAM A 401 N REMARK 620 2 SF4 A 402 S1 165.0 REMARK 620 3 SF4 A 402 S2 97.3 97.3 REMARK 620 4 SF4 A 402 S3 81.2 100.0 98.9 REMARK 620 5 SAM A 401 OXT 66.4 98.8 151.2 101.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SAM A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PL2 RELATED DB: PDB DBREF 4PL1 B 17 375 UNP C9QPQ6 C9QPQ6_ECOD1 17 375 DBREF 4PL1 A 17 375 UNP C9QPQ6 C9QPQ6_ECOD1 17 375 SEQADV 4PL1 ALA B 118 UNP C9QPQ6 CYS 118 ENGINEERED MUTATION SEQADV 4PL1 ALA A 118 UNP C9QPQ6 CYS 118 ENGINEERED MUTATION SEQRES 1 B 359 LYS ILE ASN LEU LEU ASP LEU ASN ARG GLN GLN MET ARG SEQRES 2 B 359 GLU PHE PHE LYS ASP LEU GLY GLU LYS PRO PHE ARG ALA SEQRES 3 B 359 ASP GLN VAL MET LYS TRP MET TYR HIS TYR CYS CYS ASP SEQRES 4 B 359 ASN PHE ASP GLU MET THR ASP ILE ASN LYS VAL LEU ARG SEQRES 5 B 359 GLY LYS LEU LYS GLU VAL ALA GLU ILE ARG ALA PRO GLU SEQRES 6 B 359 VAL VAL GLU GLU GLN ARG SER SER ASP GLY THR ILE LYS SEQRES 7 B 359 TRP ALA ILE ALA VAL GLY ASP GLN ARG VAL GLU THR VAL SEQRES 8 B 359 TYR ILE PRO GLU ASP ASP ARG ALA THR LEU ALA VAL SER SEQRES 9 B 359 SER GLN VAL GLY CYS ALA LEU GLU CYS LYS PHE CYS SER SEQRES 10 B 359 THR ALA GLN GLN GLY PHE ASN ARG ASN LEU ARG VAL SER SEQRES 11 B 359 GLU ILE ILE GLY GLN VAL TRP ARG ALA ALA LYS ILE VAL SEQRES 12 B 359 GLY ALA ALA LYS VAL THR GLY GLN ARG PRO ILE THR ASN SEQRES 13 B 359 VAL VAL MET MET GLY MET GLY GLU PRO LEU LEU ASN LEU SEQRES 14 B 359 ASN ASN VAL VAL PRO ALA MET GLU ILE MET LEU ASP ASP SEQRES 15 B 359 PHE GLY PHE GLY LEU SER LYS ARG ARG VAL THR LEU SER SEQRES 16 B 359 THR SER GLY VAL VAL PRO ALA LEU ASP LYS LEU GLY ASP SEQRES 17 B 359 MET ILE ASP VAL ALA LEU ALA ILE SER LEU HIS ALA PRO SEQRES 18 B 359 ASN ASP GLU ILE ARG ASP GLU ILE VAL PRO ILE ASN LYS SEQRES 19 B 359 LYS TYR ASN ILE GLU THR PHE LEU ALA ALA VAL ARG ARG SEQRES 20 B 359 TYR LEU GLU LYS SER ASN ALA ASN GLN GLY ARG VAL THR SEQRES 21 B 359 ILE GLU TYR VAL MET LEU ASP HIS VAL ASN ASP GLY THR SEQRES 22 B 359 GLU HIS ALA HIS GLN LEU ALA GLU LEU LEU LYS ASP THR SEQRES 23 B 359 PRO CYS LYS ILE ASN LEU ILE PRO TRP ASN PRO PHE PRO SEQRES 24 B 359 GLY ALA PRO TYR GLY ARG SER SER ASN SER ARG ILE ASP SEQRES 25 B 359 ARG PHE SER LYS VAL LEU MET SER TYR GLY PHE THR THR SEQRES 26 B 359 ILE VAL ARG LYS THR ARG GLY ASP ASP ILE ASP ALA ALA SEQRES 27 B 359 SMC GLY GLN LEU ALA GLY ASP VAL ILE ASP ARG THR LYS SEQRES 28 B 359 ARG THR LEU ARG LYS ARG MET GLN SEQRES 1 A 359 LYS ILE ASN LEU LEU ASP LEU ASN ARG GLN GLN MET ARG SEQRES 2 A 359 GLU PHE PHE LYS ASP LEU GLY GLU LYS PRO PHE ARG ALA SEQRES 3 A 359 ASP GLN VAL MET LYS TRP MET TYR HIS TYR CYS CYS ASP SEQRES 4 A 359 ASN PHE ASP GLU MET THR ASP ILE ASN LYS VAL LEU ARG SEQRES 5 A 359 GLY LYS LEU LYS GLU VAL ALA GLU ILE ARG ALA PRO GLU SEQRES 6 A 359 VAL VAL GLU GLU GLN ARG SER SER ASP GLY THR ILE LYS SEQRES 7 A 359 TRP ALA ILE ALA VAL GLY ASP GLN ARG VAL GLU THR VAL SEQRES 8 A 359 TYR ILE PRO GLU ASP ASP ARG ALA THR LEU ALA VAL SER SEQRES 9 A 359 SER GLN VAL GLY CYS ALA LEU GLU CYS LYS PHE CYS SER SEQRES 10 A 359 THR ALA GLN GLN GLY PHE ASN ARG ASN LEU ARG VAL SER SEQRES 11 A 359 GLU ILE ILE GLY GLN VAL TRP ARG ALA ALA LYS ILE VAL SEQRES 12 A 359 GLY ALA ALA LYS VAL THR GLY GLN ARG PRO ILE THR ASN SEQRES 13 A 359 VAL VAL MET MET GLY MET GLY GLU PRO LEU LEU ASN LEU SEQRES 14 A 359 ASN ASN VAL VAL PRO ALA MET GLU ILE MET LEU ASP ASP SEQRES 15 A 359 PHE GLY PHE GLY LEU SER LYS ARG ARG VAL THR LEU SER SEQRES 16 A 359 THR SER GLY VAL VAL PRO ALA LEU ASP LYS LEU GLY ASP SEQRES 17 A 359 MET ILE ASP VAL ALA LEU ALA ILE SER LEU HIS ALA PRO SEQRES 18 A 359 ASN ASP GLU ILE ARG ASP GLU ILE VAL PRO ILE ASN LYS SEQRES 19 A 359 LYS TYR ASN ILE GLU THR PHE LEU ALA ALA VAL ARG ARG SEQRES 20 A 359 TYR LEU GLU LYS SER ASN ALA ASN GLN GLY ARG VAL THR SEQRES 21 A 359 ILE GLU TYR VAL MET LEU ASP HIS VAL ASN ASP GLY THR SEQRES 22 A 359 GLU HIS ALA HIS GLN LEU ALA GLU LEU LEU LYS ASP THR SEQRES 23 A 359 PRO CYS LYS ILE ASN LEU ILE PRO TRP ASN PRO PHE PRO SEQRES 24 A 359 GLY ALA PRO TYR GLY ARG SER SER ASN SER ARG ILE ASP SEQRES 25 A 359 ARG PHE SER LYS VAL LEU MET SER TYR GLY PHE THR THR SEQRES 26 A 359 ILE VAL ARG LYS THR ARG GLY ASP ASP ILE ASP ALA ALA SEQRES 27 A 359 SMC GLY GLN LEU ALA GLY ASP VAL ILE ASP ARG THR LYS SEQRES 28 A 359 ARG THR LEU ARG LYS ARG MET GLN MODRES 4PL1 SMC B 355 CYS MODIFIED RESIDUE HET SMC B 355 7 HET SAM B 401 27 HET SF4 B 402 8 HET SAM A 401 27 HET SF4 A 402 8 HETNAM SMC S-METHYLCYSTEINE HETNAM SAM S-ADENOSYLMETHIONINE HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 1 SMC C4 H9 N O2 S FORMUL 3 SAM 2(C15 H22 N6 O5 S) FORMUL 4 SF4 2(FE4 S4) HELIX 1 AA1 LEU B 21 LEU B 23 5 3 HELIX 2 AA2 ASN B 24 LEU B 35 1 12 HELIX 3 AA3 PRO B 39 TYR B 52 1 14 HELIX 4 AA4 ASN B 56 MET B 60 5 5 HELIX 5 AA5 ASN B 64 VAL B 74 1 11 HELIX 6 AA6 ARG B 144 GLY B 160 1 17 HELIX 7 AA7 ALA B 161 GLY B 166 1 6 HELIX 8 AA8 GLU B 180 LEU B 183 5 4 HELIX 9 AA9 ASN B 184 ASP B 197 1 14 HELIX 10 AB1 SER B 204 ARG B 206 5 3 HELIX 11 AB2 VAL B 215 ILE B 226 1 12 HELIX 12 AB3 ASN B 238 VAL B 246 1 9 HELIX 13 AB4 PRO B 247 LYS B 251 5 5 HELIX 14 AB5 ASN B 253 GLU B 266 1 14 HELIX 15 AB6 GLY B 288 LEU B 299 1 12 HELIX 16 AB7 SER B 323 TYR B 337 1 15 HELIX 17 AB8 ILE B 363 MET B 374 1 12 HELIX 18 AB9 LEU A 21 LEU A 23 5 3 HELIX 19 AC1 ASN A 24 LEU A 35 1 12 HELIX 20 AC2 LYS A 38 TYR A 52 1 15 HELIX 21 AC3 ASN A 56 MET A 60 5 5 HELIX 22 AC4 ASN A 64 VAL A 74 1 11 HELIX 23 AC5 ARG A 144 GLY A 160 1 17 HELIX 24 AC6 ALA A 161 GLY A 166 1 6 HELIX 25 AC7 GLU A 180 LEU A 183 5 4 HELIX 26 AC8 ASN A 184 ASP A 197 1 14 HELIX 27 AC9 VAL A 215 ILE A 226 1 12 HELIX 28 AD1 ASN A 238 VAL A 246 1 9 HELIX 29 AD2 PRO A 247 TYR A 252 1 6 HELIX 30 AD3 ASN A 253 GLU A 266 1 14 HELIX 31 AD4 GLY A 288 LEU A 299 1 12 HELIX 32 AD5 SER A 323 GLY A 338 1 16 SHEET 1 AA1 2 ILE B 18 ASN B 19 0 SHEET 2 AA1 2 ALA B 75 GLU B 76 1 O GLU B 76 N ILE B 18 SHEET 1 AA210 VAL B 82 ARG B 87 0 SHEET 2 AA210 ILE B 93 VAL B 99 -1 O LYS B 94 N GLN B 86 SHEET 3 AA210 GLN B 102 PRO B 110 -1 O VAL B 104 N ILE B 97 SHEET 4 AA210 ALA B 115 VAL B 119 -1 O THR B 116 N ILE B 109 SHEET 5 AA210 ASN B 172 MET B 175 1 O VAL B 174 N LEU B 117 SHEET 6 AA210 VAL B 208 THR B 212 1 O THR B 209 N MET B 175 SHEET 7 AA210 ALA B 229 SER B 233 1 O ALA B 229 N LEU B 210 SHEET 8 AA210 VAL B 275 MET B 281 1 O GLU B 278 N ILE B 232 SHEET 9 AA210 CYS B 304 PRO B 310 1 O LYS B 305 N ILE B 277 SHEET 10 AA210 THR B 340 VAL B 343 1 O ILE B 342 N LEU B 308 SHEET 1 AA3 2 GLN B 122 VAL B 123 0 SHEET 2 AA3 2 ARG B 141 ASN B 142 -1 O ARG B 141 N VAL B 123 SHEET 1 AA4 2 ILE A 18 ASN A 19 0 SHEET 2 AA4 2 ALA A 75 GLU A 76 1 O GLU A 76 N ILE A 18 SHEET 1 AA510 GLU A 81 ARG A 87 0 SHEET 2 AA510 ILE A 93 VAL A 99 -1 O ALA A 98 N GLU A 81 SHEET 3 AA510 GLN A 102 PRO A 110 -1 O VAL A 104 N ILE A 97 SHEET 4 AA510 ALA A 115 VAL A 119 -1 O THR A 116 N ILE A 109 SHEET 5 AA510 ASN A 172 MET A 175 1 O VAL A 174 N LEU A 117 SHEET 6 AA510 VAL A 208 THR A 212 1 O THR A 209 N MET A 175 SHEET 7 AA510 ALA A 229 SER A 233 1 O SER A 233 N THR A 212 SHEET 8 AA510 VAL A 275 MET A 281 1 O THR A 276 N ILE A 232 SHEET 9 AA510 CYS A 304 PRO A 310 1 O ASN A 307 N ILE A 277 SHEET 10 AA510 THR A 340 VAL A 343 1 O THR A 340 N ILE A 306 SHEET 1 AA6 2 GLN A 122 VAL A 123 0 SHEET 2 AA6 2 ARG A 141 ASN A 142 -1 O ARG A 141 N VAL A 123 LINK C ALA B 354 N SMC B 355 1555 1555 1.33 LINK C SMC B 355 N GLY B 356 1555 1555 1.33 LINK SG CYS B 125 FE3 SF4 B 402 1555 1555 2.12 LINK SG CYS B 129 FE1 SF4 B 402 1555 1555 2.25 LINK SG CYS B 132 FE2 SF4 B 402 1555 1555 2.31 LINK N SAM B 401 FE4 SF4 B 402 1555 1555 2.55 LINK OXT SAM B 401 FE4 SF4 B 402 1555 1555 2.56 LINK SG CYS A 125 FE1 SF4 A 402 1555 1555 2.33 LINK SG CYS A 129 FE2 SF4 A 402 1555 1555 2.35 LINK SG CYS A 132 FE3 SF4 A 402 1555 1555 2.35 LINK N SAM A 401 FE4 SF4 A 402 1555 1555 2.61 LINK OXT SAM A 401 FE4 SF4 A 402 1555 1555 2.43 SITE 1 AC1 14 PHE B 131 MET B 175 MET B 176 GLY B 177 SITE 2 AC1 14 GLY B 179 GLU B 180 SER B 211 THR B 212 SITE 3 AC1 14 SER B 233 HIS B 235 TRP B 311 ASN B 312 SITE 4 AC1 14 SMC B 355 SF4 B 402 SITE 1 AC2 4 CYS B 125 CYS B 129 CYS B 132 SAM B 401 SITE 1 AC3 14 PHE A 131 CYS A 132 MET A 175 GLY A 177 SITE 2 AC3 14 GLY A 179 GLU A 180 SER A 211 THR A 212 SITE 3 AC3 14 SER A 233 HIS A 235 GLU A 278 TRP A 311 SITE 4 AC3 14 ASN A 312 SF4 A 402 SITE 1 AC4 7 CYS A 125 LEU A 127 CYS A 129 CYS A 132 SITE 2 AC4 7 GLY A 179 SER A 213 SAM A 401 CRYST1 55.627 55.729 254.032 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017944 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003937 0.00000