data_4PNB # _entry.id 4PNB # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.318 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4PNB WWPDB D_1000201740 # _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.entry_id 4PNB _pdbx_database_status.recvd_initial_deposition_date 2014-05-23 _pdbx_database_status.SG_entry N _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBE _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Wood, C.W.' 1 ? 'Burton, A.J.' 2 ? 'Thomson, A.R.' 3 ? 'Brady, R.L.' 4 ? 'Woolfson, D.N.' 5 ? # _citation.abstract ? _citation.abstract_id_CAS ? _citation.book_id_ISBN ? _citation.book_publisher ? _citation.book_publisher_city ? _citation.book_title ? _citation.coordinate_linkage ? _citation.country US _citation.database_id_Medline ? _citation.details ? _citation.id primary _citation.journal_abbrev Science _citation.journal_id_ASTM SCIEAS _citation.journal_id_CSD 0038 _citation.journal_id_ISSN 1095-9203 _citation.journal_full ? _citation.journal_issue ? _citation.journal_volume 346 _citation.language ? _citation.page_first 485 _citation.page_last 488 _citation.title 'Computational design of water-soluble alpha-helical barrels.' _citation.year 2014 _citation.database_id_CSD ? _citation.pdbx_database_id_DOI 10.1126/science.1257452 _citation.pdbx_database_id_PubMed 25342807 _citation.unpublished_flag ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Thomson, A.R.' 1 ? primary 'Wood, C.W.' 2 ? primary 'Burton, A.J.' 3 ? primary 'Bartlett, G.J.' 4 ? primary 'Sessions, R.B.' 5 ? primary 'Brady, R.L.' 6 ? primary 'Woolfson, D.N.' 7 ? # _cell.entry_id 4PNB _cell.length_a 89.210 _cell.length_b 89.210 _cell.length_c 89.210 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 96 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4PNB _symmetry.cell_setting ? _symmetry.Int_Tables_number 199 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 21 3' _symmetry.pdbx_full_space_group_name_H-M ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn CC-Hex3 3300.863 4 ? ? ? ? 2 water nat water 18.015 74 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)GEIAQSIKEIAKSIKEIAWSIKEIAQSIKG' _entity_poly.pdbx_seq_one_letter_code_can XGEIAQSIKEIAKSIKEIAWSIKEIAQSIKG _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 GLY n 1 3 GLU n 1 4 ILE n 1 5 ALA n 1 6 GLN n 1 7 SER n 1 8 ILE n 1 9 LYS n 1 10 GLU n 1 11 ILE n 1 12 ALA n 1 13 LYS n 1 14 SER n 1 15 ILE n 1 16 LYS n 1 17 GLU n 1 18 ILE n 1 19 ALA n 1 20 TRP n 1 21 SER n 1 22 ILE n 1 23 LYS n 1 24 GLU n 1 25 ILE n 1 26 ALA n 1 27 GLN n 1 28 SER n 1 29 ILE n 1 30 LYS n 1 31 GLY n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num 1 _pdbx_entity_src_syn.pdbx_end_seq_num 31 _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32360 _pdbx_entity_src_syn.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4PNB _struct_ref.pdbx_db_accession 4PNB _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4PNB A 1 ? 31 ? 4PNB 0 ? 30 ? 0 30 2 1 4PNB B 1 ? 31 ? 4PNB 0 ? 30 ? 0 30 3 1 4PNB C 1 ? 31 ? 4PNB 0 ? 30 ? 0 30 4 1 4PNB D 1 ? 31 ? 4PNB 0 ? 30 ? 0 30 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.entry_id 4PNB _exptl.crystals_number ? _exptl.details ? _exptl.method 'X-RAY DIFFRACTION' _exptl.method_details ? # _exptl_crystal.colour ? _exptl_crystal.density_diffrn ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_method ? _exptl_crystal.density_percent_sol 45.34 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.id 1 _exptl_crystal.preparation ? _exptl_crystal.size_max ? _exptl_crystal.size_mid ? _exptl_crystal.size_min ? _exptl_crystal.size_rad ? _exptl_crystal.colour_lustre ? _exptl_crystal.colour_modifier ? _exptl_crystal.colour_primary ? _exptl_crystal.density_meas ? _exptl_crystal.density_meas_esd ? _exptl_crystal.density_meas_gt ? _exptl_crystal.density_meas_lt ? _exptl_crystal.density_meas_temp ? _exptl_crystal.density_meas_temp_esd ? _exptl_crystal.density_meas_temp_gt ? _exptl_crystal.density_meas_temp_lt ? _exptl_crystal.pdbx_crystal_image_url ? _exptl_crystal.pdbx_crystal_image_format ? _exptl_crystal.pdbx_mosaicity ? _exptl_crystal.pdbx_mosaicity_esd ? # _exptl_crystal_grow.apparatus ? _exptl_crystal_grow.atmosphere ? _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.details ? _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.method_ref ? _exptl_crystal_grow.pH 5.5 _exptl_crystal_grow.pressure ? _exptl_crystal_grow.pressure_esd ? _exptl_crystal_grow.seeding ? _exptl_crystal_grow.seeding_ref ? _exptl_crystal_grow.temp 292 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.temp_esd ? _exptl_crystal_grow.time ? _exptl_crystal_grow.pdbx_details '0.2 M ammonium sulfate, 0.1 M sodium acetate, 10 % w/v PEG 2000 MME.' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.ambient_environment ? _diffrn.ambient_temp 90 _diffrn.ambient_temp_details ? _diffrn.ambient_temp_esd ? _diffrn.crystal_id 1 _diffrn.crystal_support ? _diffrn.crystal_treatment ? _diffrn.details ? _diffrn.id 1 _diffrn.ambient_pressure ? _diffrn.ambient_pressure_esd ? _diffrn.ambient_pressure_gt ? _diffrn.ambient_pressure_lt ? _diffrn.ambient_temp_gt ? _diffrn.ambient_temp_lt ? _diffrn.pdbx_serial_crystal_experiment ? # _diffrn_detector.details ? _diffrn_detector.detector PIXEL _diffrn_detector.diffrn_id 1 _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.area_resol_mean ? _diffrn_detector.dtime ? _diffrn_detector.pdbx_frames_total ? _diffrn_detector.pdbx_collection_time_total ? _diffrn_detector.pdbx_collection_date 2014-02-09 # _diffrn_radiation.collimation ? _diffrn_radiation.diffrn_id 1 _diffrn_radiation.filter_edge ? _diffrn_radiation.inhomogeneity ? _diffrn_radiation.monochromator ? _diffrn_radiation.polarisn_norm ? _diffrn_radiation.polarisn_ratio ? _diffrn_radiation.probe ? _diffrn_radiation.type ? _diffrn_radiation.xray_symbol ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_wavelength_list ? _diffrn_radiation.pdbx_wavelength ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_analyzer ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.current ? _diffrn_source.details ? _diffrn_source.diffrn_id 1 _diffrn_source.power ? _diffrn_source.size ? _diffrn_source.source SYNCHROTRON _diffrn_source.target ? _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.voltage ? _diffrn_source.take-off_angle ? _diffrn_source.pdbx_wavelength_list 0.98 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_synchrotron_site Diamond # _reflns.B_iso_Wilson_estimate ? _reflns.entry_id 4PNB _reflns.data_reduction_details ? _reflns.data_reduction_method ? _reflns.d_resolution_high 2.05 _reflns.d_resolution_low 44.61 _reflns.details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.number_all ? _reflns.number_obs 7572 _reflns.observed_criterion ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.observed_criterion_I_max ? _reflns.observed_criterion_I_min ? _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.percent_possible_obs 100 _reflns.R_free_details ? _reflns.Rmerge_F_all ? _reflns.Rmerge_F_obs ? _reflns.Friedel_coverage ? _reflns.number_gt ? _reflns.threshold_expression ? _reflns.pdbx_redundancy 13.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rmerge_I_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI ? _reflns.pdbx_netI_over_sigmaI 14.5 _reflns.pdbx_res_netI_over_av_sigmaI_2 ? _reflns.pdbx_res_netI_over_sigmaI_2 ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_d_res_high_opt ? _reflns.pdbx_d_res_low_opt ? _reflns.pdbx_d_res_opt_method ? _reflns.phase_calculation_details ? _reflns.pdbx_Rrim_I_all ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_d_opt ? _reflns.pdbx_number_measured_all ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_CC_half ? _reflns.pdbx_R_split ? # _reflns_shell.d_res_high 2.05 _reflns_shell.d_res_low 2.11 _reflns_shell.meanI_over_sigI_all ? _reflns_shell.meanI_over_sigI_obs 3.9 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_possible ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.percent_possible_obs ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.Rmerge_I_obs 0.701 _reflns_shell.meanI_over_sigI_gt ? _reflns_shell.meanI_over_uI_all ? _reflns_shell.meanI_over_uI_gt ? _reflns_shell.number_measured_gt ? _reflns_shell.number_unique_gt ? _reflns_shell.percent_possible_gt ? _reflns_shell.Rmerge_F_gt ? _reflns_shell.Rmerge_I_gt ? _reflns_shell.pdbx_redundancy 13.0 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_netI_over_sigmaI_all ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_R_split ? # _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.B_iso_max ? _refine.B_iso_mean ? _refine.B_iso_min ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.details ? _refine.diff_density_max ? _refine.diff_density_max_esd ? _refine.diff_density_min ? _refine.diff_density_min_esd ? _refine.diff_density_rms ? _refine.diff_density_rms_esd ? _refine.entry_id 4PNB _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.ls_abs_structure_details ? _refine.ls_abs_structure_Flack ? _refine.ls_abs_structure_Flack_esd ? _refine.ls_abs_structure_Rogers ? _refine.ls_abs_structure_Rogers_esd ? _refine.ls_d_res_high 2.052 _refine.ls_d_res_low 44.6 _refine.ls_extinction_coef ? _refine.ls_extinction_coef_esd ? _refine.ls_extinction_expression ? _refine.ls_extinction_method ? _refine.ls_goodness_of_fit_all ? _refine.ls_goodness_of_fit_all_esd ? _refine.ls_goodness_of_fit_obs ? _refine.ls_goodness_of_fit_obs_esd ? _refine.ls_hydrogen_treatment ? _refine.ls_matrix_type ? _refine.ls_number_constraints ? _refine.ls_number_parameters ? _refine.ls_number_reflns_all ? _refine.ls_number_reflns_obs 7557 _refine.ls_number_reflns_R_free 348 _refine.ls_number_reflns_R_work ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_obs 99.88 _refine.ls_percent_reflns_R_free 4.61 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2428 _refine.ls_R_factor_R_free 0.2765 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_R_factor_R_work 0.2411 _refine.ls_R_Fsqd_factor_obs ? _refine.ls_R_I_factor_obs ? _refine.ls_redundancy_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.ls_restrained_S_all ? _refine.ls_restrained_S_obs ? _refine.ls_shift_over_esd_max ? _refine.ls_shift_over_esd_mean ? _refine.ls_structure_factor_coef ? _refine.ls_weighting_details ? _refine.ls_weighting_scheme ? _refine.ls_wR_factor_all ? _refine.ls_wR_factor_obs ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.ls_R_factor_gt ? _refine.ls_goodness_of_fit_gt ? _refine.ls_goodness_of_fit_ref ? _refine.ls_shift_over_su_max ? _refine.ls_shift_over_su_max_lt ? _refine.ls_shift_over_su_mean ? _refine.ls_shift_over_su_mean_lt ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.37 _refine.pdbx_ls_sigma_Fsqd ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_R_Free_selection_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_real_space_R ? _refine.pdbx_density_correlation ? _refine.pdbx_pd_number_of_powder_patterns ? _refine.pdbx_pd_number_of_points ? _refine.pdbx_pd_meas_number_of_points ? _refine.pdbx_pd_proc_ls_prof_R_factor ? _refine.pdbx_pd_proc_ls_prof_wR_factor ? _refine.pdbx_pd_Marquardt_correlation_coeff ? _refine.pdbx_pd_Fsqrd_R_factor ? _refine.pdbx_pd_ls_matrix_band_width ? _refine.pdbx_overall_phase_error 32.97 _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_diffrn_id 1 _refine.overall_SU_B ? _refine.overall_SU_ML 0.28 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 901 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 975 _refine_hist.d_res_high 2.052 _refine_hist.d_res_low 44.6 # loop_ _refine_ls_restr.pdbx_refine_id _refine_ls_restr.criterion _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.number _refine_ls_restr.rejects _refine_ls_restr.type _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function 'X-RAY DIFFRACTION' ? 0.008 ? 928 ? f_bond_d ? ? 'X-RAY DIFFRACTION' ? 1.095 ? 1219 ? f_angle_d ? ? 'X-RAY DIFFRACTION' ? 15.362 ? 355 ? f_dihedral_angle_d ? ? 'X-RAY DIFFRACTION' ? 0.090 ? 144 ? f_chiral_restr ? ? 'X-RAY DIFFRACTION' ? 0.003 ? 143 ? f_plane_restr ? ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.R_factor_all _refine_ls_shell.R_factor_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.R_factor_R_work _refine_ls_shell.redundancy_reflns_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.wR_factor_all _refine_ls_shell.wR_factor_obs _refine_ls_shell.wR_factor_R_free _refine_ls_shell.wR_factor_R_work _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.pdbx_phase_error 'X-RAY DIFFRACTION' 2.0520 2.5853 . . 160 3567 100.00 . . . 0.3209 . 0.2335 . . . . . . . . 'X-RAY DIFFRACTION' 2.5853 44.6155 . . 188 3642 100.00 . . . 0.2621 . 0.2440 . . . . . . . . # _struct.entry_id 4PNB _struct.title 'A de novo designed hexameric coiled coil CC-Hex3.' _struct.pdbx_descriptor CC-Hex3 _struct.pdbx_model_details ? _struct.pdbx_formula_weight ? _struct.pdbx_formula_weight_method ? _struct.pdbx_model_type_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.entry_id 4PNB _struct_keywords.text 'De Novo Protein, Artificially designed - often synthetic, Alpha-helical barrel, coiled coil, protein design, peptide .' _struct_keywords.pdbx_keywords 'DE NOVO PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 AA1 GLY A 2 ? LYS A 30 ? GLY A 1 LYS A 29 1 ? 29 HELX_P HELX_P2 AA2 GLU B 3 ? LYS B 30 ? GLU B 2 LYS B 29 1 ? 28 HELX_P HELX_P3 AA3 GLY C 2 ? LYS C 30 ? GLY C 1 LYS C 29 1 ? 29 HELX_P HELX_P4 AA4 GLY D 2 ? LYS D 30 ? GLY D 1 LYS D 29 1 ? 29 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ACE 1 C ? ? ? 1_555 A GLY 2 N ? ? A ACE 0 A GLY 1 1_555 ? ? ? ? ? ? ? 1.331 ? covale2 covale both ? B ACE 1 C ? ? ? 1_555 B GLY 2 N ? ? B ACE 0 B GLY 1 1_555 ? ? ? ? ? ? ? 1.332 ? covale3 covale both ? C ACE 1 C ? ? ? 1_555 C GLY 2 N ? ? C ACE 0 C GLY 1 1_555 ? ? ? ? ? ? ? 1.337 ? covale4 covale both ? D ACE 1 C ? ? ? 1_555 D GLY 2 N ? ? D ACE 0 D GLY 1 1_555 ? ? ? ? ? ? ? 1.329 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _atom_sites.entry_id 4PNB _atom_sites.fract_transf_matrix[1][1] 0.011210 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011210 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011210 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 GLY 2 1 1 GLY GLY A . n A 1 3 GLU 3 2 2 GLU GLU A . n A 1 4 ILE 4 3 3 ILE ILE A . n A 1 5 ALA 5 4 4 ALA ALA A . n A 1 6 GLN 6 5 5 GLN GLN A . n A 1 7 SER 7 6 6 SER SER A . n A 1 8 ILE 8 7 7 ILE ILE A . n A 1 9 LYS 9 8 8 LYS LYS A . n A 1 10 GLU 10 9 9 GLU GLU A . n A 1 11 ILE 11 10 10 ILE ILE A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 LYS 13 12 12 LYS LYS A . n A 1 14 SER 14 13 13 SER SER A . n A 1 15 ILE 15 14 14 ILE ILE A . n A 1 16 LYS 16 15 15 LYS LYS A . n A 1 17 GLU 17 16 16 GLU GLU A . n A 1 18 ILE 18 17 17 ILE ILE A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 TRP 20 19 19 TRP TRP A . n A 1 21 SER 21 20 20 SER SER A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 LYS 23 22 22 LYS LYS A . n A 1 24 GLU 24 23 23 GLU GLU A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 GLN 27 26 26 GLN GLN A . n A 1 28 SER 28 27 27 SER SER A . n A 1 29 ILE 29 28 28 ILE ILE A . n A 1 30 LYS 30 29 29 LYS LYS A . n A 1 31 GLY 31 30 30 GLY GLY A . n B 1 1 ACE 1 0 0 ACE ACE B . n B 1 2 GLY 2 1 1 GLY GLY B . n B 1 3 GLU 3 2 2 GLU GLU B . n B 1 4 ILE 4 3 3 ILE ILE B . n B 1 5 ALA 5 4 4 ALA ALA B . n B 1 6 GLN 6 5 5 GLN GLN B . n B 1 7 SER 7 6 6 SER SER B . n B 1 8 ILE 8 7 7 ILE ILE B . n B 1 9 LYS 9 8 8 LYS LYS B . n B 1 10 GLU 10 9 9 GLU GLU B . n B 1 11 ILE 11 10 10 ILE ILE B . n B 1 12 ALA 12 11 11 ALA ALA B . n B 1 13 LYS 13 12 12 LYS LYS B . n B 1 14 SER 14 13 13 SER SER B . n B 1 15 ILE 15 14 14 ILE ILE B . n B 1 16 LYS 16 15 15 LYS LYS B . n B 1 17 GLU 17 16 16 GLU GLU B . n B 1 18 ILE 18 17 17 ILE ILE B . n B 1 19 ALA 19 18 18 ALA ALA B . n B 1 20 TRP 20 19 19 TRP TRP B . n B 1 21 SER 21 20 20 SER SER B . n B 1 22 ILE 22 21 21 ILE ILE B . n B 1 23 LYS 23 22 22 LYS LYS B . n B 1 24 GLU 24 23 23 GLU GLU B . n B 1 25 ILE 25 24 24 ILE ILE B . n B 1 26 ALA 26 25 25 ALA ALA B . n B 1 27 GLN 27 26 26 GLN GLN B . n B 1 28 SER 28 27 27 SER SER B . n B 1 29 ILE 29 28 28 ILE ILE B . n B 1 30 LYS 30 29 29 LYS LYS B . n B 1 31 GLY 31 30 30 GLY GLY B . n C 1 1 ACE 1 0 0 ACE ACE C . n C 1 2 GLY 2 1 1 GLY GLY C . n C 1 3 GLU 3 2 2 GLU GLU C . n C 1 4 ILE 4 3 3 ILE ILE C . n C 1 5 ALA 5 4 4 ALA ALA C . n C 1 6 GLN 6 5 5 GLN GLN C . n C 1 7 SER 7 6 6 SER SER C . n C 1 8 ILE 8 7 7 ILE ILE C . n C 1 9 LYS 9 8 8 LYS LYS C . n C 1 10 GLU 10 9 9 GLU GLU C . n C 1 11 ILE 11 10 10 ILE ILE C . n C 1 12 ALA 12 11 11 ALA ALA C . n C 1 13 LYS 13 12 12 LYS LYS C . n C 1 14 SER 14 13 13 SER SER C . n C 1 15 ILE 15 14 14 ILE ILE C . n C 1 16 LYS 16 15 15 LYS LYS C . n C 1 17 GLU 17 16 16 GLU GLU C . n C 1 18 ILE 18 17 17 ILE ILE C . n C 1 19 ALA 19 18 18 ALA ALA C . n C 1 20 TRP 20 19 19 TRP TRP C . n C 1 21 SER 21 20 20 SER SER C . n C 1 22 ILE 22 21 21 ILE ILE C . n C 1 23 LYS 23 22 22 LYS LYS C . n C 1 24 GLU 24 23 23 GLU GLU C . n C 1 25 ILE 25 24 24 ILE ILE C . n C 1 26 ALA 26 25 25 ALA ALA C . n C 1 27 GLN 27 26 26 GLN GLN C . n C 1 28 SER 28 27 27 SER SER C . n C 1 29 ILE 29 28 28 ILE ILE C . n C 1 30 LYS 30 29 29 LYS LYS C . n C 1 31 GLY 31 30 ? ? ? C . n D 1 1 ACE 1 0 0 ACE ACE D . n D 1 2 GLY 2 1 1 GLY GLY D . n D 1 3 GLU 3 2 2 GLU GLU D . n D 1 4 ILE 4 3 3 ILE ILE D . n D 1 5 ALA 5 4 4 ALA ALA D . n D 1 6 GLN 6 5 5 GLN GLN D . n D 1 7 SER 7 6 6 SER SER D . n D 1 8 ILE 8 7 7 ILE ILE D . n D 1 9 LYS 9 8 8 LYS LYS D . n D 1 10 GLU 10 9 9 GLU GLU D . n D 1 11 ILE 11 10 10 ILE ILE D . n D 1 12 ALA 12 11 11 ALA ALA D . n D 1 13 LYS 13 12 12 LYS LYS D . n D 1 14 SER 14 13 13 SER SER D . n D 1 15 ILE 15 14 14 ILE ILE D . n D 1 16 LYS 16 15 15 LYS LYS D . n D 1 17 GLU 17 16 16 GLU GLU D . n D 1 18 ILE 18 17 17 ILE ILE D . n D 1 19 ALA 19 18 18 ALA ALA D . n D 1 20 TRP 20 19 19 TRP TRP D . n D 1 21 SER 21 20 20 SER SER D . n D 1 22 ILE 22 21 21 ILE ILE D . n D 1 23 LYS 23 22 22 LYS LYS D . n D 1 24 GLU 24 23 23 GLU GLU D . n D 1 25 ILE 25 24 24 ILE ILE D . n D 1 26 ALA 26 25 25 ALA ALA D . n D 1 27 GLN 27 26 26 GLN GLN D . n D 1 28 SER 28 27 27 SER SER D . n D 1 29 ILE 29 28 28 ILE ILE D . n D 1 30 LYS 30 29 29 LYS LYS D . n D 1 31 GLY 31 30 30 GLY GLY D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 HOH 1 101 16 HOH HOH A . E 2 HOH 2 102 38 HOH HOH A . E 2 HOH 3 103 8 HOH HOH A . E 2 HOH 4 104 39 HOH HOH A . E 2 HOH 5 105 26 HOH HOH A . E 2 HOH 6 106 14 HOH HOH A . E 2 HOH 7 107 22 HOH HOH A . E 2 HOH 8 108 48 HOH HOH A . E 2 HOH 9 109 24 HOH HOH A . E 2 HOH 10 110 40 HOH HOH A . E 2 HOH 11 111 67 HOH HOH A . E 2 HOH 12 112 80 HOH HOH A . E 2 HOH 13 113 49 HOH HOH A . E 2 HOH 14 114 25 HOH HOH A . E 2 HOH 15 115 81 HOH HOH A . E 2 HOH 16 116 60 HOH HOH A . E 2 HOH 17 117 79 HOH HOH A . E 2 HOH 18 118 73 HOH HOH A . E 2 HOH 19 119 12 HOH HOH A . E 2 HOH 20 120 59 HOH HOH A . E 2 HOH 21 121 74 HOH HOH A . F 2 HOH 1 101 15 HOH HOH B . F 2 HOH 2 102 33 HOH HOH B . F 2 HOH 3 103 31 HOH HOH B . F 2 HOH 4 104 20 HOH HOH B . F 2 HOH 5 105 28 HOH HOH B . F 2 HOH 6 106 11 HOH HOH B . F 2 HOH 7 107 10 HOH HOH B . F 2 HOH 8 108 19 HOH HOH B . F 2 HOH 9 109 7 HOH HOH B . F 2 HOH 10 110 9 HOH HOH B . F 2 HOH 11 111 52 HOH HOH B . F 2 HOH 12 112 56 HOH HOH B . F 2 HOH 13 113 55 HOH HOH B . F 2 HOH 14 114 54 HOH HOH B . F 2 HOH 15 115 21 HOH HOH B . F 2 HOH 16 116 51 HOH HOH B . F 2 HOH 17 117 32 HOH HOH B . F 2 HOH 18 118 69 HOH HOH B . F 2 HOH 19 119 68 HOH HOH B . F 2 HOH 20 120 13 HOH HOH B . F 2 HOH 21 121 62 HOH HOH B . F 2 HOH 22 122 63 HOH HOH B . F 2 HOH 23 123 53 HOH HOH B . G 2 HOH 1 101 64 HOH HOH C . G 2 HOH 2 102 3 HOH HOH C . G 2 HOH 3 103 61 HOH HOH C . G 2 HOH 4 104 1 HOH HOH C . G 2 HOH 5 105 2 HOH HOH C . G 2 HOH 6 106 35 HOH HOH C . G 2 HOH 7 107 82 HOH HOH C . G 2 HOH 8 108 34 HOH HOH C . G 2 HOH 9 109 45 HOH HOH C . G 2 HOH 10 110 50 HOH HOH C . G 2 HOH 11 111 70 HOH HOH C . G 2 HOH 12 112 76 HOH HOH C . G 2 HOH 13 113 5 HOH HOH C . G 2 HOH 14 114 75 HOH HOH C . G 2 HOH 15 115 4 HOH HOH C . G 2 HOH 16 116 27 HOH HOH C . H 2 HOH 1 101 36 HOH HOH D . H 2 HOH 2 102 44 HOH HOH D . H 2 HOH 3 103 18 HOH HOH D . H 2 HOH 4 104 17 HOH HOH D . H 2 HOH 5 105 46 HOH HOH D . H 2 HOH 6 106 72 HOH HOH D . H 2 HOH 7 107 57 HOH HOH D . H 2 HOH 8 108 66 HOH HOH D . H 2 HOH 9 109 65 HOH HOH D . H 2 HOH 10 110 47 HOH HOH D . H 2 HOH 11 111 58 HOH HOH D . H 2 HOH 12 112 71 HOH HOH D . H 2 HOH 13 113 78 HOH HOH D . H 2 HOH 14 114 6 HOH HOH D . # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA hexameric 6 2 author_and_software_defined_assembly PISA hexameric 6 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1,2,4 A,E 1 6,7,8 B,F 2 1,3,5 C,D,G,H # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 8440 ? 1 MORE -88 ? 1 'SSA (A^2)' 10400 ? 2 'ABSA (A^2)' 7920 ? 2 MORE -85 ? 2 'SSA (A^2)' 10090 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 5_555 z,x,y 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 3 'crystal symmetry operation' 6_445 z-1/2,-x-1/2,-y 0.0000000000 0.0000000000 1.0000000000 -44.6050000000 -1.0000000000 0.0000000000 0.0000000000 -44.6050000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 4 'crystal symmetry operation' 9_555 y,z,x 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 5 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0.0000000000 -1.0000000000 0.0000000000 -44.6050000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 44.6050000000 6 'crystal symmetry operation' 16_555 x,-y,-z+1/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 44.6050000000 7 'crystal symmetry operation' 20_555 -z+1/2,x,-y 0.0000000000 0.0000000000 -1.0000000000 44.6050000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 8 'crystal symmetry operation' 24_555 -y,-z+1/2,x 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 44.6050000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 118 ? E HOH . 2 1 A HOH 119 ? E HOH . 3 1 A HOH 120 ? E HOH . 4 1 A HOH 121 ? E HOH . 5 1 B HOH 102 ? F HOH . 6 1 C HOH 113 ? G HOH . 7 1 C HOH 114 ? G HOH . 8 1 C HOH 115 ? G HOH . 9 1 C HOH 116 ? G HOH . 10 1 D HOH 114 ? H HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-10-22 2 'Structure model' 1 1 2014-11-05 3 'Structure model' 2 0 2017-08-30 4 'Structure model' 2 1 2017-09-13 5 'Structure model' 2 2 2019-10-09 6 'Structure model' 2 3 2019-12-11 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Atomic model' 4 3 'Structure model' 'Author supporting evidence' 5 4 'Structure model' 'Author supporting evidence' 6 5 'Structure model' 'Data collection' 7 5 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' atom_site 2 3 'Structure model' pdbx_audit_support 3 3 'Structure model' pdbx_distant_solvent_atoms 4 3 'Structure model' pdbx_validate_symm_contact 5 4 'Structure model' pdbx_audit_support 6 5 'Structure model' pdbx_struct_assembly 7 5 'Structure model' pdbx_struct_assembly_gen 8 5 'Structure model' pdbx_struct_assembly_prop 9 6 'Structure model' struct # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_atom_site.B_iso_or_equiv' 2 3 'Structure model' '_atom_site.Cartn_x' 3 3 'Structure model' '_atom_site.Cartn_y' 4 3 'Structure model' '_atom_site.Cartn_z' 5 3 'Structure model' '_atom_site.occupancy' 6 3 'Structure model' '_pdbx_audit_support.funding_organization' 7 3 'Structure model' '_pdbx_distant_solvent_atoms.auth_seq_id' 8 3 'Structure model' '_pdbx_distant_solvent_atoms.neighbor_macromolecule_distance' 9 3 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_1' 10 3 'Structure model' '_pdbx_validate_symm_contact.auth_seq_id_2' 11 4 'Structure model' '_pdbx_audit_support.funding_organization' 12 6 'Structure model' '_struct.title' # loop_ _software.citation_id _software.classification _software.compiler_name _software.compiler_version _software.contact_author _software.contact_author_email _software.date _software.description _software.dependencies _software.hardware _software.language _software.location _software.mods _software.name _software.os _software.os_version _software.type _software.version _software.pdbx_ordinal ? refinement ? ? ? ? ? ? ? ? ? ? ? PHENIX ? ? ? '(phenix.refine: 1.8.2_1309)' 1 ? 'data reduction' ? ? ? ? ? ? ? ? ? ? ? iMOSFLM ? ? ? . 2 ? 'data scaling' ? ? ? ? ? ? ? ? ? ? ? Aimless ? ? ? . 3 ? phasing ? ? ? ? ? ? ? ? ? ? ? PHASER ? ? ? . 4 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O D ALA 4 ? ? O D HOH 101 ? ? 2.06 2 1 O D ILE 21 ? ? O D HOH 102 ? ? 2.13 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 OG C SER 20 ? ? 1_555 O D HOH 102 ? ? 6_445 2.14 2 1 O C HOH 103 ? ? 1_555 O D HOH 109 ? ? 6_445 2.14 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 O A ACE 0 ? ? C A ACE 0 ? ? N A GLY 1 ? ? 92.11 123.20 -31.09 1.70 Y 2 1 C A ACE 0 ? ? N A GLY 1 ? ? CA A GLY 1 ? ? 88.44 122.30 -33.86 2.10 Y 3 1 C B ACE 0 ? ? N B GLY 1 ? ? CA B GLY 1 ? ? 100.93 122.30 -21.37 2.10 Y 4 1 O C ACE 0 ? ? C C ACE 0 ? ? N C GLY 1 ? ? 110.03 123.20 -13.17 1.70 Y 5 1 C C ACE 0 ? ? N C GLY 1 ? ? CA C GLY 1 ? ? 102.51 122.30 -19.79 2.10 Y 6 1 C D ACE 0 ? ? N D GLY 1 ? ? CA D GLY 1 ? ? 109.03 122.30 -13.27 2.10 Y # loop_ _pdbx_distant_solvent_atoms.id _pdbx_distant_solvent_atoms.PDB_model_num _pdbx_distant_solvent_atoms.auth_atom_id _pdbx_distant_solvent_atoms.label_alt_id _pdbx_distant_solvent_atoms.auth_asym_id _pdbx_distant_solvent_atoms.auth_comp_id _pdbx_distant_solvent_atoms.auth_seq_id _pdbx_distant_solvent_atoms.PDB_ins_code _pdbx_distant_solvent_atoms.neighbor_macromolecule_distance _pdbx_distant_solvent_atoms.neighbor_ligand_distance 1 1 O ? A HOH 118 ? 8.11 . 2 1 O ? A HOH 119 ? 8.14 . 3 1 O ? A HOH 120 ? 8.19 . 4 1 O ? A HOH 121 ? 8.98 . 5 1 O ? C HOH 112 ? 7.59 . 6 1 O ? C HOH 113 ? 7.64 . 7 1 O ? C HOH 114 ? 7.75 . 8 1 O ? C HOH 115 ? 8.10 . 9 1 O ? C HOH 116 ? 8.21 . 10 1 O ? D HOH 114 ? 8.18 . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 15 ? NZ ? A LYS 16 NZ 2 1 Y 1 C LYS 12 ? CD ? C LYS 13 CD 3 1 Y 1 C LYS 12 ? CE ? C LYS 13 CE 4 1 Y 1 C LYS 12 ? NZ ? C LYS 13 NZ 5 1 Y 1 C LYS 15 ? CG ? C LYS 16 CG 6 1 Y 1 C LYS 15 ? CD ? C LYS 16 CD 7 1 Y 1 C LYS 15 ? CE ? C LYS 16 CE 8 1 Y 1 C LYS 15 ? NZ ? C LYS 16 NZ 9 1 Y 1 C TRP 19 ? CG ? C TRP 20 CG 10 1 Y 1 C TRP 19 ? CE2 ? C TRP 20 CE2 11 1 Y 1 C TRP 19 ? CE3 ? C TRP 20 CE3 12 1 Y 1 C TRP 19 ? CZ2 ? C TRP 20 CZ2 13 1 Y 1 C TRP 19 ? CZ3 ? C TRP 20 CZ3 14 1 Y 1 C TRP 19 ? CH2 ? C TRP 20 CH2 15 1 Y 1 C GLN 26 ? CG ? C GLN 27 CG 16 1 Y 1 C GLN 26 ? CD ? C GLN 27 CD 17 1 Y 1 C GLN 26 ? OE1 ? C GLN 27 OE1 18 1 Y 1 C GLN 26 ? NE2 ? C GLN 27 NE2 19 1 Y 1 C LYS 29 ? CB ? C LYS 30 CB 20 1 Y 1 C LYS 29 ? CG ? C LYS 30 CG 21 1 Y 1 C LYS 29 ? CD ? C LYS 30 CD 22 1 Y 1 C LYS 29 ? CE ? C LYS 30 CE 23 1 Y 1 C LYS 29 ? NZ ? C LYS 30 NZ # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id C _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 30 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id C _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 31 # loop_ _pdbx_audit_support.funding_organization _pdbx_audit_support.country _pdbx_audit_support.grant_number _pdbx_audit_support.ordinal 'European Research Council' 'United Kingdom' 340764 1 'Engineering and Physical Sciences Research Council' 'United Kingdom' EP/J001430/1 2 'Biotechnology and Biological Sciences Research Council' 'United Kingdom' BB/J008990/1 3 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #