HEADER TRANSFERASE 16-MAY-14 4PL2 TITLE X-RAY CRYSTAL STRUCTURE OF C118A RLMN FROM ESCHERICHIA COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: DUAL-SPECIFICITY RNA METHYLTRANSFERASE RLMN; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: UNP RESIDUES 17-375; COMPND 5 SYNONYM: 23S RRNA (ADENINE(2503)-C(2))-METHYLTRANSFERASE,23S RRNA COMPND 6 M2A2503 METHYLTRANSFERASE,RIBOSOMAL RNA LARGE SUBUNIT COMPND 7 METHYLTRANSFERASE N,TRNA (ADENINE(37)-C(2))-METHYLTRANSFERASE,TRNA COMPND 8 M2A37 METHYLTRANSFERASE; COMPND 9 EC: 2.1.1.192; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 536056; SOURCE 4 STRAIN: ATCC 33849 / DSM 4235 / NCIB 12045 / K12 / DH1; SOURCE 5 GENE: RLMN, ECDH1_1151, ECDH1ME8569_2444; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS RADICAL SAM, S-ADENOSYLMETHIONINE, IRON-SULFUR CLUSTER, KEYWDS 2 METHYLTRANSFERASE, OXIDOREDUCTASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.K.BOAL,A.C.ROSENZWEIG REVDAT 5 27-DEC-23 4PL2 1 REMARK REVDAT 4 22-NOV-17 4PL2 1 SOURCE REMARK REVDAT 3 25-FEB-15 4PL2 1 REMARK REVDAT 2 01-OCT-14 4PL2 1 JRNL REVDAT 1 28-MAY-14 4PL2 0 JRNL AUTH A.SILAKOV,T.L.GROVE,M.I.RADLE,M.R.BAUERLE,M.T.GREEN, JRNL AUTH 2 A.C.ROSENZWEIG,A.K.BOAL,S.J.BOOKER JRNL TITL CHARACTERIZATION OF A CROSS-LINKED PROTEIN-NUCLEIC ACID JRNL TITL 2 SUBSTRATE RADICAL IN THE REACTION CATALYZED BY RLMN. JRNL REF J.AM.CHEM.SOC. V. 136 8221 2014 JRNL REFN ESSN 1520-5126 JRNL PMID 24806349 JRNL DOI 10.1021/JA410560P REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 40464 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2052 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2767 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.2470 REMARK 3 BIN FREE R VALUE SET COUNT : 161 REMARK 3 BIN FREE R VALUE : 0.2770 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5552 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 231 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : -0.17000 REMARK 3 B33 (A**2) : 0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.288 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.699 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5666 ; 0.005 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 5538 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7662 ; 0.980 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12708 ; 0.697 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 696 ; 5.765 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 268 ;34.009 ;23.806 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1044 ;12.964 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;14.251 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 866 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6354 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1280 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PL2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201600. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40701 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, HEPES, MPD, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.71900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 131.18850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.69200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 131.18850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.71900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.69200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 353 REMARK 465 ALA B 354 REMARK 465 CYS B 355 REMARK 465 GLY B 356 REMARK 465 GLN B 357 REMARK 465 LEU B 358 REMARK 465 ALA B 359 REMARK 465 GLY B 360 REMARK 465 GLN B 375 REMARK 465 ALA A 353 REMARK 465 ALA A 354 REMARK 465 CYS A 355 REMARK 465 GLY A 356 REMARK 465 GLN A 357 REMARK 465 LEU A 358 REMARK 465 ALA A 359 REMARK 465 GLY A 360 REMARK 465 GLN A 375 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET B 178 50.38 -140.85 REMARK 500 LEU B 234 -61.68 -91.00 REMARK 500 ASN B 286 14.49 -141.12 REMARK 500 LEU A 234 -63.35 -92.33 REMARK 500 ASN A 286 13.68 -141.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE3 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 125 SG REMARK 620 2 SF4 B 401 S1 112.3 REMARK 620 3 SF4 B 401 S2 115.5 104.5 REMARK 620 4 SF4 B 401 S4 112.1 105.4 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 129 SG REMARK 620 2 SF4 B 401 S2 120.4 REMARK 620 3 SF4 B 401 S3 109.7 103.1 REMARK 620 4 SF4 B 401 S4 109.5 105.2 108.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 B 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 132 SG REMARK 620 2 SF4 B 401 S1 115.7 REMARK 620 3 SF4 B 401 S3 110.3 105.8 REMARK 620 4 SF4 B 401 S4 114.5 103.5 106.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 125 SG REMARK 620 2 SF4 A 401 S2 115.3 REMARK 620 3 SF4 A 401 S3 113.0 105.2 REMARK 620 4 SF4 A 401 S4 112.5 103.4 106.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE4 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 129 SG REMARK 620 2 SF4 A 401 S1 110.3 REMARK 620 3 SF4 A 401 S2 121.5 103.9 REMARK 620 4 SF4 A 401 S3 108.4 107.0 104.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 SF4 A 401 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 132 SG REMARK 620 2 SF4 A 401 S1 110.3 REMARK 620 3 SF4 A 401 S3 112.9 107.5 REMARK 620 4 SF4 A 401 S4 117.1 104.8 103.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SF4 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4PL1 RELATED DB: PDB DBREF 4PL2 B 17 375 UNP C9QPQ6 C9QPQ6_ECOD1 17 375 DBREF 4PL2 A 17 375 UNP C9QPQ6 C9QPQ6_ECOD1 17 375 SEQADV 4PL2 ALA B 118 UNP C9QPQ6 CYS 118 ENGINEERED MUTATION SEQADV 4PL2 ALA A 118 UNP C9QPQ6 CYS 118 ENGINEERED MUTATION SEQRES 1 B 359 LYS ILE ASN LEU LEU ASP LEU ASN ARG GLN GLN MET ARG SEQRES 2 B 359 GLU PHE PHE LYS ASP LEU GLY GLU LYS PRO PHE ARG ALA SEQRES 3 B 359 ASP GLN VAL MET LYS TRP MET TYR HIS TYR CYS CYS ASP SEQRES 4 B 359 ASN PHE ASP GLU MET THR ASP ILE ASN LYS VAL LEU ARG SEQRES 5 B 359 GLY LYS LEU LYS GLU VAL ALA GLU ILE ARG ALA PRO GLU SEQRES 6 B 359 VAL VAL GLU GLU GLN ARG SER SER ASP GLY THR ILE LYS SEQRES 7 B 359 TRP ALA ILE ALA VAL GLY ASP GLN ARG VAL GLU THR VAL SEQRES 8 B 359 TYR ILE PRO GLU ASP ASP ARG ALA THR LEU ALA VAL SER SEQRES 9 B 359 SER GLN VAL GLY CYS ALA LEU GLU CYS LYS PHE CYS SER SEQRES 10 B 359 THR ALA GLN GLN GLY PHE ASN ARG ASN LEU ARG VAL SER SEQRES 11 B 359 GLU ILE ILE GLY GLN VAL TRP ARG ALA ALA LYS ILE VAL SEQRES 12 B 359 GLY ALA ALA LYS VAL THR GLY GLN ARG PRO ILE THR ASN SEQRES 13 B 359 VAL VAL MET MET GLY MET GLY GLU PRO LEU LEU ASN LEU SEQRES 14 B 359 ASN ASN VAL VAL PRO ALA MET GLU ILE MET LEU ASP ASP SEQRES 15 B 359 PHE GLY PHE GLY LEU SER LYS ARG ARG VAL THR LEU SER SEQRES 16 B 359 THR SER GLY VAL VAL PRO ALA LEU ASP LYS LEU GLY ASP SEQRES 17 B 359 MET ILE ASP VAL ALA LEU ALA ILE SER LEU HIS ALA PRO SEQRES 18 B 359 ASN ASP GLU ILE ARG ASP GLU ILE VAL PRO ILE ASN LYS SEQRES 19 B 359 LYS TYR ASN ILE GLU THR PHE LEU ALA ALA VAL ARG ARG SEQRES 20 B 359 TYR LEU GLU LYS SER ASN ALA ASN GLN GLY ARG VAL THR SEQRES 21 B 359 ILE GLU TYR VAL MET LEU ASP HIS VAL ASN ASP GLY THR SEQRES 22 B 359 GLU HIS ALA HIS GLN LEU ALA GLU LEU LEU LYS ASP THR SEQRES 23 B 359 PRO CYS LYS ILE ASN LEU ILE PRO TRP ASN PRO PHE PRO SEQRES 24 B 359 GLY ALA PRO TYR GLY ARG SER SER ASN SER ARG ILE ASP SEQRES 25 B 359 ARG PHE SER LYS VAL LEU MET SER TYR GLY PHE THR THR SEQRES 26 B 359 ILE VAL ARG LYS THR ARG GLY ASP ASP ILE ASP ALA ALA SEQRES 27 B 359 CYS GLY GLN LEU ALA GLY ASP VAL ILE ASP ARG THR LYS SEQRES 28 B 359 ARG THR LEU ARG LYS ARG MET GLN SEQRES 1 A 359 LYS ILE ASN LEU LEU ASP LEU ASN ARG GLN GLN MET ARG SEQRES 2 A 359 GLU PHE PHE LYS ASP LEU GLY GLU LYS PRO PHE ARG ALA SEQRES 3 A 359 ASP GLN VAL MET LYS TRP MET TYR HIS TYR CYS CYS ASP SEQRES 4 A 359 ASN PHE ASP GLU MET THR ASP ILE ASN LYS VAL LEU ARG SEQRES 5 A 359 GLY LYS LEU LYS GLU VAL ALA GLU ILE ARG ALA PRO GLU SEQRES 6 A 359 VAL VAL GLU GLU GLN ARG SER SER ASP GLY THR ILE LYS SEQRES 7 A 359 TRP ALA ILE ALA VAL GLY ASP GLN ARG VAL GLU THR VAL SEQRES 8 A 359 TYR ILE PRO GLU ASP ASP ARG ALA THR LEU ALA VAL SER SEQRES 9 A 359 SER GLN VAL GLY CYS ALA LEU GLU CYS LYS PHE CYS SER SEQRES 10 A 359 THR ALA GLN GLN GLY PHE ASN ARG ASN LEU ARG VAL SER SEQRES 11 A 359 GLU ILE ILE GLY GLN VAL TRP ARG ALA ALA LYS ILE VAL SEQRES 12 A 359 GLY ALA ALA LYS VAL THR GLY GLN ARG PRO ILE THR ASN SEQRES 13 A 359 VAL VAL MET MET GLY MET GLY GLU PRO LEU LEU ASN LEU SEQRES 14 A 359 ASN ASN VAL VAL PRO ALA MET GLU ILE MET LEU ASP ASP SEQRES 15 A 359 PHE GLY PHE GLY LEU SER LYS ARG ARG VAL THR LEU SER SEQRES 16 A 359 THR SER GLY VAL VAL PRO ALA LEU ASP LYS LEU GLY ASP SEQRES 17 A 359 MET ILE ASP VAL ALA LEU ALA ILE SER LEU HIS ALA PRO SEQRES 18 A 359 ASN ASP GLU ILE ARG ASP GLU ILE VAL PRO ILE ASN LYS SEQRES 19 A 359 LYS TYR ASN ILE GLU THR PHE LEU ALA ALA VAL ARG ARG SEQRES 20 A 359 TYR LEU GLU LYS SER ASN ALA ASN GLN GLY ARG VAL THR SEQRES 21 A 359 ILE GLU TYR VAL MET LEU ASP HIS VAL ASN ASP GLY THR SEQRES 22 A 359 GLU HIS ALA HIS GLN LEU ALA GLU LEU LEU LYS ASP THR SEQRES 23 A 359 PRO CYS LYS ILE ASN LEU ILE PRO TRP ASN PRO PHE PRO SEQRES 24 A 359 GLY ALA PRO TYR GLY ARG SER SER ASN SER ARG ILE ASP SEQRES 25 A 359 ARG PHE SER LYS VAL LEU MET SER TYR GLY PHE THR THR SEQRES 26 A 359 ILE VAL ARG LYS THR ARG GLY ASP ASP ILE ASP ALA ALA SEQRES 27 A 359 CYS GLY GLN LEU ALA GLY ASP VAL ILE ASP ARG THR LYS SEQRES 28 A 359 ARG THR LEU ARG LYS ARG MET GLN HET SF4 B 401 8 HET SF4 A 401 8 HETNAM SF4 IRON/SULFUR CLUSTER FORMUL 3 SF4 2(FE4 S4) FORMUL 5 HOH *231(H2 O) HELIX 1 AA1 LEU B 21 LEU B 23 5 3 HELIX 2 AA2 ASN B 24 LEU B 35 1 12 HELIX 3 AA3 LYS B 38 TYR B 52 1 15 HELIX 4 AA4 ASN B 56 MET B 60 5 5 HELIX 5 AA5 ASN B 64 VAL B 74 1 11 HELIX 6 AA6 CYS B 132 GLN B 137 1 6 HELIX 7 AA7 ARG B 144 GLY B 160 1 17 HELIX 8 AA8 ALA B 161 GLY B 166 1 6 HELIX 9 AA9 GLU B 180 LEU B 183 5 4 HELIX 10 AB1 ASN B 184 ASP B 197 1 14 HELIX 11 AB2 SER B 204 ARG B 206 5 3 HELIX 12 AB3 VAL B 215 ILE B 226 1 12 HELIX 13 AB4 ASN B 238 VAL B 246 1 9 HELIX 14 AB5 PRO B 247 LYS B 251 5 5 HELIX 15 AB6 ASN B 253 SER B 268 1 16 HELIX 16 AB7 GLY B 288 LEU B 299 1 12 HELIX 17 AB8 SER B 323 TYR B 337 1 15 HELIX 18 AB9 GLY B 348 ASP B 352 5 5 HELIX 19 AC1 ILE B 363 ARG B 373 1 11 HELIX 20 AC2 LEU A 21 LEU A 23 5 3 HELIX 21 AC3 ASN A 24 LEU A 35 1 12 HELIX 22 AC4 LYS A 38 TYR A 52 1 15 HELIX 23 AC5 ASN A 56 MET A 60 5 5 HELIX 24 AC6 ASN A 64 VAL A 74 1 11 HELIX 25 AC7 ARG A 144 GLY A 160 1 17 HELIX 26 AC8 ALA A 161 GLY A 166 1 6 HELIX 27 AC9 GLU A 180 LEU A 183 5 4 HELIX 28 AD1 ASN A 184 ASP A 197 1 14 HELIX 29 AD2 SER A 204 ARG A 206 5 3 HELIX 30 AD3 VAL A 215 ILE A 226 1 12 HELIX 31 AD4 ASN A 238 VAL A 246 1 9 HELIX 32 AD5 PRO A 247 LYS A 251 5 5 HELIX 33 AD6 ASN A 253 GLU A 266 1 14 HELIX 34 AD7 GLY A 288 LEU A 299 1 12 HELIX 35 AD8 SER A 323 TYR A 337 1 15 HELIX 36 AD9 ILE A 363 MET A 374 1 12 SHEET 1 AA1 2 ILE B 18 ASN B 19 0 SHEET 2 AA1 2 ALA B 75 GLU B 76 1 O GLU B 76 N ILE B 18 SHEET 1 AA210 GLU B 81 ARG B 87 0 SHEET 2 AA210 ILE B 93 VAL B 99 -1 O ALA B 96 N VAL B 83 SHEET 3 AA210 GLN B 102 PRO B 110 -1 O TYR B 108 N ILE B 93 SHEET 4 AA210 ALA B 115 VAL B 119 -1 O ALA B 118 N VAL B 107 SHEET 5 AA210 ASN B 172 MET B 175 1 O ASN B 172 N LEU B 117 SHEET 6 AA210 VAL B 208 THR B 212 1 O THR B 209 N VAL B 173 SHEET 7 AA210 ALA B 229 SER B 233 1 O ALA B 229 N LEU B 210 SHEET 8 AA210 VAL B 275 VAL B 280 1 O THR B 276 N ILE B 232 SHEET 9 AA210 CYS B 304 ILE B 309 1 O ASN B 307 N ILE B 277 SHEET 10 AA210 THR B 340 VAL B 343 1 O ILE B 342 N ILE B 306 SHEET 1 AA3 2 GLN B 122 GLY B 124 0 SHEET 2 AA3 2 PHE B 139 ASN B 142 -1 O ARG B 141 N VAL B 123 SHEET 1 AA4 2 ILE A 18 ASN A 19 0 SHEET 2 AA4 2 ALA A 75 GLU A 76 1 O GLU A 76 N ILE A 18 SHEET 1 AA510 GLU A 81 ARG A 87 0 SHEET 2 AA510 ILE A 93 VAL A 99 -1 O ALA A 98 N GLU A 81 SHEET 3 AA510 GLN A 102 PRO A 110 -1 O VAL A 104 N ILE A 97 SHEET 4 AA510 ALA A 115 VAL A 119 -1 O THR A 116 N ILE A 109 SHEET 5 AA510 ASN A 172 MET A 175 1 O VAL A 174 N LEU A 117 SHEET 6 AA510 VAL A 208 THR A 212 1 O THR A 209 N VAL A 173 SHEET 7 AA510 ALA A 229 SER A 233 1 O ALA A 229 N LEU A 210 SHEET 8 AA510 VAL A 275 VAL A 280 1 O GLU A 278 N ILE A 232 SHEET 9 AA510 CYS A 304 ILE A 309 1 O ASN A 307 N ILE A 277 SHEET 10 AA510 THR A 340 VAL A 343 1 O ILE A 342 N ILE A 306 SHEET 1 AA6 2 GLN A 122 GLY A 124 0 SHEET 2 AA6 2 PHE A 139 ASN A 142 -1 O ARG A 141 N VAL A 123 LINK SG CYS B 125 FE3 SF4 B 401 1555 1555 2.35 LINK SG CYS B 129 FE1 SF4 B 401 1555 1555 2.26 LINK SG CYS B 132 FE2 SF4 B 401 1555 1555 2.14 LINK SG CYS A 125 FE1 SF4 A 401 1555 1555 2.37 LINK SG CYS A 129 FE4 SF4 A 401 1555 1555 2.23 LINK SG CYS A 132 FE2 SF4 A 401 1555 1555 2.08 SITE 1 AC1 9 CYS B 125 LEU B 127 CYS B 129 CYS B 132 SITE 2 AC1 9 ALA B 135 GLY B 177 MET B 178 GLY B 179 SITE 3 AC1 9 SER B 213 SITE 1 AC2 8 CYS A 125 LEU A 127 CYS A 129 CYS A 132 SITE 2 AC2 8 ALA A 135 GLY A 177 MET A 178 GLY A 179 CRYST1 55.438 55.384 262.377 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018038 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018056 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003811 0.00000