HEADER OXIDOREDUCTASE 21-MAY-14 4PMJ TITLE CRYSTAL STRUCTURE OF A PUTATIVE OXIDOREDUCTASE FROM SINORHIZOBIUM TITLE 2 MELILOTI 1021 IN COMPLEX WITH NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE OXIDOREDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.1.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHIZOBIUM MELILOTI; SOURCE 3 ORGANISM_COMMON: ENSIFER MELILOTI; SOURCE 4 ORGANISM_TAXID: 266834; SOURCE 5 STRAIN: 1021; SOURCE 6 GENE: R02112, SMC01429; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 2 RESEARCH CONSORTIUM, NYSGRC, PUTATIVE OXIDOREDUCTASE, NADP, LIMITED KEYWDS 3 PROTEOLYSIS., OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR O.A.GASIOROWSKA,I.G.SHABALIN,K.B.HANDING,K.SZLACHTA,M.D.ZIMMERMAN, AUTHOR 2 B.S.HILLERICH,A.GIZZI,R.TORO,J.BONANNO,R.SEIDEL,S.C.ALMO,W.MINOR,NEW AUTHOR 3 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 6 27-DEC-23 4PMJ 1 REMARK REVDAT 5 13-APR-22 4PMJ 1 AUTHOR JRNL REMARK REVDAT 4 25-DEC-19 4PMJ 1 REMARK REVDAT 3 20-SEP-17 4PMJ 1 REMARK REVDAT 2 26-AUG-15 4PMJ 1 REMARK REVDAT 1 11-JUN-14 4PMJ 0 JRNL AUTH O.A.GASIOROWSKA,I.G.SHABALIN,K.B.HANDING,K.SZLACHTA, JRNL AUTH 2 M.D.ZIMMERMAN,B.S.HILLERICH,A.GIZZI,R.TORO,J.BONANNO, JRNL AUTH 3 R.SEIDEL,S.C.ALMO,W.MINOR JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE OXIDOREDUCTASE FROM JRNL TITL 2 SINORHIZOBIUMMELILOTI 1021 IN COMPLEX WITH NADP JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0049 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 13677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 731 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 854 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 85.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 41 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2127 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 115 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 1.00000 REMARK 3 B33 (A**2) : -1.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.271 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.201 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.162 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 12.060 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2233 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2128 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3041 ; 1.662 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4877 ; 0.947 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 282 ; 5.768 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 96 ;36.145 ;22.917 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 337 ;14.328 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;12.063 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 343 ; 0.090 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2524 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 502 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1125 ; 0.749 ; 1.170 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1124 ; 0.745 ; 1.169 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1405 ; 1.257 ; 1.752 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1406 ; 1.258 ; 1.753 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1108 ; 1.304 ; 1.390 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1108 ; 1.301 ; 1.390 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 1636 ; 2.005 ; 2.023 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 2562 ; 5.720 ;10.397 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 2563 ; 5.719 ;10.412 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 15 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0720 8.8710 4.8970 REMARK 3 T TENSOR REMARK 3 T11: 0.1226 T22: 0.1695 REMARK 3 T33: 0.2894 T12: 0.0085 REMARK 3 T13: 0.0981 T23: -0.0462 REMARK 3 L TENSOR REMARK 3 L11: 12.8297 L22: 2.7566 REMARK 3 L33: 15.0278 L12: 5.8608 REMARK 3 L13: 8.8986 L23: 4.6273 REMARK 3 S TENSOR REMARK 3 S11: -0.2961 S12: 0.2092 S13: 0.8333 REMARK 3 S21: -0.1481 S22: 0.0712 S23: 0.4564 REMARK 3 S31: -1.0000 S32: 0.2079 S33: 0.2249 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 37 REMARK 3 ORIGIN FOR THE GROUP (A): -3.6010 -7.0910 16.0020 REMARK 3 T TENSOR REMARK 3 T11: 0.0253 T22: 0.2772 REMARK 3 T33: 0.1447 T12: 0.0122 REMARK 3 T13: 0.0015 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 2.0874 L22: 4.9306 REMARK 3 L33: 5.0754 L12: -0.7099 REMARK 3 L13: 0.3688 L23: -1.9774 REMARK 3 S TENSOR REMARK 3 S11: 0.0410 S12: -0.0753 S13: -0.1143 REMARK 3 S21: 0.0482 S22: -0.1400 S23: -0.1517 REMARK 3 S31: 0.3000 S32: 0.3216 S33: 0.0991 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 38 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2120 -2.2290 15.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.0092 T22: 0.2767 REMARK 3 T33: 0.1522 T12: -0.0104 REMARK 3 T13: 0.0110 T23: -0.0156 REMARK 3 L TENSOR REMARK 3 L11: 3.8782 L22: 1.9508 REMARK 3 L33: 4.7349 L12: 1.3228 REMARK 3 L13: 1.9946 L23: 3.0372 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: -0.1549 S13: -0.0456 REMARK 3 S21: 0.0912 S22: -0.0240 S23: -0.0214 REMARK 3 S31: 0.1435 S32: -0.0269 S33: -0.0067 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 74 REMARK 3 ORIGIN FOR THE GROUP (A): -12.6230 -8.8720 17.2340 REMARK 3 T TENSOR REMARK 3 T11: 0.2689 T22: 0.4594 REMARK 3 T33: 0.2243 T12: -0.0852 REMARK 3 T13: 0.0000 T23: -0.0388 REMARK 3 L TENSOR REMARK 3 L11: 4.0791 L22: 4.0803 REMARK 3 L33: 5.1164 L12: -1.4199 REMARK 3 L13: -0.3419 L23: -1.1332 REMARK 3 S TENSOR REMARK 3 S11: 0.0108 S12: -0.6165 S13: -0.0968 REMARK 3 S21: 0.7674 S22: -0.0388 S23: 0.0689 REMARK 3 S31: 0.4179 S32: -0.1686 S33: 0.0281 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 75 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3560 -13.3310 4.2930 REMARK 3 T TENSOR REMARK 3 T11: 0.0075 T22: 0.2757 REMARK 3 T33: 0.1419 T12: -0.0046 REMARK 3 T13: 0.0129 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.1343 L22: 4.3591 REMARK 3 L33: 1.7567 L12: -0.1255 REMARK 3 L13: -0.2595 L23: 1.7237 REMARK 3 S TENSOR REMARK 3 S11: -0.0666 S12: -0.1401 S13: -0.1031 REMARK 3 S21: 0.0559 S22: 0.1217 S23: -0.0830 REMARK 3 S31: 0.0879 S32: -0.0143 S33: -0.0551 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 132 REMARK 3 ORIGIN FOR THE GROUP (A): -17.5290 -13.5950 2.1000 REMARK 3 T TENSOR REMARK 3 T11: 0.0063 T22: 0.2649 REMARK 3 T33: 0.1828 T12: -0.0010 REMARK 3 T13: -0.0004 T23: 0.0079 REMARK 3 L TENSOR REMARK 3 L11: 2.2024 L22: 0.5822 REMARK 3 L33: 2.5439 L12: 0.1486 REMARK 3 L13: -0.0367 L23: 0.4818 REMARK 3 S TENSOR REMARK 3 S11: -0.0628 S12: 0.0317 S13: -0.1693 REMARK 3 S21: -0.0268 S22: 0.0451 S23: 0.1136 REMARK 3 S31: 0.0670 S32: -0.0512 S33: 0.0177 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 133 A 183 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4870 -5.6540 -5.7910 REMARK 3 T TENSOR REMARK 3 T11: 0.0082 T22: 0.2599 REMARK 3 T33: 0.1166 T12: 0.0024 REMARK 3 T13: 0.0023 T23: 0.0123 REMARK 3 L TENSOR REMARK 3 L11: 3.3243 L22: 1.0195 REMARK 3 L33: 1.2682 L12: 0.7915 REMARK 3 L13: -0.4689 L23: -0.2170 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: 0.1778 S13: 0.0803 REMARK 3 S21: -0.0875 S22: 0.0712 S23: -0.0010 REMARK 3 S31: 0.0297 S32: -0.0196 S33: -0.0339 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 184 A 203 REMARK 3 ORIGIN FOR THE GROUP (A): -1.6160 -1.7450 -1.5090 REMARK 3 T TENSOR REMARK 3 T11: 0.0094 T22: 0.2503 REMARK 3 T33: 0.1506 T12: 0.0255 REMARK 3 T13: 0.0125 T23: -0.0203 REMARK 3 L TENSOR REMARK 3 L11: 5.9099 L22: 2.4200 REMARK 3 L33: 3.7774 L12: -2.6577 REMARK 3 L13: 3.5173 L23: -2.7528 REMARK 3 S TENSOR REMARK 3 S11: 0.1827 S12: 0.1923 S13: 0.1076 REMARK 3 S21: -0.0900 S22: -0.1870 S23: -0.0369 REMARK 3 S31: 0.1394 S32: 0.2110 S33: 0.0043 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 204 A 273 REMARK 3 ORIGIN FOR THE GROUP (A): 7.1440 6.1950 6.2440 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.3192 REMARK 3 T33: 0.2728 T12: -0.0237 REMARK 3 T13: 0.0160 T23: -0.0174 REMARK 3 L TENSOR REMARK 3 L11: 2.4459 L22: 1.2808 REMARK 3 L33: 1.8522 L12: 0.7257 REMARK 3 L13: -0.6965 L23: 0.5840 REMARK 3 S TENSOR REMARK 3 S11: 0.1489 S12: -0.1350 S13: 0.2655 REMARK 3 S21: 0.0195 S22: -0.0084 S23: -0.1717 REMARK 3 S31: -0.2316 S32: 0.2481 S33: -0.1405 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 274 A 281 REMARK 3 ORIGIN FOR THE GROUP (A): 4.0830 -9.3860 -9.1600 REMARK 3 T TENSOR REMARK 3 T11: 0.1096 T22: 0.2341 REMARK 3 T33: 0.1237 T12: -0.0379 REMARK 3 T13: 0.0666 T23: 0.0075 REMARK 3 L TENSOR REMARK 3 L11: 2.8829 L22: 9.9998 REMARK 3 L33: 26.3777 L12: 2.9836 REMARK 3 L13: -5.5507 L23: -11.5249 REMARK 3 S TENSOR REMARK 3 S11: -0.5258 S12: 0.1417 S13: -0.3171 REMARK 3 S21: -0.5007 S22: -0.0513 S23: -0.6557 REMARK 3 S31: 0.5946 S32: 0.2408 S33: 0.5771 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4PMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-14. REMARK 100 THE DEPOSITION ID IS D_1000201652. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14450 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.13600 REMARK 200 R SYM (I) : 0.13600 REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 85.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.45700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXDE, MLPHARE, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 UL OF 14 MG/ML PROTEIN IN 20 MM REMARK 280 HEPES PH 7.5, 150 MM NACL, 10% GLYCEROL, 0.1% SODIUM AZIDE AND REMARK 280 0.5 MM TCEP WERE MIXED WITH 0.2 UL OF THE MCSG-II CONDITION #42 REMARK 280 (1.1 M AMMONIUM TARTRATE DIBASIC PH 7.0) AND EQUILIBRATED REMARK 280 AGAINST 1.5 M NACL SOLUTION IN 96 WELL 3 DROP CRYSTALLIZATION REMARK 280 PLATE (SWISSCI). BEFORE CRYSTALLIZATION PROTEIN WAS INCUBATED REMARK 280 WITH 1/50 V/V OF 2 MG/ML CHYMOTRYPSIN SOLUTION AT 289 K FOR 3 REMARK 280 HOURS., VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 22.16200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.78150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.44850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 39.78150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 22.16200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.44850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MSE A 1 CG SE CE REMARK 470 ARG A 30 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 71 CE NZ REMARK 470 ASP A 75 CG OD1 OD2 REMARK 470 LYS A 214 CD CE NZ REMARK 470 GLU A 244 CG CD OE1 OE2 REMARK 470 GLU A 260 CD OE1 OE2 REMARK 470 ARG A 273 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 23 -0.15 -144.49 REMARK 500 ARG A 25 -1.89 81.74 REMARK 500 ARG A 73 30.69 -162.31 REMARK 500 ALA A 88 32.65 -90.41 REMARK 500 ASP A 159 -1.17 80.85 REMARK 500 ASP A 180 -53.22 -140.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-012048 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PROTEIN WAS EXPRESSED WITH HIS TAG AND SUBJECTED TO LIMITED REMARK 999 PROTEOLYSIS BY CHYMOTRYPSIN DBREF 4PMJ A 1 281 UNP Q92NR7 Q92NR7_RHIME 1 281 SEQRES 1 A 281 MSE HIS ASP PRO ILE PRO THR ILE ALA PHE PRO ASP GLY SEQRES 2 A 281 ARG LYS VAL PRO ALA LEU GLY GLN GLY THR TRP ARG MSE SEQRES 3 A 281 GLY GLU ASN ARG ALA LYS THR ALA ASP GLU VAL ARG SER SEQRES 4 A 281 LEU GLN THR GLY LEU ASP LEU GLY MSE THR LEU ILE ASP SEQRES 5 A 281 THR ALA GLU MSE TYR GLY ASP GLY ALA ALA GLU ARG ILE SEQRES 6 A 281 VAL GLY GLU ALA ILE LYS GLY ARG ARG ASP GLU ALA PHE SEQRES 7 A 281 VAL VAL SER LYS VAL LEU PRO SER ASN ALA SER ARG ALA SEQRES 8 A 281 GLY THR VAL ALA ALA CYS GLU ARG SER LEU ARG ASN LEU SEQRES 9 A 281 GLY ILE ASP CYS VAL ASP LEU TYR LEU LEU HIS TRP ARG SEQRES 10 A 281 GLY GLY TYR PRO LEU ALA GLU THR VAL ALA ALA PHE GLU SEQRES 11 A 281 GLU LEU LYS LYS ALA GLY LYS ILE ARG ALA TRP GLY VAL SEQRES 12 A 281 SER ASN PHE ASP VAL ASP ASP MSE GLU GLU LEU SER ALA SEQRES 13 A 281 VAL PRO ASP GLY GLY ASN VAL ALA ALA ASN GLN VAL LEU SEQRES 14 A 281 TYR ASN LEU ALA ARG ARG GLY ILE GLU PHE ASP LEU LEU SEQRES 15 A 281 PRO ARG CYS ARG ALA GLN GLY VAL PRO VAL MSE ALA TYR SEQRES 16 A 281 SER PRO LEU ASP GLU GLY ARG LEU LEU HIS ASP ALA ASP SEQRES 17 A 281 LEU ILE HIS ILE ALA LYS ALA HIS GLN ALA THR PRO ALA SEQRES 18 A 281 GLN VAL ALA LEU ALA PHE LEU LYS THR CYS SER GLY VAL SEQRES 19 A 281 ILE SER ILE PRO LYS THR GLY SER PRO GLU ARG ALA ARG SEQRES 20 A 281 GLU ASN ARG ASP ALA MSE ASP ILE HIS LEU THR THR GLU SEQRES 21 A 281 ASN LEU ALA GLU LEU ASP ARG HIS PHE PRO PRO PRO ARG SEQRES 22 A 281 ARG LYS THR ARG LEU GLU VAL ILE MODRES 4PMJ MSE A 1 MET MODIFIED RESIDUE MODRES 4PMJ MSE A 26 MET MODIFIED RESIDUE MODRES 4PMJ MSE A 48 MET MODIFIED RESIDUE MODRES 4PMJ MSE A 56 MET MODIFIED RESIDUE MODRES 4PMJ MSE A 151 MET MODIFIED RESIDUE MODRES 4PMJ MSE A 193 MET MODIFIED RESIDUE MODRES 4PMJ MSE A 253 MET MODIFIED RESIDUE HET MSE A 1 5 HET MSE A 26 8 HET MSE A 48 8 HET MSE A 56 8 HET MSE A 151 8 HET MSE A 193 8 HET MSE A 253 8 HET NAP A 301 48 HET GOL A 302 6 HETNAM MSE SELENOMETHIONINE HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM GOL GLYCEROL HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 NAP C21 H28 N7 O17 P3 FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *115(H2 O) HELIX 1 AA1 LYS A 32 LEU A 46 1 15 HELIX 2 AA2 MSE A 56 ASP A 59 5 4 HELIX 3 AA3 GLY A 60 ILE A 70 1 11 HELIX 4 AA4 ARG A 73 ALA A 77 5 5 HELIX 5 AA5 LEU A 84 ALA A 88 5 5 HELIX 6 AA6 SER A 89 GLY A 105 1 17 HELIX 7 AA7 PRO A 121 ALA A 135 1 15 HELIX 8 AA8 ASP A 147 SER A 155 1 9 HELIX 9 AA9 ASP A 159 VAL A 163 5 5 HELIX 10 AB1 ARG A 175 PHE A 179 5 5 HELIX 11 AB2 ASP A 180 GLY A 189 1 10 HELIX 12 AB3 LEU A 198 HIS A 205 5 8 HELIX 13 AB4 ASP A 206 HIS A 216 1 11 HELIX 14 AB5 THR A 219 THR A 230 1 12 HELIX 15 AB6 SER A 242 ALA A 252 1 11 HELIX 16 AB7 MSE A 253 ILE A 255 5 3 HELIX 17 AB8 THR A 258 PHE A 269 1 12 SHEET 1 AA1 2 THR A 7 ALA A 9 0 SHEET 2 AA1 2 LYS A 15 PRO A 17 -1 O VAL A 16 N ILE A 8 SHEET 1 AA2 7 LEU A 50 ASP A 52 0 SHEET 2 AA2 7 PHE A 78 VAL A 83 1 O VAL A 80 N ILE A 51 SHEET 3 AA2 7 LEU A 111 LEU A 114 1 O LEU A 113 N VAL A 83 SHEET 4 AA2 7 TRP A 141 SER A 144 1 O GLY A 142 N TYR A 112 SHEET 5 AA2 7 ASN A 166 LEU A 169 1 O GLN A 167 N VAL A 143 SHEET 6 AA2 7 VAL A 192 TYR A 195 1 O TYR A 195 N VAL A 168 SHEET 7 AA2 7 VAL A 234 SER A 236 1 O ILE A 235 N ALA A 194 LINK C MSE A 1 N HIS A 2 1555 1555 1.33 LINK C ARG A 25 N MSE A 26 1555 1555 1.34 LINK C MSE A 26 N GLY A 27 1555 1555 1.33 LINK C GLY A 47 N MSE A 48 1555 1555 1.33 LINK C MSE A 48 N THR A 49 1555 1555 1.32 LINK C GLU A 55 N MSE A 56 1555 1555 1.31 LINK C MSE A 56 N TYR A 57 1555 1555 1.33 LINK C ASP A 150 N MSE A 151 1555 1555 1.35 LINK C MSE A 151 N GLU A 152 1555 1555 1.33 LINK C VAL A 192 N MSE A 193 1555 1555 1.34 LINK C MSE A 193 N ALA A 194 1555 1555 1.32 LINK C ALA A 252 N MSE A 253 1555 1555 1.33 LINK C MSE A 253 N ASP A 254 1555 1555 1.33 SITE 1 AC1 30 GLY A 22 THR A 23 TRP A 24 ASP A 52 SITE 2 AC1 30 TYR A 57 HIS A 115 SER A 144 ASN A 145 SITE 3 AC1 30 GLN A 167 TYR A 195 SER A 196 PRO A 197 SITE 4 AC1 30 LEU A 198 ASP A 199 GLU A 200 LEU A 204 SITE 5 AC1 30 ALA A 221 ILE A 237 PRO A 238 LYS A 239 SITE 6 AC1 30 THR A 240 GLY A 241 ARG A 245 GLU A 248 SITE 7 AC1 30 ASN A 249 ILE A 281 HOH A 456 HOH A 474 SITE 8 AC1 30 HOH A 479 HOH A 507 SITE 1 AC2 6 PRO A 85 VAL A 94 TRP A 116 GLU A 131 SITE 2 AC2 6 LYS A 137 HOH A 422 CRYST1 44.324 78.897 79.563 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012675 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012569 0.00000 HETATM 1 N MSE A 1 -1.219 19.180 18.943 1.00 79.55 N ANISOU 1 N MSE A 1 10534 10032 9661 -3405 1391 -3667 N HETATM 2 CA MSE A 1 -2.327 18.879 17.992 1.00 78.37 C ANISOU 2 CA MSE A 1 10437 9432 9908 -2866 1237 -3549 C HETATM 3 C MSE A 1 -1.742 18.265 16.746 1.00 74.77 C ANISOU 3 C MSE A 1 10060 9072 9277 -3068 1214 -2820 C HETATM 4 O MSE A 1 -0.978 18.906 16.030 1.00 76.22 O ANISOU 4 O MSE A 1 10620 8996 9345 -3565 965 -2494 O HETATM 5 CB MSE A 1 -3.128 20.135 17.654 1.00 84.58 C ANISOU 5 CB MSE A 1 11695 9168 11271 -2570 715 -3964 C